Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99655 * 2 1 4 4 C 1.53005 * 109.46720 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47184 * 64.99934 * 4 3 2 6 6 C 1.37093 * 120.00000 * 270.00159 * 5 4 3 7 7 H 1.08000 * 120.00270 * 145.14474 * 6 5 4 8 8 C 1.38952 * 119.99837 * 325.14018 * 6 5 4 9 9 N 1.31408 * 120.00323 * 337.43886 * 8 6 5 10 10 Si 1.86804 * 119.99716 * 157.42764 * 8 6 5 11 11 H 1.48508 * 109.46856 * 90.00597 * 10 8 6 12 12 H 1.48499 * 109.47310 * 210.00159 * 10 8 6 13 13 H 1.48501 * 109.47302 * 330.00616 * 10 8 6 14 14 C 1.34777 * 119.99804 * 89.99851 * 5 4 3 15 15 O 1.21296 * 120.00072 * 4.90020 * 14 5 4 16 16 C 1.50697 * 119.99864 * 184.90124 * 14 5 4 17 17 C 1.53003 * 109.47291 * 177.66009 * 16 14 5 18 18 S 1.81390 * 109.47324 * 179.97438 * 17 16 14 19 19 C 1.76201 * 103.00295 * 180.02562 * 18 17 16 20 20 C 1.38914 * 120.02653 * 180.02562 * 19 18 17 21 21 C 1.38092 * 119.97420 * 180.29806 * 20 19 18 22 22 C 1.38718 * 120.02468 * 359.44083 * 21 20 19 23 23 O 1.36001 * 119.97589 * 180.25506 * 22 21 20 24 24 C 1.42904 * 117.00289 * 0.30368 * 23 22 21 25 25 C 1.38715 * 120.04491 * 0.56078 * 22 21 20 26 26 C 1.38085 * 120.02708 * 359.71738 * 25 22 21 27 27 H 1.08995 * 109.47572 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47013 * 300.00097 * 1 2 3 29 29 H 1.09005 * 109.47557 * 59.99707 * 1 2 3 30 30 H 1.08992 * 109.47293 * 60.00558 * 3 2 1 31 31 H 1.08993 * 109.47368 * 299.99688 * 3 2 1 32 32 H 1.08994 * 109.47271 * 305.00124 * 4 3 2 33 33 H 1.09005 * 109.47221 * 184.99895 * 4 3 2 34 34 H 0.96998 * 120.00001 * 185.02448 * 9 8 6 35 35 H 1.09001 * 109.47365 * 57.66116 * 16 14 5 36 36 H 1.09003 * 109.47210 * 297.65927 * 16 14 5 37 37 H 1.09001 * 109.46829 * 59.99778 * 17 16 14 38 38 H 1.08995 * 109.46950 * 300.00367 * 17 16 14 39 39 H 1.08000 * 120.01622 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.99126 * 179.70279 * 21 20 19 41 41 H 1.09003 * 109.46432 * 300.00006 * 24 23 22 42 42 H 1.08999 * 109.46982 * 59.99065 * 24 23 22 43 43 H 1.08997 * 109.47524 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.98231 * 179.70121 * 25 22 21 45 45 H 1.08002 * 120.01071 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0968 -0.7985 -1.3370 7 1 3.8633 -1.3054 -2.2617 8 6 4.5202 -1.5280 -0.2327 9 7 5.2126 -0.9401 0.7169 10 14 4.1047 -3.3442 -0.0980 11 1 5.1828 -4.1468 -0.7298 12 1 3.9829 -3.7193 1.3337 13 1 2.8185 -3.6106 -0.7907 14 6 4.2614 1.3338 -2.3219 15 8 4.2403 2.5424 -2.2223 16 6 4.6071 0.6923 -3.6409 17 6 4.8292 1.7796 -4.6942 18 16 5.2461 1.0076 -6.2818 19 6 5.4627 2.3914 -7.3508 20 6 5.7972 2.1937 -8.6845 21 6 5.9728 3.2792 -9.5199 22 6 5.8039 4.5662 -9.0306 23 8 5.9720 5.6343 -9.8555 24 6 6.3153 5.3568 -11.2146 25 6 5.4699 4.7646 -7.6989 26 6 5.2995 3.6808 -6.8604 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0889 34 1 5.5704 -1.4634 1.4511 35 1 3.7892 0.0439 -3.9551 36 1 5.5169 0.1021 -3.5306 37 1 5.6471 2.4281 -4.3800 38 1 3.9195 2.3698 -4.8045 39 1 5.9242 1.1917 -9.0669 40 1 6.2375 3.1260 -10.5557 41 1 7.2581 4.8106 -11.2468 42 1 5.5305 4.7541 -11.6718 43 1 6.4189 6.2937 -11.7618 44 1 5.3434 5.7672 -7.3178 45 1 5.0399 3.8357 -5.8235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457182009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = -103.084292 kcal Electronic energy + Delta-G solvation = -26380.275421 eV Core-core repulsion = 22489.355685 eV Total energy + Delta-G solvation = -3890.919736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01564 -40.58906 -38.58795 -38.33370 -36.63163 -33.95338 -33.49912 -32.17681 -31.30708 -30.81322 -28.14143 -27.30076 -26.78477 -25.71022 -23.82564 -23.20952 -22.91471 -20.92244 -19.30199 -18.71547 -18.33831 -17.93725 -17.20588 -17.16962 -16.93263 -16.64748 -16.50508 -16.24256 -16.06893 -15.68834 -15.60072 -15.31913 -14.78818 -14.65743 -14.52223 -14.27276 -13.85979 -13.61660 -13.35141 -13.28312 -13.00308 -12.85923 -12.81120 -12.64281 -12.47361 -12.42823 -12.36500 -12.13215 -12.07868 -11.93752 -11.77948 -11.19049 -11.02447 -10.52694 -10.34737 -10.12392 -10.08525 -9.42864 -8.24328 -8.22295 -5.92851 0.20548 0.27036 0.48901 1.42672 1.43481 1.52046 1.62940 1.99392 2.35733 2.37634 2.62048 2.95252 3.03040 3.23194 3.75772 3.84117 3.87288 3.93405 4.18146 4.22411 4.25831 4.30194 4.42651 4.44394 4.45884 4.52184 4.53548 4.58007 4.61488 4.66611 4.74969 4.79878 4.83085 4.91456 4.94915 4.96764 5.01751 5.24079 5.26238 5.38036 5.58249 5.60535 6.01865 6.39713 6.42821 6.45242 7.19197 7.60718 8.01967 8.79360 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.002316 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.476745 B =12087.363653 C =12818.211509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.066 3.934 4 C 0.104 3.896 5 N -0.436 5.436 6 C -0.337 4.337 7 H 0.094 0.906 8 C 0.013 3.987 9 N -0.894 5.894 10 Si 0.977 3.023 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.458 3.542 15 O -0.636 6.636 16 C -0.092 4.092 17 C -0.071 4.071 18 S -0.118 6.118 19 C -0.132 4.132 20 C -0.064 4.064 21 C -0.184 4.184 22 C 0.114 3.886 23 O -0.334 6.334 24 C 0.016 3.984 25 C -0.144 4.144 26 C -0.104 4.104 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.271 0.729 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.140 0.860 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 5.404 -17.744 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.011 4.011 4 C -0.020 4.020 5 N -0.153 5.153 6 C -0.464 4.464 7 H 0.112 0.888 8 C -0.190 4.190 9 N -0.532 5.532 10 Si 0.801 3.199 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.247 3.753 15 O -0.525 6.525 16 C -0.133 4.133 17 C -0.219 4.219 18 S 0.126 5.874 19 C -0.245 4.245 20 C -0.088 4.088 21 C -0.204 4.204 22 C 0.067 3.933 23 O -0.248 6.248 24 C -0.078 4.078 25 C -0.164 4.164 26 C -0.128 4.128 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.165 0.835 40 H 0.181 0.819 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.137 0.863 44 H 0.158 0.842 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.521 4.730 -17.562 18.251 hybrid contribution -0.354 0.725 0.790 1.129 sum -1.875 5.455 -16.772 17.736 Atomic orbital electron populations 1.22884 0.80802 1.03268 1.00247 1.88090 1.20280 1.27646 1.95278 1.22788 0.94292 0.84687 0.99346 1.21503 0.91693 0.98043 0.90733 1.43543 1.55672 1.06584 1.09491 1.19517 1.45791 0.80752 1.00359 0.88806 1.25957 0.93878 1.03620 0.95520 1.69912 1.31404 1.38350 1.13504 0.85188 0.79109 0.78247 0.77332 1.19765 1.21135 1.18888 1.20794 0.80242 0.86559 0.87705 1.90486 1.59992 1.15594 1.86475 1.20933 1.04296 0.97391 0.90692 1.23202 1.04896 1.00415 0.93417 1.85199 1.87558 1.10595 1.04069 1.21778 1.08331 0.96156 0.98206 1.20806 0.97346 1.00139 0.90486 1.21430 1.06383 0.90651 1.01943 1.19123 0.96649 0.86959 0.90599 1.86080 1.84781 1.31065 1.22870 1.23387 1.00958 1.04964 0.78512 1.20479 1.04660 0.99834 0.91429 1.21149 1.00199 0.91324 1.00087 0.88951 0.93060 0.94148 0.91640 0.95031 0.88301 0.92160 0.91975 0.88542 0.88717 0.90040 0.89726 0.83502 0.81945 0.91491 0.91455 0.86302 0.84224 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -16.41 10.18 -148.98 -1.52 -17.92 16 3 C 0.07 2.73 6.28 71.98 0.45 3.18 16 4 C 0.10 5.05 5.47 86.38 0.47 5.53 16 5 N -0.44 -21.96 2.52 -635.52 -1.60 -23.56 16 6 C -0.34 -16.98 8.23 84.04 0.69 -16.28 16 7 H 0.09 4.52 6.96 -2.91 -0.02 4.49 16 8 C 0.01 0.66 4.95 84.93 0.42 1.08 16 9 N -0.89 -47.74 11.34 21.66 0.25 -47.50 16 10 Si 0.98 40.69 29.61 68.60 2.03 42.72 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 13 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 14 C 0.46 22.07 7.62 87.66 0.67 22.74 16 15 O -0.64 -32.93 15.54 -3.08 -0.05 -32.98 16 16 C -0.09 -3.62 4.33 29.85 0.13 -3.49 16 17 C -0.07 -2.44 3.62 71.98 0.26 -2.18 16 18 S -0.12 -3.51 21.92 -56.49 -1.24 -4.75 16 19 C -0.13 -3.61 6.11 22.60 0.14 -3.47 16 20 C -0.06 -1.43 9.79 22.40 0.22 -1.21 16 21 C -0.18 -3.50 9.03 22.35 0.20 -3.30 16 22 C 0.11 2.53 6.69 22.50 0.15 2.68 16 23 O -0.33 -6.53 10.50 -93.56 -0.98 -7.51 16 24 C 0.02 0.16 9.81 113.37 1.11 1.27 16 25 C -0.14 -3.58 9.98 22.35 0.22 -3.35 16 26 C -0.10 -2.88 9.36 22.40 0.21 -2.67 16 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 5.20 5.37 -2.39 -0.01 5.19 16 33 H 0.06 2.98 7.36 -2.38 -0.02 2.96 16 34 H 0.27 13.69 8.32 -92.71 -0.77 12.92 16 35 H 0.10 3.60 7.68 -2.39 -0.02 3.58 16 36 H 0.09 3.76 8.10 -2.39 -0.02 3.74 16 37 H 0.08 2.96 7.68 -2.39 -0.02 2.94 16 38 H 0.08 2.96 7.73 -2.39 -0.02 2.94 16 39 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.16 1.95 6.29 -2.91 -0.02 1.93 16 41 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 42 H 0.07 0.53 7.67 -2.39 -0.02 0.51 16 43 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.13 3.66 5.87 -2.91 -0.02 3.64 16 Total: -1.00 -64.77 386.83 4.48 -60.29 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.99 Total: 28.71 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.60 Total: 2.50 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.36 Total: -71.06 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -2.55 Total: -58.41 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.24 Total: -4.75 kcal Total: -64.77 4.48 -60.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.798 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds