Wall clock time and date at job start Sat Apr 11 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00071 * 2 1 4 4 C 1.52998 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47090 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00179 * 90.00427 * 5 4 3 7 7 C 1.38233 * 120.00189 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99834 * 0.27623 * 7 6 5 9 9 S 1.76194 * 119.99826 * 179.72474 * 8 7 6 10 10 O 1.42101 * 106.40023 * 203.53743 * 9 8 7 11 11 O 1.42093 * 106.40547 * 336.46055 * 9 8 7 12 12 N 1.65597 * 107.21850 * 90.00275 * 9 8 7 13 13 C 1.46507 * 120.00287 * 64.99722 * 12 9 8 14 14 C 1.52999 * 109.47222 * 164.44861 * 13 12 9 15 15 C 1.50700 * 115.54860 * 65.11426 * 14 13 12 16 16 H 1.08002 * 120.00507 * 264.73105 * 15 14 13 17 17 C 1.37878 * 120.00132 * 84.73184 * 15 14 13 18 18 N 1.31520 * 119.99730 * 352.53548 * 17 15 14 19 19 Si 1.86796 * 120.00493 * 172.53137 * 17 15 14 20 20 H 1.48501 * 109.46999 * 89.99842 * 19 17 15 21 21 H 1.48495 * 109.47742 * 210.00505 * 19 17 15 22 22 H 1.48505 * 109.47082 * 330.00750 * 19 17 15 23 23 C 1.53001 * 117.49940 * 279.44756 * 14 13 12 24 24 C 1.52993 * 117.49782 * 210.78409 * 14 13 12 25 25 C 1.38240 * 119.99853 * 359.53105 * 8 7 6 26 26 C 1.38233 * 120.00030 * 0.40214 * 25 8 7 27 27 H 1.09004 * 109.46412 * 300.00082 * 1 2 3 28 28 H 1.09000 * 109.46964 * 59.99315 * 1 2 3 29 29 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46932 * 60.00310 * 3 2 1 31 31 H 1.08997 * 109.47690 * 300.00232 * 3 2 1 32 32 H 1.09005 * 109.47197 * 60.00337 * 4 3 2 33 33 H 1.09001 * 109.47641 * 300.00040 * 4 3 2 34 34 H 1.08003 * 119.99773 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.00261 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00220 * 244.99999 * 12 9 8 37 37 H 1.09001 * 109.46705 * 284.45064 * 13 12 9 38 38 H 1.09000 * 109.47049 * 44.44913 * 13 12 9 39 39 H 0.97000 * 119.99946 * 185.02552 * 18 17 15 40 40 H 1.08995 * 117.49926 * 359.97438 * 23 14 13 41 41 H 1.08998 * 117.49790 * 145.02331 * 23 14 13 42 42 H 1.09004 * 117.49936 * 214.98039 * 24 14 13 43 43 H 1.08996 * 117.50073 * 359.97438 * 24 14 13 44 44 H 1.07995 * 119.99873 * 180.22981 * 25 8 7 45 45 H 1.08000 * 119.99722 * 179.83059 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 6 4.4292 3.1924 1.1987 7 6 4.9920 4.4550 1.1993 8 6 5.2688 5.0888 0.0024 9 16 5.9794 6.7011 0.0032 10 8 5.6410 7.2893 -1.2454 11 8 5.6451 7.2864 1.2541 12 7 7.6245 6.5117 0.0002 13 6 8.2890 5.8966 -1.1515 14 6 9.7904 6.1842 -1.0877 15 6 10.5218 5.5653 0.0755 16 1 10.6899 6.1392 0.9749 17 6 10.9764 4.2664 -0.0083 18 7 10.6468 3.5196 -1.0396 19 14 12.0606 3.5671 1.3425 20 1 11.2095 2.9392 2.3850 21 1 12.9725 2.5462 0.7669 22 1 12.8617 4.6601 1.9499 23 6 10.2688 7.5533 -1.5752 24 6 10.5440 6.3026 -2.4138 25 6 4.9917 4.4561 -1.1951 26 6 4.4302 3.1929 -1.1956 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6435 -0.8892 33 1 3.8568 0.6438 0.8908 34 1 4.2088 2.6989 2.1338 35 1 5.2117 4.9479 2.1348 36 1 8.1482 6.8080 0.7610 37 1 8.1243 4.8193 -1.1333 38 1 7.8785 6.3114 -2.0721 39 1 10.9051 2.5849 -1.0639 40 1 9.5140 8.2489 -1.9419 41 1 11.1128 8.0061 -1.0550 42 1 11.5690 5.9331 -2.4450 43 1 9.9704 6.1751 -3.3318 44 1 5.2114 4.9498 -2.1301 45 1 4.2113 2.6998 -2.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429981067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:12 Heat of formation + Delta-G solvation = -98.697986 kcal Electronic energy + Delta-G solvation = -27172.009295 eV Core-core repulsion = 23281.279764 eV Total energy + Delta-G solvation = -3890.729532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.51386 -38.81665 -38.77527 -38.24822 -36.94324 -34.87949 -34.64428 -33.90555 -32.07492 -30.24252 -27.80146 -27.27735 -26.64112 -24.76510 -23.91436 -22.87827 -22.33277 -21.23050 -20.38052 -18.98572 -18.49279 -17.95219 -17.55542 -17.31551 -16.86602 -16.61044 -16.32338 -16.15815 -15.91075 -15.79332 -15.33393 -15.23728 -14.59715 -14.51878 -14.16724 -14.05890 -14.00897 -13.74057 -13.23088 -13.15977 -13.13621 -12.99788 -12.92793 -12.86090 -12.82692 -12.53446 -12.31078 -12.15556 -12.02958 -11.99058 -11.78690 -11.37638 -10.83337 -10.65998 -10.46287 -10.26501 -10.12814 -10.04253 -9.93639 -8.06467 -6.16915 -0.58200 -0.22467 0.30013 1.42695 1.47126 1.54143 2.03189 2.41181 2.45366 2.74028 2.86933 3.21278 3.33611 3.55570 3.72721 3.84683 3.92131 4.06521 4.14915 4.21417 4.32443 4.39168 4.43407 4.52714 4.53485 4.58439 4.65697 4.67928 4.70130 4.78541 4.84430 4.85017 4.98276 4.99300 5.05895 5.07993 5.14637 5.31175 5.35393 5.43711 5.66780 5.74344 5.82294 5.83853 6.17066 6.25224 6.44393 6.88427 7.51160 9.00750 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.003338 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.542934 B = 8386.109697 C = 9768.153889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.068 3.932 4 C -0.081 4.081 5 C -0.029 4.029 6 C -0.139 4.139 7 C -0.030 4.030 8 C -0.684 4.684 9 S 2.710 3.290 10 O -0.987 6.987 11 O -0.988 6.988 12 N -1.096 6.096 13 C 0.171 3.829 14 C 0.013 3.987 15 C -0.505 4.505 16 H 0.057 0.943 17 C 0.033 3.967 18 N -0.900 5.900 19 Si 0.940 3.060 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.272 1.272 23 C -0.190 4.190 24 C -0.158 4.158 25 C -0.031 4.031 26 C -0.139 4.139 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.422 0.578 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.259 0.741 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.327 -4.914 1.529 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.008 4.008 4 C -0.118 4.118 5 C -0.030 4.030 6 C -0.158 4.158 7 C -0.049 4.049 8 C -0.773 4.773 9 S 2.802 3.198 10 O -0.978 6.978 11 O -0.979 6.979 12 N -0.857 5.857 13 C 0.045 3.955 14 C 0.011 3.989 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.168 4.168 18 N -0.537 5.537 19 Si 0.767 3.233 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.197 1.197 23 C -0.227 4.227 24 C -0.197 4.197 25 C -0.051 4.051 26 C -0.157 4.157 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.160 0.840 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.695 -4.504 1.257 18.303 hybrid contribution 0.959 -0.866 0.841 1.541 sum -16.736 -5.370 2.098 17.701 Atomic orbital electron populations 1.22934 0.79372 1.03904 1.00870 1.87820 1.21530 1.28386 1.95633 1.22467 0.92463 0.84569 1.01324 1.20553 0.93683 0.92171 1.05426 1.20222 0.94042 0.95472 0.93227 1.21480 1.00242 0.94800 0.99252 1.21135 0.92430 0.94816 0.96567 1.30783 1.19949 1.25998 1.00541 1.01031 0.72188 0.74087 0.72446 1.93516 1.83485 1.75513 1.45248 1.93515 1.83365 1.76608 1.44367 1.55086 1.24229 1.77377 1.29006 1.20647 0.93434 0.96115 0.85299 1.19025 0.90491 0.94946 0.94409 1.20615 1.35600 0.98001 1.00061 0.92515 1.25544 0.96606 0.97578 0.97077 1.70055 1.46585 1.06630 1.30463 0.85832 0.79401 0.78117 0.79928 1.20338 1.21463 1.19656 1.23027 1.03062 0.91270 1.05340 1.22492 1.00474 1.01634 0.95051 1.21131 0.92456 0.94915 0.96563 1.21471 1.00179 0.94759 0.99309 0.93210 0.93236 0.88386 0.92353 0.92424 0.89133 0.89033 0.82546 0.83577 0.74234 0.92986 0.92372 0.93146 0.89459 0.90208 0.91907 0.90402 0.83960 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.47 10.70 -148.98 -1.59 -9.06 16 3 C 0.07 1.09 5.92 71.98 0.43 1.52 16 4 C -0.08 -1.40 5.71 29.85 0.17 -1.23 16 5 C -0.03 -0.63 5.13 -19.86 -0.10 -0.74 16 6 C -0.14 -3.17 9.70 22.27 0.22 -2.96 16 7 C -0.03 -0.83 9.52 22.27 0.21 -0.62 16 8 C -0.68 -20.90 5.95 22.27 0.13 -20.77 16 9 S 2.71 91.91 5.74 -56.49 -0.32 91.59 16 10 O -0.99 -37.16 16.75 -128.00 -2.14 -39.30 16 11 O -0.99 -36.15 17.28 -128.00 -2.21 -38.36 16 12 N -1.10 -40.01 5.95 -187.48 -1.12 -41.12 16 13 C 0.17 7.04 6.05 86.38 0.52 7.56 16 14 C 0.01 0.60 1.43 -52.93 -0.08 0.52 16 15 C -0.50 -25.31 8.47 25.60 0.22 -25.09 16 16 H 0.06 2.82 7.82 -2.91 -0.02 2.80 16 17 C 0.03 1.70 5.38 84.65 0.46 2.15 16 18 N -0.90 -47.95 12.98 21.45 0.28 -47.67 16 19 Si 0.94 41.26 29.55 68.60 2.03 43.29 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C -0.19 -7.69 9.96 30.62 0.30 -7.38 16 24 C -0.16 -6.96 9.49 30.62 0.29 -6.67 16 25 C -0.03 -0.89 9.52 22.27 0.21 -0.67 16 26 C -0.14 -3.26 9.70 22.27 0.22 -3.04 16 27 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.52 8.09 -2.38 -0.02 1.50 16 33 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 34 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.15 3.69 7.62 -2.91 -0.02 3.67 16 36 H 0.42 15.13 8.38 -96.75 -0.81 14.32 16 37 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.25 7.69 -2.39 -0.02 2.23 16 39 H 0.26 13.36 8.32 -92.71 -0.77 12.59 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 43 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.14 3.84 7.62 -2.91 -0.02 3.82 16 45 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -64.27 394.37 -0.46 -64.74 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.17 Total: 31.77 kcal Atomic # 6 Polarization: -60.30 SS G_CDS: 4.45 Total: -55.86 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -0.84 Total: -88.79 kcal Atomic # 8 Polarization: -80.78 SS G_CDS: -5.95 Total: -86.73 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 91.91 SS G_CDS: -0.32 Total: 91.59 kcal Total: -64.27 -0.46 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429981067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.961 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds