Wall clock time and date at job start Sat Apr 11 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00361 * 2 1 4 4 H 1.09001 * 109.47364 * 29.99644 * 3 2 1 5 5 C 1.53001 * 109.47111 * 150.00097 * 3 2 1 6 6 S 1.81395 * 109.46983 * 299.99851 * 5 3 2 7 7 O 1.42104 * 110.54652 * 68.37758 * 6 5 3 8 8 O 1.42104 * 110.54626 * 291.62472 * 6 5 3 9 9 N 1.65595 * 104.45317 * 180.02562 * 6 5 3 10 10 C 1.46505 * 119.99977 * 64.99385 * 9 6 5 11 11 C 1.53002 * 109.46901 * 159.13983 * 10 9 6 12 12 C 1.50703 * 115.55188 * 294.33082 * 11 10 9 13 13 H 1.08006 * 119.99748 * 95.26870 * 12 11 10 14 14 C 1.37880 * 120.00217 * 274.99662 * 12 11 10 15 15 N 1.31513 * 119.99735 * 355.55841 * 14 12 11 16 16 Si 1.86800 * 119.99867 * 175.55535 * 14 12 11 17 17 H 1.48497 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46723 * 119.99816 * 16 14 12 19 19 H 1.48495 * 109.46936 * 239.99871 * 16 14 12 20 20 C 1.53000 * 117.49957 * 80.00538 * 11 10 9 21 21 C 1.52998 * 117.49824 * 148.66641 * 11 10 9 22 22 C 1.50702 * 109.47181 * 269.99891 * 3 2 1 23 23 C 1.38242 * 119.99491 * 324.72671 * 22 3 2 24 24 C 1.38240 * 119.99331 * 179.78643 * 23 22 3 25 25 C 1.38228 * 120.00400 * 0.44289 * 24 23 22 26 26 C 1.38242 * 120.00023 * 359.81014 * 25 24 23 27 27 C 1.38228 * 120.00349 * 145.00091 * 22 3 2 28 28 H 1.08997 * 109.47443 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47249 * 300.00696 * 1 2 3 30 30 H 1.09007 * 109.46822 * 59.99828 * 1 2 3 31 31 H 1.09004 * 109.46952 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47375 * 59.99555 * 5 3 2 33 33 H 0.97006 * 120.00489 * 245.00382 * 9 6 5 34 34 H 1.08999 * 109.46879 * 39.14621 * 10 9 6 35 35 H 1.08996 * 109.47680 * 279.13935 * 10 9 6 36 36 H 0.97007 * 119.99528 * 185.00583 * 15 14 12 37 37 H 1.09001 * 117.49774 * 215.00127 * 20 11 10 38 38 H 1.08993 * 117.49727 * 0.02562 * 20 11 10 39 39 H 1.09004 * 117.50046 * 359.97438 * 21 11 10 40 40 H 1.09003 * 117.50238 * 144.97193 * 21 11 10 41 41 H 1.07999 * 120.00181 * 359.97438 * 23 22 3 42 42 H 1.08002 * 119.99646 * 180.27601 * 24 23 22 43 43 H 1.08002 * 120.00461 * 179.82972 * 25 24 23 44 44 H 1.08000 * 120.00422 * 179.97438 * 26 25 24 45 45 H 1.08008 * 119.99683 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3590 1.2631 0.7212 6 16 3.1130 0.7107 2.4314 7 8 2.7175 -0.6538 2.4629 8 8 2.4092 1.6947 3.1770 9 7 4.6330 0.7112 3.0886 10 6 5.3636 1.9715 3.2438 11 6 6.4560 1.8008 4.3013 12 6 5.9683 1.5486 5.7048 13 1 5.8870 0.5371 6.0746 14 6 5.6313 2.6094 6.5186 15 7 5.8177 3.8428 6.1021 16 14 4.9100 2.2944 8.2127 17 1 4.8012 0.8310 8.4402 18 1 5.7935 2.8922 9.2458 19 1 3.5612 2.9098 8.2986 20 6 7.7550 1.1164 3.8711 21 6 7.7349 2.6241 4.1352 22 6 2.2147 1.7643 -1.4208 23 6 2.5651 0.8516 -2.3982 24 6 2.7483 1.2718 -3.7024 25 6 2.5900 2.6060 -4.0274 26 6 2.2446 3.5195 -3.0490 27 6 2.0573 3.0986 -1.7457 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8026 2.2588 0.7208 32 1 4.0242 0.5691 0.2075 33 1 5.0397 -0.1231 3.3707 34 1 4.6737 2.7551 3.5573 35 1 5.8187 2.2473 2.2926 36 1 5.6492 4.5874 6.7006 37 1 8.2568 0.4836 4.6032 38 1 7.8314 0.7881 2.8346 39 1 7.7982 3.2870 3.2722 40 1 8.2233 2.9836 5.0409 41 1 2.6928 -0.1901 -2.1435 42 1 3.0177 0.5581 -4.4669 43 1 2.7358 2.9348 -5.0458 44 1 2.1213 4.5620 -3.3028 45 1 1.7874 3.8123 -0.9812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451507204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:18 Heat of formation + Delta-G solvation = -86.679471 kcal Electronic energy + Delta-G solvation = -27708.757949 eV Core-core repulsion = 23818.549579 eV Total energy + Delta-G solvation = -3890.208370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71220 -38.78979 -38.70310 -38.04930 -36.93770 -34.85954 -34.00181 -33.87797 -31.79135 -30.74305 -27.83481 -27.57546 -26.59645 -25.20182 -23.45880 -22.83355 -22.02671 -21.15745 -20.21876 -18.85553 -18.37945 -18.01770 -17.72694 -17.42317 -16.88790 -16.56028 -16.47169 -16.05367 -15.75675 -15.45218 -15.37852 -15.23526 -14.78874 -14.26023 -14.16507 -14.06767 -13.86785 -13.72735 -13.68405 -13.12477 -13.03207 -12.98288 -12.91577 -12.87986 -12.80891 -12.42870 -12.35407 -12.33409 -11.93209 -11.85290 -11.77821 -11.31169 -10.99819 -10.85163 -10.36686 -10.20258 -9.88991 -9.83597 -9.71235 -8.08433 -6.17905 -0.71794 0.35858 0.48931 1.36167 1.42236 1.49321 1.84789 2.42823 2.45297 2.74603 2.91097 3.20585 3.30046 3.57017 3.58267 3.66631 3.72551 4.06654 4.15452 4.18786 4.25649 4.30690 4.38522 4.45119 4.58407 4.61801 4.63949 4.65241 4.69930 4.72595 4.77724 4.80116 5.03042 5.09526 5.15489 5.35919 5.37034 5.53872 5.55945 5.61584 5.70041 5.79631 5.84576 5.98610 6.08432 6.26742 6.44796 6.87445 7.49631 8.98495 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.003225 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.769645 B = 8680.564751 C = 9362.947837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.392 6.392 3 C 0.134 3.866 4 H 0.088 0.912 5 C -0.607 4.607 6 S 2.613 3.387 7 O -0.979 6.979 8 O -1.000 7.000 9 N -1.101 6.101 10 C 0.162 3.838 11 C 0.001 3.999 12 C -0.502 4.502 13 H 0.048 0.952 14 C 0.026 3.974 15 N -0.901 5.901 16 Si 0.932 3.068 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.288 1.288 20 C -0.182 4.182 21 C -0.150 4.150 22 C -0.115 4.115 23 C -0.107 4.107 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.107 0.893 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.418 0.582 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 -2.394 -22.259 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.311 6.311 3 C 0.074 3.926 4 H 0.106 0.894 5 C -0.738 4.738 6 S 2.709 3.291 7 O -0.970 6.970 8 O -0.991 6.991 9 N -0.860 5.860 10 C 0.036 3.964 11 C -0.001 4.001 12 C -0.540 4.540 13 H 0.066 0.934 14 C -0.174 4.174 15 N -0.539 5.539 16 Si 0.759 3.241 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.214 1.214 20 C -0.220 4.220 21 C -0.189 4.189 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.141 4.141 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.183 0.817 32 H 0.181 0.819 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.452 -2.449 -21.780 23.149 hybrid contribution 0.060 0.180 1.186 1.201 sum -7.392 -2.269 -20.594 21.997 Atomic orbital electron populations 1.23141 0.79009 1.04778 1.01139 1.88002 1.21954 1.26149 1.94995 1.20611 0.91867 0.86209 0.93886 0.89441 1.30642 1.05833 1.15737 1.21589 1.04586 0.73168 0.73531 0.77818 1.93527 1.81248 1.34548 1.87627 1.93557 1.72703 1.63744 1.69049 1.55114 1.37007 1.15722 1.78159 1.20781 0.94491 0.83676 0.97439 1.19044 0.86103 1.01507 0.93418 1.20706 1.43635 0.92155 0.97542 0.93360 1.25547 0.95609 0.95341 1.00911 1.70044 1.49288 0.98316 1.36238 0.85901 0.78301 0.78375 0.81538 1.19496 1.20139 1.21410 1.23032 1.03251 0.94900 1.00774 1.22423 1.03577 0.92572 1.00306 1.20034 1.02652 0.94701 0.94269 1.21146 0.98241 0.99976 0.93115 1.21462 0.99907 0.96876 0.96263 1.21557 0.98390 0.93224 1.00543 1.21438 0.99385 1.00977 0.92526 1.21291 1.00131 0.94816 0.97907 0.87505 0.93620 0.91950 0.81671 0.81874 0.74746 0.93331 0.90884 0.93208 0.90831 0.88082 0.89877 0.92373 0.85522 0.84003 0.83654 0.83836 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.81 113.37 1.23 1.53 16 2 O -0.39 -9.98 8.54 -142.53 -1.22 -11.20 16 3 C 0.13 3.15 2.37 29.85 0.07 3.22 16 4 H 0.09 1.96 7.70 -2.39 -0.02 1.94 16 5 C -0.61 -14.50 5.78 71.98 0.42 -14.08 16 6 S 2.61 90.61 5.25 -56.49 -0.30 90.31 16 7 O -0.98 -38.05 17.41 -123.49 -2.15 -40.20 16 8 O -1.00 -43.44 17.43 -127.65 -2.23 -45.66 16 9 N -1.10 -40.03 5.77 -187.48 -1.08 -41.11 16 10 C 0.16 6.53 6.00 86.38 0.52 7.04 16 11 C 0.00 0.05 1.49 -52.93 -0.08 -0.03 16 12 C -0.50 -27.11 8.75 25.60 0.22 -26.89 16 13 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 14 C 0.03 1.47 5.43 84.66 0.46 1.93 16 15 N -0.90 -51.15 12.65 21.45 0.27 -50.88 16 16 Si 0.93 44.96 29.54 68.60 2.03 46.99 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 C -0.18 -7.00 9.96 30.62 0.30 -6.70 16 21 C -0.15 -6.50 9.14 30.62 0.28 -6.22 16 22 C -0.12 -2.36 4.96 -19.86 -0.10 -2.46 16 23 C -0.11 -2.05 9.35 22.27 0.21 -1.84 16 24 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 25 C -0.12 -1.66 10.05 22.27 0.22 -1.43 16 26 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.12 -2.24 9.68 22.27 0.22 -2.03 16 28 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.17 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.16 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.42 14.67 8.66 -96.74 -0.84 13.83 16 34 H 0.05 2.27 7.59 -2.39 -0.02 2.25 16 35 H 0.07 2.31 8.09 -2.39 -0.02 2.29 16 36 H 0.26 14.15 8.32 -92.70 -0.77 13.37 16 37 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.13 2.43 7.64 -2.91 -0.02 2.41 16 42 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 45 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -73.35 393.05 -0.11 -73.46 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.14 Total: 29.67 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 4.42 Total: -51.37 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -0.81 Total: -92.00 kcal Atomic # 8 Polarization: -91.47 SS G_CDS: -5.59 Total: -97.06 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 90.61 SS G_CDS: -0.30 Total: 90.31 kcal Total: -73.35 -0.11 -73.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451507204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.216 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds