Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99655 * 2 1 4 4 C 1.53005 * 109.46720 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47184 * 64.99934 * 4 3 2 6 6 C 1.37093 * 120.00000 * 270.00159 * 5 4 3 7 7 H 1.08000 * 120.00270 * 145.14474 * 6 5 4 8 8 C 1.38952 * 119.99837 * 325.14018 * 6 5 4 9 9 N 1.31408 * 120.00323 * 337.43886 * 8 6 5 10 10 Si 1.86804 * 119.99716 * 157.42764 * 8 6 5 11 11 H 1.48508 * 109.46856 * 90.00597 * 10 8 6 12 12 H 1.48499 * 109.47310 * 210.00159 * 10 8 6 13 13 H 1.48501 * 109.47302 * 330.00616 * 10 8 6 14 14 C 1.34777 * 119.99804 * 89.99851 * 5 4 3 15 15 O 1.21296 * 120.00072 * 4.90020 * 14 5 4 16 16 C 1.50697 * 119.99864 * 184.90124 * 14 5 4 17 17 C 1.53003 * 109.47291 * 177.66009 * 16 14 5 18 18 S 1.81390 * 109.47324 * 179.97438 * 17 16 14 19 19 C 1.76201 * 103.00295 * 180.02562 * 18 17 16 20 20 C 1.38914 * 120.02653 * 180.02562 * 19 18 17 21 21 C 1.38092 * 119.97420 * 180.29806 * 20 19 18 22 22 C 1.38718 * 120.02468 * 359.44083 * 21 20 19 23 23 O 1.36001 * 119.97589 * 180.25506 * 22 21 20 24 24 C 1.42904 * 117.00289 * 0.30368 * 23 22 21 25 25 C 1.38715 * 120.04491 * 0.56078 * 22 21 20 26 26 C 1.38085 * 120.02708 * 359.71738 * 25 22 21 27 27 H 1.08995 * 109.47572 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47013 * 300.00097 * 1 2 3 29 29 H 1.09005 * 109.47557 * 59.99707 * 1 2 3 30 30 H 1.08992 * 109.47293 * 60.00558 * 3 2 1 31 31 H 1.08993 * 109.47368 * 299.99688 * 3 2 1 32 32 H 1.08994 * 109.47271 * 305.00124 * 4 3 2 33 33 H 1.09005 * 109.47221 * 184.99895 * 4 3 2 34 34 H 0.96998 * 120.00001 * 185.02448 * 9 8 6 35 35 H 1.09001 * 109.47365 * 57.66116 * 16 14 5 36 36 H 1.09003 * 109.47210 * 297.65927 * 16 14 5 37 37 H 1.09001 * 109.46829 * 59.99778 * 17 16 14 38 38 H 1.08995 * 109.46950 * 300.00367 * 17 16 14 39 39 H 1.08000 * 120.01622 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.99126 * 179.70279 * 21 20 19 41 41 H 1.09003 * 109.46432 * 300.00006 * 24 23 22 42 42 H 1.08999 * 109.46982 * 59.99065 * 24 23 22 43 43 H 1.08997 * 109.47524 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.98231 * 179.70121 * 25 22 21 45 45 H 1.08002 * 120.01071 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0968 -0.7985 -1.3370 7 1 3.8633 -1.3054 -2.2617 8 6 4.5202 -1.5280 -0.2327 9 7 5.2126 -0.9401 0.7169 10 14 4.1047 -3.3442 -0.0980 11 1 5.1828 -4.1468 -0.7298 12 1 3.9829 -3.7193 1.3337 13 1 2.8185 -3.6106 -0.7907 14 6 4.2614 1.3338 -2.3219 15 8 4.2403 2.5424 -2.2223 16 6 4.6071 0.6923 -3.6409 17 6 4.8292 1.7796 -4.6942 18 16 5.2461 1.0076 -6.2818 19 6 5.4627 2.3914 -7.3508 20 6 5.7972 2.1937 -8.6845 21 6 5.9728 3.2792 -9.5199 22 6 5.8039 4.5662 -9.0306 23 8 5.9720 5.6343 -9.8555 24 6 6.3153 5.3568 -11.2146 25 6 5.4699 4.7646 -7.6989 26 6 5.2995 3.6808 -6.8604 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0889 34 1 5.5704 -1.4634 1.4511 35 1 3.7892 0.0439 -3.9551 36 1 5.5169 0.1021 -3.5306 37 1 5.6471 2.4281 -4.3800 38 1 3.9195 2.3698 -4.8045 39 1 5.9242 1.1917 -9.0669 40 1 6.2375 3.1260 -10.5557 41 1 7.2581 4.8106 -11.2468 42 1 5.5305 4.7541 -11.6718 43 1 6.4189 6.2937 -11.7618 44 1 5.3434 5.7672 -7.3178 45 1 5.0399 3.8357 -5.8235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457182009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -86.797566 kcal Electronic energy + Delta-G solvation = -26379.569176 eV Core-core repulsion = 22489.355685 eV Total energy + Delta-G solvation = -3890.213491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.16359 -38.75234 -37.46860 -37.00000 -34.77489 -32.40936 -31.58124 -31.21562 -30.35216 -29.17700 -27.52668 -25.88261 -24.97466 -24.18324 -22.68561 -22.30570 -21.34076 -19.06145 -18.40526 -17.24896 -16.95131 -16.42264 -16.16488 -15.94759 -15.48859 -15.40713 -14.90982 -14.73727 -14.62507 -14.34120 -14.17813 -13.97432 -13.83742 -13.57815 -13.21065 -12.92259 -12.64433 -12.26674 -12.01082 -11.72905 -11.70031 -11.53458 -11.41937 -11.14220 -11.10778 -11.09919 -10.96080 -10.67540 -10.62791 -10.34705 -10.07295 -9.94348 -9.19097 -9.16483 -9.10207 -8.97832 -8.48148 -7.50636 -7.11860 -6.33315 -3.96728 1.16861 1.21782 1.69171 2.63648 3.08114 3.16764 3.27697 3.34168 3.57024 3.83397 4.17308 4.50978 4.59937 4.69765 4.74930 4.84625 4.86280 5.08633 5.14640 5.18838 5.28258 5.35869 5.37986 5.47442 5.65710 5.71729 5.84642 5.88398 5.93819 5.97301 6.02425 6.06170 6.15199 6.23108 6.26484 6.37333 6.38266 6.51471 6.52758 6.72996 7.19063 7.28168 7.51829 7.80758 7.99488 8.37708 9.11788 9.49212 9.90844 10.69707 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.002316 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.476745 B =12087.363653 C =12818.211509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.424 5.424 6 C -0.328 4.328 7 H 0.088 0.912 8 C 0.053 3.947 9 N -0.863 5.863 10 Si 0.916 3.084 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.470 3.530 15 O -0.614 6.614 16 C -0.103 4.103 17 C -0.079 4.079 18 S -0.126 6.126 19 C -0.110 4.110 20 C -0.064 4.064 21 C -0.191 4.191 22 C 0.113 3.887 23 O -0.319 6.319 24 C 0.028 3.972 25 C -0.130 4.130 26 C -0.092 4.092 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 6.059 -15.468 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.141 5.141 6 C -0.456 4.456 7 H 0.106 0.894 8 C -0.153 4.153 9 N -0.500 5.500 10 Si 0.743 3.257 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.258 3.742 15 O -0.502 6.502 16 C -0.145 4.145 17 C -0.227 4.227 18 S 0.118 5.882 19 C -0.223 4.223 20 C -0.088 4.088 21 C -0.211 4.211 22 C 0.066 3.934 23 O -0.233 6.233 24 C -0.068 4.068 25 C -0.150 4.150 26 C -0.116 4.116 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.151 0.849 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.012 5.375 -15.264 16.215 hybrid contribution -0.523 0.392 0.205 0.685 sum -1.536 5.767 -15.060 16.199 Atomic orbital electron populations 1.22647 0.83537 1.01736 0.98782 1.88163 1.17248 1.27573 1.94998 1.23014 0.96486 0.84381 0.98426 1.21554 0.89305 0.99316 0.91443 1.43310 1.55432 1.06349 1.08997 1.19275 1.45896 0.80485 0.99921 0.89401 1.25219 0.94231 0.99949 0.95912 1.69809 1.30371 1.36922 1.12883 0.86113 0.79231 0.82686 0.77668 1.20627 1.20891 1.19228 1.20106 0.80908 0.86658 0.86555 1.90516 1.59179 1.14592 1.85876 1.21054 1.04331 0.96969 0.92108 1.23454 1.05463 1.01359 0.92467 1.85394 1.87086 1.10236 1.05442 1.21712 1.06330 0.96789 0.97505 1.20543 0.98219 0.98777 0.91284 1.21113 1.07754 0.91651 1.00617 1.18992 0.97635 0.86085 0.90680 1.86086 1.84984 1.31136 1.21072 1.23035 1.00015 1.03166 0.80539 1.20341 1.04212 0.99787 0.90690 1.21189 0.99377 0.90781 1.00263 0.90445 0.95201 0.95021 0.94282 0.94448 0.86395 0.90947 0.92014 0.89419 0.88485 0.88940 0.89278 0.85239 0.85212 0.92679 0.92703 0.88359 0.84907 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.66 10.18 -35.23 -0.36 -8.02 16 3 C 0.05 1.12 6.28 37.16 0.23 1.36 16 4 C 0.11 2.54 5.47 -4.04 -0.02 2.52 16 5 N -0.42 -10.45 2.52 -114.81 -0.29 -10.74 16 6 C -0.33 -8.21 8.23 -14.93 -0.12 -8.34 16 7 H 0.09 2.12 6.96 -52.49 -0.37 1.76 16 8 C 0.05 1.33 4.95 -17.47 -0.09 1.24 16 9 N -0.86 -22.66 11.34 55.50 0.63 -22.03 16 10 Si 0.92 19.96 29.61 -169.99 -5.03 14.92 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 C 0.47 11.03 7.62 -10.99 -0.08 10.95 16 15 O -0.61 -15.39 15.54 5.54 0.09 -15.30 16 16 C -0.10 -2.00 4.33 -27.88 -0.12 -2.12 16 17 C -0.08 -1.33 3.62 37.16 0.13 -1.20 16 18 S -0.13 -1.90 21.92 -107.50 -2.36 -4.26 16 19 C -0.11 -1.54 6.11 -39.08 -0.24 -1.78 16 20 C -0.06 -0.78 9.79 -39.38 -0.39 -1.16 16 21 C -0.19 -2.07 9.03 -39.46 -0.36 -2.43 16 22 C 0.11 1.35 6.69 -39.23 -0.26 1.09 16 23 O -0.32 -3.46 10.50 -19.74 -0.21 -3.67 16 24 C 0.03 0.18 9.81 101.05 0.99 1.17 16 25 C -0.13 -1.64 9.98 -39.46 -0.39 -2.03 16 26 C -0.09 -1.26 9.36 -39.38 -0.37 -1.63 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.12 3.00 5.37 -51.93 -0.28 2.73 16 33 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 34 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 35 H 0.09 1.63 7.68 -51.93 -0.40 1.23 16 36 H 0.10 1.90 8.10 -51.93 -0.42 1.48 16 37 H 0.09 1.61 7.68 -51.92 -0.40 1.21 16 38 H 0.09 1.51 7.73 -51.93 -0.40 1.11 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.13 1.04 6.29 -52.49 -0.33 0.71 16 41 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 42 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.14 1.89 5.87 -52.49 -0.31 1.58 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -29.88 386.83 -8.27 -38.14 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.60 Total: 5.89 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.03 Total: -0.77 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.34 Total: -32.77 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.48 Total: -26.98 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.36 Total: -4.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.88 -8.27 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.655 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds