Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99862 * 2 1 4 4 O 1.20822 * 120.00256 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99459 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47051 * 180.02562 * 5 3 2 7 7 C 1.36710 * 119.99687 * 263.01989 * 6 5 3 8 8 H 1.07998 * 119.99691 * 200.90517 * 7 6 5 9 9 C 1.39128 * 120.00062 * 20.89727 * 7 6 5 10 10 N 1.31316 * 120.00276 * 11.66739 * 9 7 6 11 11 Si 1.86804 * 119.99730 * 191.66620 * 9 7 6 12 12 H 1.48504 * 109.46882 * 89.99973 * 11 9 7 13 13 H 1.48499 * 109.46957 * 210.00045 * 11 9 7 14 14 H 1.48499 * 109.46887 * 330.00209 * 11 9 7 15 15 C 1.34775 * 120.00295 * 83.01013 * 6 5 3 16 16 O 1.21770 * 119.99634 * 0.02562 * 15 6 5 17 17 C 1.46175 * 119.99949 * 180.02562 * 15 6 5 18 18 C 1.35064 * 119.99772 * 173.67988 * 17 15 6 19 19 C 1.47046 * 119.99903 * 348.15342 * 18 17 15 20 20 C 1.40918 * 119.78349 * 132.33050 * 19 18 17 21 21 C 1.35623 * 120.82083 * 180.02562 * 20 19 18 22 22 C 1.40777 * 120.07227 * 359.97438 * 21 20 19 23 23 C 1.40434 * 121.01224 * 180.02562 * 22 21 20 24 24 C 1.36174 * 119.73688 * 179.97438 * 23 22 21 25 25 C 1.39362 * 121.01374 * 0.02562 * 24 23 22 26 26 C 1.36093 * 120.94511 * 359.97438 * 25 24 23 27 27 C 1.40688 * 119.65917 * 0.02562 * 26 25 24 28 28 C 1.38841 * 119.78672 * 312.05649 * 19 18 17 29 29 H 1.09000 * 109.47356 * 60.00002 * 1 2 3 30 30 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47274 * 300.00176 * 1 2 3 32 32 H 1.09000 * 109.47641 * 60.00191 * 5 3 2 33 33 H 1.08997 * 109.47484 * 299.99599 * 5 3 2 34 34 H 0.96996 * 120.00356 * 179.97438 * 10 9 7 35 35 H 1.07992 * 120.00155 * 353.67304 * 17 15 6 36 36 H 1.08000 * 119.99885 * 168.42841 * 18 17 15 37 37 H 1.08000 * 119.58731 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.96029 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.13467 * 359.95789 * 23 22 21 40 40 H 1.07995 * 119.49476 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.52605 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.16715 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.28787 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.3140 3.2946 -1.1739 8 1 4.9264 4.1841 -1.1634 9 6 3.8633 2.7744 -2.3830 10 7 2.9407 1.8400 -2.3927 11 14 4.5708 3.4052 -3.9927 12 1 5.7536 2.5890 -4.3671 13 1 3.5420 3.3041 -5.0588 14 1 4.9792 4.8238 -3.8316 15 6 4.0362 3.3659 1.1597 16 8 3.7405 2.8181 2.2063 17 6 4.4502 4.7678 1.1601 18 6 4.3831 5.4915 2.2985 19 6 3.6592 4.9628 3.4641 20 6 4.2612 4.9995 4.7377 21 6 3.6128 4.5173 5.8270 22 6 2.3218 3.9715 5.6952 23 6 1.6323 3.4672 6.8099 24 6 0.3843 2.9455 6.6528 25 6 -0.2235 2.9026 5.3994 26 6 0.4132 3.3816 4.2961 27 6 1.7038 3.9281 4.4194 28 6 2.3847 4.4358 3.3037 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.9564 0.7805 -0.8891 33 1 3.9556 0.7809 0.8908 34 1 2.6262 1.4776 -3.2356 35 1 4.8099 5.2249 0.2501 36 1 4.8573 6.4604 2.3512 37 1 5.2515 5.4162 4.8476 38 1 4.0875 4.5521 6.7964 39 1 2.0901 3.4927 7.7877 40 1 -0.1426 2.5591 7.5127 41 1 -1.2139 2.4832 5.3023 42 1 -0.0697 3.3424 3.3309 43 1 1.9235 4.4132 2.3273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492613871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = -32.705640 kcal Electronic energy + Delta-G solvation = -29681.732777 eV Core-core repulsion = 25658.420937 eV Total energy + Delta-G solvation = -4023.311840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.93584 -39.43469 -38.37724 -36.39851 -35.33610 -34.63263 -32.87547 -31.90561 -31.62011 -29.59640 -28.81603 -27.93035 -26.33796 -24.94977 -23.58451 -22.60488 -21.54303 -21.20659 -19.85438 -18.99266 -17.37566 -16.81275 -16.66992 -16.53407 -16.14525 -15.49888 -15.29080 -15.13119 -14.56858 -14.40051 -14.11820 -13.86906 -13.42528 -13.33803 -13.03982 -12.91325 -12.81544 -12.49554 -12.45704 -12.26452 -11.98363 -11.58083 -11.41208 -11.37332 -11.27927 -11.00156 -10.81142 -10.64083 -10.56229 -10.44334 -10.32622 -9.83795 -9.63287 -9.57920 -9.07463 -8.87427 -8.58505 -8.04408 -7.88360 -7.03633 -6.57206 -4.08447 0.90997 1.32210 2.07582 2.61918 3.05686 3.12184 3.15003 3.47037 3.62198 3.70999 4.00374 4.35934 4.59496 4.68566 4.97985 5.03020 5.16356 5.23572 5.28183 5.43646 5.65442 5.67919 5.69113 5.76071 5.76693 5.82480 5.90369 5.93038 6.11656 6.18245 6.23995 6.37641 6.39898 6.46508 6.61926 6.66151 6.69172 6.77904 6.83124 6.93560 7.04955 7.22637 7.27662 7.28221 7.43889 7.49099 7.55861 8.16478 8.89445 9.09484 9.31616 9.74989 10.48201 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.004309 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.269985 B = 6496.352600 C = 8155.060580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.490 3.510 4 O -0.503 6.503 5 C 0.155 3.845 6 N -0.415 5.415 7 C -0.329 4.329 8 H 0.106 0.894 9 C 0.036 3.964 10 N -0.873 5.873 11 Si 0.932 3.068 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.482 3.518 16 O -0.586 6.586 17 C -0.145 4.145 18 C -0.094 4.094 19 C -0.044 4.044 20 C -0.091 4.091 21 C -0.132 4.132 22 C -0.049 4.049 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.135 4.135 26 C -0.090 4.090 27 C -0.050 4.050 28 C -0.022 4.022 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.274 0.726 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 1.793 8.954 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.332 3.668 4 O -0.388 6.388 5 C 0.030 3.970 6 N -0.132 5.132 7 C -0.457 4.457 8 H 0.123 0.877 9 C -0.168 4.168 10 N -0.511 5.511 11 Si 0.759 3.241 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.274 3.726 16 O -0.473 6.473 17 C -0.165 4.165 18 C -0.114 4.114 19 C -0.044 4.044 20 C -0.109 4.109 21 C -0.150 4.150 22 C -0.049 4.049 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.108 4.108 27 C -0.050 4.050 28 C -0.041 4.041 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.719 1.676 9.255 9.562 hybrid contribution -0.005 0.182 -1.322 1.334 sum -1.724 1.858 7.934 8.329 Atomic orbital electron populations 1.22921 0.78757 1.01801 1.01542 1.86459 1.21618 1.35513 1.85662 1.23852 0.92174 0.80500 0.70307 1.90494 1.66537 1.36376 1.45440 1.20503 0.87315 0.85616 1.03611 1.43336 1.55328 1.08050 1.06487 1.19728 1.30730 1.12596 0.82650 0.87684 1.25332 0.94815 0.96677 1.00016 1.69680 1.25663 1.27672 1.28073 0.85835 0.78465 0.79289 0.80556 1.20112 1.20853 1.19313 1.18152 0.83232 0.87258 0.83946 1.90777 1.54792 1.70558 1.31192 1.23256 1.00863 0.94734 0.97690 1.22088 0.98268 0.98902 0.92170 1.18706 0.93794 0.99236 0.92670 1.20796 0.98993 0.99252 0.91872 1.20650 0.94368 1.01503 0.98481 1.18043 0.94643 0.99355 0.92824 1.20919 0.95151 0.99558 0.97550 1.20721 0.95699 1.00642 0.97138 1.20700 1.00094 1.01686 0.92838 1.21124 0.93915 0.97090 0.98699 1.17982 0.94450 0.99554 0.92983 1.21351 0.93668 0.92261 0.96779 0.92692 0.89636 0.93185 0.85488 0.90297 0.91474 0.85167 0.85779 0.86588 0.86446 0.86311 0.86732 0.86644 0.85992 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.12 10.57 -39.25 -0.41 -8.53 16 3 C 0.49 12.01 6.10 36.00 0.22 12.23 16 4 O -0.50 -13.60 15.78 -18.75 -0.30 -13.90 16 5 C 0.16 3.69 5.11 -5.19 -0.03 3.67 16 6 N -0.42 -10.17 2.18 -117.77 -0.26 -10.42 16 7 C -0.33 -7.95 9.10 -15.05 -0.14 -8.09 16 8 H 0.11 2.35 5.94 -52.49 -0.31 2.04 16 9 C 0.04 0.87 5.09 -17.44 -0.09 0.78 16 10 N -0.87 -21.94 8.95 55.50 0.50 -21.45 16 11 Si 0.93 18.70 29.57 -169.99 -5.03 13.67 16 12 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 15 C 0.48 11.43 6.50 -13.08 -0.09 11.34 16 16 O -0.59 -14.76 12.21 5.13 0.06 -14.70 16 17 C -0.14 -2.89 9.19 -37.53 -0.34 -3.23 16 18 C -0.09 -1.63 9.76 -37.14 -0.36 -1.99 16 19 C -0.04 -0.82 4.34 -105.09 -0.46 -1.28 16 20 C -0.09 -1.48 9.68 -39.50 -0.38 -1.87 16 21 C -0.13 -2.07 9.73 -39.56 -0.38 -2.45 16 22 C -0.05 -0.83 5.75 -106.74 -0.61 -1.45 16 23 C -0.11 -1.65 9.75 -39.50 -0.39 -2.03 16 24 C -0.12 -1.70 9.95 -39.91 -0.40 -2.10 16 25 C -0.14 -2.01 9.95 -39.93 -0.40 -2.40 16 26 C -0.09 -1.58 9.77 -39.43 -0.39 -1.97 16 27 C -0.05 -0.95 5.74 -106.85 -0.61 -1.56 16 28 C -0.02 -0.45 6.53 -38.61 -0.25 -0.71 16 29 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 32 H 0.13 3.02 6.30 -51.93 -0.33 2.69 16 33 H 0.08 1.79 7.64 -51.93 -0.40 1.40 16 34 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.13 2.40 6.16 -52.49 -0.32 2.07 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.12 2.74 7.44 -52.48 -0.39 2.35 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -30.88 365.76 -9.06 -39.94 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.11 Total: 11.14 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -4.03 Total: -1.26 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.24 Total: -31.87 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.65 Total: -37.13 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.88 -9.06 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492613871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.235 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds