Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99862 * 2 1 4 4 O 1.20822 * 120.00256 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99459 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47051 * 180.02562 * 5 3 2 7 7 C 1.36710 * 119.99687 * 263.01989 * 6 5 3 8 8 H 1.07998 * 119.99691 * 200.90517 * 7 6 5 9 9 C 1.39128 * 120.00062 * 20.89727 * 7 6 5 10 10 N 1.31316 * 120.00276 * 11.66739 * 9 7 6 11 11 Si 1.86804 * 119.99730 * 191.66620 * 9 7 6 12 12 H 1.48504 * 109.46882 * 89.99973 * 11 9 7 13 13 H 1.48499 * 109.46957 * 210.00045 * 11 9 7 14 14 H 1.48499 * 109.46887 * 330.00209 * 11 9 7 15 15 C 1.34775 * 120.00295 * 83.01013 * 6 5 3 16 16 O 1.21770 * 119.99634 * 0.02562 * 15 6 5 17 17 C 1.46175 * 119.99949 * 180.02562 * 15 6 5 18 18 C 1.35064 * 119.99772 * 173.67988 * 17 15 6 19 19 C 1.47046 * 119.99903 * 348.15342 * 18 17 15 20 20 C 1.40918 * 119.78349 * 132.33050 * 19 18 17 21 21 C 1.35623 * 120.82083 * 180.02562 * 20 19 18 22 22 C 1.40777 * 120.07227 * 359.97438 * 21 20 19 23 23 C 1.40434 * 121.01224 * 180.02562 * 22 21 20 24 24 C 1.36174 * 119.73688 * 179.97438 * 23 22 21 25 25 C 1.39362 * 121.01374 * 0.02562 * 24 23 22 26 26 C 1.36093 * 120.94511 * 359.97438 * 25 24 23 27 27 C 1.40688 * 119.65917 * 0.02562 * 26 25 24 28 28 C 1.38841 * 119.78672 * 312.05649 * 19 18 17 29 29 H 1.09000 * 109.47356 * 60.00002 * 1 2 3 30 30 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47274 * 300.00176 * 1 2 3 32 32 H 1.09000 * 109.47641 * 60.00191 * 5 3 2 33 33 H 1.08997 * 109.47484 * 299.99599 * 5 3 2 34 34 H 0.96996 * 120.00356 * 179.97438 * 10 9 7 35 35 H 1.07992 * 120.00155 * 353.67304 * 17 15 6 36 36 H 1.08000 * 119.99885 * 168.42841 * 18 17 15 37 37 H 1.08000 * 119.58731 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.96029 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.13467 * 359.95789 * 23 22 21 40 40 H 1.07995 * 119.49476 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.52605 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.16715 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.28787 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.3140 3.2946 -1.1739 8 1 4.9264 4.1841 -1.1634 9 6 3.8633 2.7744 -2.3830 10 7 2.9407 1.8400 -2.3927 11 14 4.5708 3.4052 -3.9927 12 1 5.7536 2.5890 -4.3671 13 1 3.5420 3.3041 -5.0588 14 1 4.9792 4.8238 -3.8316 15 6 4.0362 3.3659 1.1597 16 8 3.7405 2.8181 2.2063 17 6 4.4502 4.7678 1.1601 18 6 4.3831 5.4915 2.2985 19 6 3.6592 4.9628 3.4641 20 6 4.2612 4.9995 4.7377 21 6 3.6128 4.5173 5.8270 22 6 2.3218 3.9715 5.6952 23 6 1.6323 3.4672 6.8099 24 6 0.3843 2.9455 6.6528 25 6 -0.2235 2.9026 5.3994 26 6 0.4132 3.3816 4.2961 27 6 1.7038 3.9281 4.4194 28 6 2.3847 4.4358 3.3037 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.9564 0.7805 -0.8891 33 1 3.9556 0.7809 0.8908 34 1 2.6262 1.4776 -3.2356 35 1 4.8099 5.2249 0.2501 36 1 4.8573 6.4604 2.3512 37 1 5.2515 5.4162 4.8476 38 1 4.0875 4.5521 6.7964 39 1 2.0901 3.4927 7.7877 40 1 -0.1426 2.5591 7.5127 41 1 -1.2139 2.4832 5.3023 42 1 -0.0697 3.3424 3.3309 43 1 1.9235 4.4132 2.3273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492613871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -47.744958 kcal Electronic energy + Delta-G solvation = -29682.384931 eV Core-core repulsion = 25658.420937 eV Total energy + Delta-G solvation = -4023.963994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45848 -41.06557 -40.10723 -37.83510 -37.07000 -36.46241 -34.29246 -33.50231 -33.17009 -31.00263 -30.35765 -29.36008 -27.94159 -26.73252 -25.02177 -23.88730 -22.90108 -22.71508 -21.62130 -20.69879 -18.83941 -18.55212 -18.36581 -18.04389 -17.50739 -17.28626 -17.00677 -16.60706 -16.22677 -15.88926 -15.60016 -15.32406 -15.04266 -14.71238 -14.39579 -14.33237 -14.22205 -14.14263 -13.91779 -13.86936 -13.47609 -13.19376 -13.10613 -12.89983 -12.69023 -12.57948 -12.48286 -12.10660 -12.02064 -11.80765 -11.68235 -11.60411 -11.50274 -10.96282 -10.93195 -10.38849 -10.21278 -9.84949 -9.21632 -8.44700 -8.35379 -5.96282 -0.41265 0.03304 0.65116 1.31270 1.47045 1.48262 1.58670 1.73452 1.94682 2.22816 2.31314 2.61919 2.95267 3.23115 3.29163 3.75232 3.91654 4.03143 4.11504 4.20074 4.26890 4.29484 4.30986 4.35871 4.36604 4.47617 4.52263 4.56613 4.62917 4.66257 4.72627 4.78506 4.94467 5.12586 5.15062 5.30721 5.38845 5.40218 5.45066 5.54377 5.59941 5.62204 5.71534 5.74010 5.89573 6.04161 6.22245 6.32942 7.05902 7.20820 7.51213 7.93789 8.67954 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.004309 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.269985 B = 6496.352600 C = 8155.060580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.378 6.378 3 C 0.491 3.509 4 O -0.538 6.538 5 C 0.156 3.844 6 N -0.433 5.433 7 C -0.347 4.347 8 H 0.119 0.881 9 C -0.008 4.008 10 N -0.904 5.904 11 Si 1.001 2.999 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.257 1.257 15 C 0.476 3.524 16 O -0.609 6.609 17 C -0.183 4.183 18 C -0.058 4.058 19 C -0.062 4.062 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.071 4.071 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.073 4.073 28 C -0.053 4.053 29 H 0.045 0.955 30 H 0.134 0.866 31 H 0.047 0.953 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.271 0.729 35 H 0.143 0.857 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 2.429 11.661 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.334 3.666 4 O -0.426 6.426 5 C 0.030 3.970 6 N -0.150 5.150 7 C -0.474 4.474 8 H 0.136 0.864 9 C -0.209 4.209 10 N -0.543 5.543 11 Si 0.824 3.176 12 H -0.193 1.193 13 H -0.218 1.218 14 H -0.181 1.181 15 C 0.269 3.731 16 O -0.497 6.497 17 C -0.203 4.203 18 C -0.078 4.078 19 C -0.062 4.062 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.071 4.071 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.150 4.150 27 C -0.073 4.073 28 C -0.072 4.072 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.161 0.839 36 H 0.189 0.811 37 H 0.168 0.832 38 H 0.177 0.823 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.119 0.881 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.784 2.308 11.975 12.220 hybrid contribution -0.452 -0.054 -1.906 1.960 sum -1.236 2.253 10.069 10.391 Atomic orbital electron populations 1.23265 0.76304 1.04808 1.01010 1.86424 1.24033 1.33993 1.85083 1.24008 0.92534 0.80678 0.69338 1.90467 1.67328 1.37627 1.47200 1.20475 0.87133 0.86095 1.03263 1.43524 1.56213 1.08246 1.07018 1.20133 1.31136 1.13272 0.82831 0.86380 1.26214 0.94859 0.96834 1.02972 1.69799 1.27017 1.29088 1.28377 0.84798 0.77453 0.79282 0.76041 1.19264 1.21806 1.18132 1.18831 0.82152 0.88705 0.83385 1.90744 1.55540 1.71529 1.31889 1.23205 1.04230 0.93376 0.99490 1.22635 0.94947 0.99726 0.90511 1.19033 0.93353 0.99314 0.94468 1.21125 1.00427 0.99723 0.90764 1.21156 0.93488 0.99119 1.00062 1.18455 0.95773 1.00150 0.92696 1.21383 0.95180 0.97820 0.98198 1.21193 0.95723 0.99700 0.97590 1.21086 1.00827 0.99488 0.92592 1.21136 0.94547 1.00148 0.99143 1.18224 0.95150 1.00116 0.93839 1.21100 0.95299 0.95189 0.95566 0.93628 0.84784 0.93387 0.85867 0.90198 0.91855 0.83893 0.81076 0.83232 0.82329 0.82412 0.82639 0.84147 0.88146 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 10.56 113.37 1.20 2.61 16 2 O -0.38 -17.02 10.57 -51.40 -0.54 -17.56 16 3 C 0.49 25.51 6.10 71.24 0.43 25.94 16 4 O -0.54 -31.14 15.78 21.98 0.35 -30.80 16 5 C 0.16 7.88 5.11 85.63 0.44 8.32 16 6 N -0.43 -22.28 2.18 -644.69 -1.41 -23.69 16 7 C -0.35 -17.30 9.10 84.15 0.77 -16.53 16 8 H 0.12 5.38 5.94 -2.91 -0.02 5.36 16 9 C -0.01 -0.39 5.09 84.98 0.43 0.05 16 10 N -0.90 -47.35 8.95 21.69 0.19 -47.16 16 11 Si 1.00 38.95 29.57 68.60 2.03 40.97 16 12 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 13 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 15 C 0.48 23.70 6.50 86.30 0.56 24.26 16 16 O -0.61 -32.34 12.21 -4.57 -0.06 -32.40 16 17 C -0.18 -7.45 9.19 23.60 0.22 -7.24 16 18 C -0.06 -1.99 9.76 23.85 0.23 -1.76 16 19 C -0.06 -2.31 4.34 -20.17 -0.09 -2.40 16 20 C -0.10 -3.12 9.68 22.32 0.22 -2.90 16 21 C -0.12 -3.42 9.73 22.28 0.22 -3.20 16 22 C -0.07 -2.31 5.75 -21.23 -0.12 -2.43 16 23 C -0.11 -2.74 9.75 22.32 0.22 -2.52 16 24 C -0.12 -2.99 9.95 22.06 0.22 -2.77 16 25 C -0.12 -3.51 9.95 22.04 0.22 -3.29 16 26 C -0.13 -4.88 9.77 22.37 0.22 -4.66 16 27 C -0.07 -2.90 5.74 -21.31 -0.12 -3.02 16 28 C -0.05 -2.30 6.53 22.90 0.15 -2.15 16 29 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 32 H 0.12 6.21 6.30 -2.39 -0.02 6.20 16 33 H 0.08 3.88 7.64 -2.39 -0.02 3.86 16 34 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.14 5.33 6.16 -2.91 -0.02 5.31 16 36 H 0.17 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 39 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.10 3.97 8.06 -2.91 -0.02 3.94 16 43 H 0.08 3.93 7.44 -2.91 -0.02 3.91 16 Total: -1.00 -73.12 365.76 7.00 -66.12 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: 1.04 Total: 38.20 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.40 Total: 6.31 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.21 Total: -70.85 kcal Atomic # 8 Polarization: -80.50 SS G_CDS: -0.25 Total: -80.76 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.97 kcal Total: -73.12 7.00 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492613871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.374 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds