Wall clock time and date at job start Sat Apr 11 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99935 * 2 1 4 4 C 1.52992 * 109.47056 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47576 * 64.99889 * 4 3 2 6 6 C 1.46499 * 120.00117 * 275.00135 * 5 4 3 7 7 C 1.50697 * 109.47343 * 274.99777 * 6 5 4 8 8 H 1.08007 * 119.99835 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00180 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99823 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00187 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47278 * 89.99887 * 11 9 7 13 13 H 1.48494 * 109.47450 * 210.00327 * 11 9 7 14 14 H 1.48500 * 109.47151 * 330.00213 * 11 9 7 15 15 S 1.65608 * 120.00164 * 94.99746 * 5 4 3 16 16 O 1.42104 * 106.39724 * 23.54333 * 15 5 4 17 17 O 1.42097 * 106.40199 * 156.46245 * 15 5 4 18 18 C 1.76195 * 107.21632 * 270.00503 * 15 5 4 19 19 C 1.38239 * 120.00286 * 269.72172 * 18 15 5 20 20 C 1.38227 * 120.00279 * 179.79052 * 19 18 15 21 21 C 1.38235 * 119.99994 * 0.44199 * 20 19 18 22 22 C 1.50702 * 120.00002 * 179.83539 * 21 20 19 23 23 C 1.53001 * 117.50034 * 8.72304 * 22 21 20 24 24 C 1.53003 * 117.49954 * 300.06504 * 22 21 20 25 25 C 1.38231 * 120.00155 * 359.81556 * 21 20 19 26 26 C 1.38238 * 119.99919 * 359.97121 * 25 21 20 27 27 H 1.08993 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46901 * 300.00118 * 1 2 3 29 29 H 1.08998 * 109.46825 * 59.99697 * 1 2 3 30 30 H 1.08997 * 109.47251 * 59.99771 * 3 2 1 31 31 H 1.09005 * 109.46923 * 299.99942 * 3 2 1 32 32 H 1.09006 * 109.47477 * 304.99782 * 4 3 2 33 33 H 1.09009 * 109.47079 * 184.99794 * 4 3 2 34 34 H 1.09000 * 109.47068 * 34.99758 * 6 5 4 35 35 H 1.09001 * 109.47179 * 154.99399 * 6 5 4 36 36 H 0.97002 * 119.99947 * 179.97438 * 10 9 7 37 37 H 1.08001 * 119.99420 * 0.02562 * 19 18 15 38 38 H 1.08005 * 120.00085 * 180.27715 * 20 19 18 39 39 H 1.08998 * 115.55130 * 154.39940 * 22 21 20 40 40 H 1.09005 * 117.49626 * 0.02562 * 23 22 21 41 41 H 1.08999 * 117.49902 * 145.01779 * 23 22 21 42 42 H 1.08997 * 117.50114 * 214.98379 * 24 22 21 43 43 H 1.08999 * 117.49735 * 359.97438 * 24 22 21 44 44 H 1.08000 * 120.00105 * 180.02562 * 25 21 20 45 45 H 1.07998 * 120.00137 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0005 -0.8949 -1.3781 7 6 5.2994 -1.4245 -0.8274 8 1 6.0334 -0.7422 -0.4247 9 6 5.5513 -2.7800 -0.8387 10 7 6.6852 -3.2421 -0.3586 11 14 4.2823 -3.9601 -1.5359 12 1 4.5309 -4.1536 -2.9872 13 1 4.3849 -5.2666 -0.8376 14 1 2.9221 -3.3983 -1.3373 15 16 4.4454 1.5130 -2.5263 16 8 4.8427 2.7600 -1.9727 17 8 5.3007 0.7115 -3.3296 18 6 3.0092 1.8337 -3.4952 19 6 2.6682 0.9815 -4.5289 20 6 1.5391 1.2307 -5.2863 21 6 0.7558 2.3372 -5.0159 22 6 -0.4732 2.6109 -5.8440 23 6 -0.9163 1.5281 -6.8301 24 6 -0.2799 2.8207 -7.3472 25 6 1.0996 3.1923 -3.9857 26 6 2.2264 2.9407 -3.2255 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 3.1679 -1.3218 -0.8190 35 1 3.9119 -1.1709 -2.4289 36 1 6.8623 -4.1958 -0.3662 37 1 3.2821 0.1189 -4.7423 38 1 1.2702 0.5624 -6.0910 39 1 -1.2525 3.1919 -5.3509 40 1 -0.3190 0.6176 -6.8795 41 1 -1.9871 1.3970 -6.9859 42 1 -0.9323 3.5394 -7.8431 43 1 0.7362 2.7612 -7.7371 44 1 0.4874 4.0565 -3.7742 45 1 2.4947 3.6086 -2.4203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590746273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:18 Heat of formation + Delta-G solvation = -57.423044 kcal Electronic energy + Delta-G solvation = -28481.215130 eV Core-core repulsion = 24592.275415 eV Total energy + Delta-G solvation = -3888.939716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82435 -37.91175 -36.98960 -36.70577 -35.49683 -35.22103 -32.42004 -31.20970 -30.88002 -29.80981 -27.19107 -25.84807 -24.47719 -23.17352 -22.62919 -22.47316 -21.58918 -20.70235 -18.67570 -17.70787 -17.07652 -16.83215 -16.41792 -16.01171 -15.79593 -15.59009 -15.13393 -14.87784 -14.79601 -14.42427 -14.07074 -13.75583 -13.54880 -13.29457 -13.22309 -12.53344 -12.38438 -12.32778 -12.07733 -11.95461 -11.83432 -11.79036 -11.50429 -11.37761 -11.33620 -11.18738 -11.07910 -10.91000 -10.74529 -10.58532 -10.50316 -10.29844 -10.10531 -9.49089 -9.46760 -9.06856 -8.99712 -8.49860 -8.06618 -5.99877 -3.97752 0.67406 1.01282 1.25820 3.14268 3.34412 3.40504 3.43267 3.58438 3.78501 4.01452 4.17297 4.31716 4.47427 4.47887 4.55150 4.63382 4.78457 4.85120 5.01274 5.18275 5.24008 5.25422 5.30579 5.33479 5.44263 5.44855 5.45806 5.51314 5.54145 5.65019 5.66659 5.70773 5.74055 5.76911 5.89640 6.09743 6.13899 6.21780 6.34198 6.45442 6.78294 6.94294 7.21702 7.35794 7.47274 7.69250 8.57325 9.04602 9.60102 11.13757 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.004239 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.447932 B = 6603.784228 C = 6730.903483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.039 3.961 4 C 0.121 3.879 5 N -0.968 5.968 6 C 0.227 3.773 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.898 5.898 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 S 2.682 3.318 16 O -0.973 6.973 17 O -0.938 6.938 18 C -0.676 4.676 19 C -0.011 4.011 20 C -0.144 4.144 21 C -0.006 4.006 22 C -0.127 4.127 23 C -0.175 4.175 24 C -0.166 4.166 25 C -0.140 4.140 26 C -0.020 4.020 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 12.517 -7.714 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.040 4.040 4 C -0.006 4.006 5 N -0.806 5.806 6 C 0.104 3.896 7 C -0.567 4.567 8 H 0.096 0.904 9 C -0.128 4.128 10 N -0.537 5.537 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 S 2.770 3.230 16 O -0.964 6.964 17 O -0.929 6.929 18 C -0.760 4.760 19 C -0.030 4.030 20 C -0.163 4.163 21 C -0.006 4.006 22 C -0.145 4.145 23 C -0.211 4.211 24 C -0.203 4.203 25 C -0.158 4.158 26 C -0.040 4.040 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.146 0.854 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.426 12.464 -7.865 22.822 hybrid contribution -1.646 -0.553 -0.559 1.825 sum -19.073 11.911 -8.424 24.012 Atomic orbital electron populations 1.22702 0.82364 1.02401 0.99204 1.88091 1.18428 1.27133 1.95147 1.23233 0.95696 0.85315 0.99738 1.21370 0.90625 0.99695 0.88903 1.57101 1.81903 1.17877 1.23689 1.19560 0.99051 0.73991 0.97007 1.21391 1.01656 0.93068 1.40550 0.90423 1.24812 0.95184 0.97997 0.94820 1.69899 1.23541 1.13898 1.46313 0.86983 0.82953 0.80975 0.79747 1.19982 1.21110 1.18460 1.02346 0.74115 0.73029 0.73494 1.93498 1.80737 1.43800 1.78341 1.93610 1.61557 1.68724 1.68967 1.31511 1.24785 1.05058 1.14638 1.20987 0.94546 0.96517 0.90957 1.21146 0.95753 0.98111 1.01289 1.19372 0.93633 0.93691 0.93950 1.21134 0.97528 1.04540 0.91261 1.23110 1.01565 0.93589 1.02883 1.23051 1.02745 1.00079 0.94417 1.20993 0.98084 1.00087 0.96681 1.20871 0.92148 0.93815 0.97122 0.89975 0.94564 0.94696 0.92673 0.93890 0.88006 0.88345 0.92873 0.95783 0.92660 0.84017 0.85246 0.86662 0.88047 0.88237 0.88257 0.88351 0.85420 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.37 -6.01 9.02 -35.23 -0.32 -6.33 16 3 C 0.04 0.55 6.28 37.15 0.23 0.78 16 4 C 0.12 2.03 6.13 -4.05 -0.02 2.00 16 5 N -0.97 -19.65 2.76 -115.67 -0.32 -19.97 16 6 C 0.23 5.41 4.01 -5.20 -0.02 5.39 16 7 C -0.53 -15.08 9.94 -34.44 -0.34 -15.43 16 8 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 9 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 11 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 15 S 2.68 52.96 5.65 -107.50 -0.61 52.35 16 16 O -0.97 -19.49 15.84 -57.17 -0.91 -20.39 16 17 O -0.94 -22.06 16.25 -57.17 -0.93 -22.99 16 18 C -0.68 -10.86 5.97 -39.58 -0.24 -11.09 16 19 C -0.01 -0.17 9.52 -39.58 -0.38 -0.54 16 20 C -0.14 -1.81 9.30 -39.59 -0.37 -2.18 16 21 C -0.01 -0.07 5.61 -104.62 -0.59 -0.66 16 22 C -0.13 -1.08 6.04 -91.77 -0.55 -1.63 16 23 C -0.17 -1.30 9.86 -26.69 -0.26 -1.56 16 24 C -0.17 -1.22 10.17 -26.69 -0.27 -1.49 16 25 C -0.14 -1.59 9.74 -39.58 -0.39 -1.98 16 26 C -0.02 -0.28 8.37 -39.58 -0.33 -0.61 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.56 6.95 -51.93 -0.36 0.20 16 32 H 0.10 1.80 8.11 -51.93 -0.42 1.38 16 33 H 0.10 1.47 6.91 -51.92 -0.36 1.11 16 34 H 0.05 1.26 5.66 -51.93 -0.29 0.96 16 35 H 0.02 0.58 7.04 -51.93 -0.37 0.21 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.14 2.18 7.61 -52.49 -0.40 1.78 16 38 H 0.13 1.33 6.03 -52.48 -0.32 1.01 16 39 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.77 6.18 -51.93 -0.32 0.45 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.14 1.65 7.62 -52.49 -0.40 1.25 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -35.47 380.77 -10.38 -45.85 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.63 Total: 1.49 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -2.51 Total: -25.44 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.45 Total: -47.03 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -2.15 Total: -49.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.61 Total: 52.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.47 -10.38 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.575 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds