Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00074 * 2 1 4 4 H 1.08996 * 109.47389 * 329.99972 * 3 2 1 5 5 C 1.52999 * 109.46886 * 90.00213 * 3 2 1 6 6 C 1.52996 * 109.47584 * 59.99918 * 5 3 2 7 7 C 1.53000 * 109.47276 * 59.99623 * 6 5 3 8 8 C 1.52999 * 109.47122 * 300.00659 * 7 6 5 9 9 C 1.52996 * 109.47377 * 59.99861 * 8 7 6 10 10 H 1.09000 * 109.47049 * 59.99898 * 9 8 7 11 11 S 1.81395 * 109.47148 * 180.02562 * 9 8 7 12 12 O 1.42101 * 110.54468 * 186.00756 * 11 9 8 13 13 O 1.42101 * 110.54346 * 49.25866 * 11 9 8 14 14 N 1.65601 * 104.45068 * 297.63204 * 11 9 8 15 15 C 1.38853 * 120.00039 * 298.81126 * 14 11 9 16 16 C 1.39572 * 119.84432 * 132.52173 * 15 14 11 17 17 C 1.36339 * 120.15917 * 179.97438 * 16 15 14 18 18 C 1.40888 * 119.83771 * 0.02748 * 17 16 15 19 19 C 1.41137 * 120.15529 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99703 * 339.53986 * 19 18 17 21 21 C 1.39865 * 120.00031 * 159.53405 * 19 18 17 22 22 N 1.30906 * 120.00307 * 332.76082 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 152.75513 * 21 19 18 24 24 H 1.48503 * 109.47311 * 265.01753 * 23 21 19 25 25 H 1.48496 * 109.47435 * 145.01559 * 23 21 19 26 26 H 1.48502 * 109.47070 * 25.01641 * 23 21 19 27 27 C 1.40882 * 119.68993 * 0.26735 * 18 17 16 28 28 C 1.36349 * 119.83616 * 359.42554 * 27 18 17 29 29 H 1.08999 * 109.47449 * 300.00343 * 1 2 3 30 30 H 1.09003 * 109.46762 * 59.99948 * 1 2 3 31 31 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47161 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47184 * 299.99591 * 5 3 2 34 34 H 1.08999 * 109.47270 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.46676 * 300.00000 * 6 5 3 36 36 H 1.09000 * 109.46961 * 60.00551 * 7 6 5 37 37 H 1.09001 * 109.46849 * 180.02562 * 7 6 5 38 38 H 1.09006 * 109.46651 * 299.99252 * 8 7 6 39 39 H 1.08997 * 109.46818 * 180.02562 * 8 7 6 40 40 H 0.96998 * 120.00025 * 118.79779 * 14 11 9 41 41 H 1.07990 * 119.91955 * 0.02562 * 16 15 14 42 42 H 1.07995 * 120.08360 * 180.02562 * 17 16 15 43 43 H 0.96997 * 119.99824 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.08411 * 179.72887 * 27 18 17 45 45 H 1.07995 * 119.92137 * 180.27388 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2177 1.7712 1.4425 6 6 3.1515 0.7972 2.1638 7 6 4.5001 0.7549 1.4425 8 6 4.2927 0.2891 0.0000 9 6 3.3590 1.2631 -0.7212 10 1 3.8024 2.2589 -0.7212 11 16 3.1125 0.7104 -2.4312 12 8 2.3616 1.6701 -3.1622 13 8 2.7697 -0.6682 -2.4651 14 7 4.6228 0.7725 -3.1074 15 6 5.2998 1.9824 -3.1846 16 6 6.6342 2.0585 -2.7828 17 6 7.3052 3.2431 -2.8563 18 6 6.6481 4.3921 -3.3388 19 6 7.3364 5.6217 -3.4183 20 1 8.2253 5.7821 -2.8262 21 6 6.8675 6.6323 -4.2639 22 7 6.1764 6.3238 -5.3320 23 14 7.2271 8.4223 -3.8689 24 1 6.0827 9.0041 -3.1224 25 1 7.4294 9.1769 -5.1317 26 1 8.4551 8.5088 -3.0384 27 6 5.2992 4.3092 -3.7368 28 6 4.6425 3.1165 -3.6637 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.6607 2.7672 1.4426 33 1 1.2569 1.8013 1.9564 34 1 3.2989 1.1289 3.1916 35 1 2.7080 -0.1985 2.1637 36 1 4.9436 1.7506 1.4426 37 1 5.1652 0.0606 1.9562 38 1 3.8493 -0.7067 0.0001 39 1 5.2536 0.2585 -0.5136 40 1 5.0347 -0.0364 -3.4494 41 1 7.1367 1.1768 -2.4135 42 1 8.3379 3.3005 -2.5454 43 1 5.8509 7.0248 -5.9182 44 1 4.7880 5.1871 -4.1035 45 1 3.6097 3.0504 -3.9725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590597987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -129.805874 kcal Electronic energy + Delta-G solvation = -28660.104140 eV Core-core repulsion = 24768.025670 eV Total energy + Delta-G solvation = -3892.078471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -40.48144 -39.81372 -38.14811 -37.14302 -37.00126 -36.45477 -34.59825 -32.11044 -31.40149 -31.17426 -30.55285 -27.51060 -26.53629 -24.15205 -23.65991 -23.05963 -22.63172 -20.88954 -20.21891 -19.26421 -18.64693 -18.41367 -17.85031 -17.39014 -17.03596 -16.51412 -16.41425 -16.19038 -15.79725 -15.33034 -15.18073 -14.64452 -14.54614 -14.37573 -14.09814 -13.87838 -13.75685 -13.62263 -13.59632 -13.21350 -13.10606 -13.04393 -12.98709 -12.80387 -12.69200 -12.60703 -12.32974 -12.26510 -12.19830 -11.67444 -11.55785 -11.44122 -11.27274 -11.18268 -10.92590 -10.86358 -10.47773 -9.49098 -9.08608 -8.71809 -6.26869 -0.74749 0.89076 1.16079 1.40163 1.51838 1.54636 1.75206 2.19486 2.53817 2.62396 2.71944 3.22704 3.38150 3.62712 3.69558 3.89070 4.02570 4.15085 4.23581 4.31554 4.41691 4.46617 4.48292 4.50191 4.56897 4.63159 4.71030 4.79253 4.90664 4.91003 5.07977 5.13209 5.13406 5.19507 5.23670 5.27371 5.32422 5.33750 5.53837 5.69803 5.77562 6.04426 6.05540 6.10738 6.29665 6.42034 6.67403 6.90100 7.03378 8.22738 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.003522 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.135170 B = 7948.052126 C = 8313.591174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.394 6.394 3 C 0.094 3.906 4 H 0.073 0.927 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.096 4.096 9 C -0.564 4.564 10 H 0.150 0.850 11 S 2.603 3.397 12 O -0.997 6.997 13 O -0.976 6.976 14 N -1.033 6.033 15 C -0.009 4.009 16 C -0.073 4.073 17 C -0.230 4.230 18 C 0.084 3.916 19 C -0.488 4.488 20 H 0.085 0.915 21 C 0.041 3.959 22 N -0.806 5.806 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.252 1.252 27 C -0.187 4.187 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.419 0.581 41 H 0.131 0.869 42 H 0.109 0.891 43 H 0.292 0.708 44 H 0.095 0.905 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -7.590 13.854 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.313 6.313 3 C 0.034 3.966 4 H 0.091 0.909 5 C -0.166 4.166 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.134 4.134 9 C -0.676 4.676 10 H 0.168 0.832 11 S 2.703 3.297 12 O -0.987 6.987 13 O -0.966 6.966 14 N -0.785 5.785 15 C -0.105 4.105 16 C -0.095 4.095 17 C -0.250 4.250 18 C 0.081 3.919 19 C -0.516 4.516 20 H 0.104 0.896 21 C -0.177 4.177 22 N -0.430 5.430 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.176 1.176 27 C -0.207 4.207 28 C -0.147 4.147 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.257 0.743 41 H 0.149 0.851 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.938 -7.873 13.192 16.856 hybrid contribution 0.348 1.038 -0.398 1.165 sum -6.590 -6.834 12.794 15.932 Atomic orbital electron populations 1.23146 0.79402 1.04559 1.01169 1.87986 1.21457 1.26653 1.95224 1.21900 0.90452 0.85729 0.98505 0.90880 1.21935 1.01676 1.00174 0.92853 1.21446 0.94667 0.99882 0.99050 1.21478 0.98005 1.02102 0.93256 1.21278 0.97448 0.97043 0.97679 1.30304 1.04823 1.12278 1.20233 0.83228 1.05335 0.73107 0.73416 0.77864 1.93499 1.70982 1.64454 1.69790 1.93504 1.82238 1.33301 1.87555 1.52298 1.37939 1.14091 1.74149 1.16710 0.94541 0.84679 1.14522 1.20577 0.93063 0.97578 0.98269 1.20779 0.99402 0.92675 1.12153 1.17995 0.91578 0.93114 0.89210 1.19880 1.11373 0.98295 1.22087 0.89646 1.26833 0.92553 1.06019 0.92313 1.69962 1.26647 1.37855 1.08545 0.85267 0.80114 0.75811 0.79076 1.18842 1.19414 1.17556 1.20767 0.95110 0.96674 1.08155 1.21203 1.00115 0.93795 0.99557 0.91251 0.94321 0.87782 0.90129 0.89558 0.90116 0.91452 0.91605 0.89860 0.90118 0.90110 0.74349 0.85092 0.87246 0.89743 0.88677 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 10.82 113.37 1.23 1.48 16 2 O -0.39 -9.98 8.13 -145.38 -1.18 -11.16 16 3 C 0.09 2.30 2.35 30.60 0.07 2.37 16 4 H 0.07 1.77 7.79 -2.39 -0.02 1.76 16 5 C -0.13 -2.38 5.63 30.59 0.17 -2.21 16 6 C -0.11 -1.97 5.78 30.59 0.18 -1.79 16 7 C -0.11 -2.11 5.92 30.59 0.18 -1.93 16 8 C -0.10 -2.30 4.93 30.59 0.15 -2.15 16 9 C -0.56 -15.67 2.41 30.59 0.07 -15.59 16 10 H 0.15 4.20 8.13 -2.39 -0.02 4.19 16 11 S 2.60 91.17 4.56 -56.49 -0.26 90.91 16 12 O -1.00 -42.18 15.17 -127.65 -1.94 -44.11 16 13 O -0.98 -36.56 17.33 -124.32 -2.15 -38.72 16 14 N -1.03 -35.97 5.44 -51.06 -0.28 -36.25 16 15 C -0.01 -0.35 5.99 38.67 0.23 -0.12 16 16 C -0.07 -2.87 9.90 22.15 0.22 -2.66 16 17 C -0.23 -10.25 9.74 22.48 0.22 -10.03 16 18 C 0.08 4.30 5.59 -21.27 -0.12 4.18 16 19 C -0.49 -24.82 8.98 23.38 0.21 -24.61 16 20 H 0.09 4.12 7.97 -2.91 -0.02 4.10 16 21 C 0.04 1.99 4.94 85.22 0.42 2.41 16 22 N -0.81 -41.14 11.31 21.82 0.25 -40.89 16 23 Si 0.98 36.23 29.64 68.60 2.03 38.26 16 24 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 25 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 26 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 27 C -0.19 -9.74 8.70 22.48 0.20 -9.54 16 28 C -0.13 -6.01 9.15 22.15 0.20 -5.81 16 29 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 30 H 0.04 0.77 8.09 -2.39 -0.02 0.75 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.29 7.87 -2.39 -0.02 1.27 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.24 7.68 -2.39 -0.02 1.22 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 2.01 7.60 -2.38 -0.02 1.99 16 39 H 0.08 1.86 8.01 -2.39 -0.02 1.84 16 40 H 0.42 12.56 8.91 -96.75 -0.86 11.69 16 41 H 0.13 4.10 8.06 -2.92 -0.02 4.08 16 42 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 43 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 44 H 0.10 5.24 6.23 -2.91 -0.02 5.22 16 45 H 0.11 5.57 5.67 -2.91 -0.02 5.55 16 Total: -1.00 -65.68 370.68 0.24 -65.43 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: 0.14 Total: 42.52 kcal Atomic # 6 Polarization: -69.63 SS G_CDS: 3.63 Total: -66.00 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -0.03 Total: -77.14 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -5.27 Total: -93.99 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Atomic # 16 Polarization: 91.17 SS G_CDS: -0.26 Total: 90.91 kcal Total: -65.68 0.24 -65.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590597987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.372 kcal (2) G-P(sol) polarization free energy of solvation -65.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds