Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99935 * 2 1 4 4 C 1.52992 * 109.47056 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47576 * 64.99889 * 4 3 2 6 6 C 1.46499 * 120.00117 * 275.00135 * 5 4 3 7 7 C 1.50697 * 109.47343 * 274.99777 * 6 5 4 8 8 H 1.08007 * 119.99835 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00180 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99823 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00187 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47278 * 89.99887 * 11 9 7 13 13 H 1.48494 * 109.47450 * 210.00327 * 11 9 7 14 14 H 1.48500 * 109.47151 * 330.00213 * 11 9 7 15 15 S 1.65608 * 120.00164 * 94.99746 * 5 4 3 16 16 O 1.42104 * 106.39724 * 23.54333 * 15 5 4 17 17 O 1.42097 * 106.40199 * 156.46245 * 15 5 4 18 18 C 1.76195 * 107.21632 * 270.00503 * 15 5 4 19 19 C 1.38239 * 120.00286 * 269.72172 * 18 15 5 20 20 C 1.38227 * 120.00279 * 179.79052 * 19 18 15 21 21 C 1.38235 * 119.99994 * 0.44199 * 20 19 18 22 22 C 1.50702 * 120.00002 * 179.83539 * 21 20 19 23 23 C 1.53001 * 117.50034 * 8.72304 * 22 21 20 24 24 C 1.53003 * 117.49954 * 300.06504 * 22 21 20 25 25 C 1.38231 * 120.00155 * 359.81556 * 21 20 19 26 26 C 1.38238 * 119.99919 * 359.97121 * 25 21 20 27 27 H 1.08993 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46901 * 300.00118 * 1 2 3 29 29 H 1.08998 * 109.46825 * 59.99697 * 1 2 3 30 30 H 1.08997 * 109.47251 * 59.99771 * 3 2 1 31 31 H 1.09005 * 109.46923 * 299.99942 * 3 2 1 32 32 H 1.09006 * 109.47477 * 304.99782 * 4 3 2 33 33 H 1.09009 * 109.47079 * 184.99794 * 4 3 2 34 34 H 1.09000 * 109.47068 * 34.99758 * 6 5 4 35 35 H 1.09001 * 109.47179 * 154.99399 * 6 5 4 36 36 H 0.97002 * 119.99947 * 179.97438 * 10 9 7 37 37 H 1.08001 * 119.99420 * 0.02562 * 19 18 15 38 38 H 1.08005 * 120.00085 * 180.27715 * 20 19 18 39 39 H 1.08998 * 115.55130 * 154.39940 * 22 21 20 40 40 H 1.09005 * 117.49626 * 0.02562 * 23 22 21 41 41 H 1.08999 * 117.49902 * 145.01779 * 23 22 21 42 42 H 1.08997 * 117.50114 * 214.98379 * 24 22 21 43 43 H 1.08999 * 117.49735 * 359.97438 * 24 22 21 44 44 H 1.08000 * 120.00105 * 180.02562 * 25 21 20 45 45 H 1.07998 * 120.00137 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0005 -0.8949 -1.3781 7 6 5.2994 -1.4245 -0.8274 8 1 6.0334 -0.7422 -0.4247 9 6 5.5513 -2.7800 -0.8387 10 7 6.6852 -3.2421 -0.3586 11 14 4.2823 -3.9601 -1.5359 12 1 4.5309 -4.1536 -2.9872 13 1 4.3849 -5.2666 -0.8376 14 1 2.9221 -3.3983 -1.3373 15 16 4.4454 1.5130 -2.5263 16 8 4.8427 2.7600 -1.9727 17 8 5.3007 0.7115 -3.3296 18 6 3.0092 1.8337 -3.4952 19 6 2.6682 0.9815 -4.5289 20 6 1.5391 1.2307 -5.2863 21 6 0.7558 2.3372 -5.0159 22 6 -0.4732 2.6109 -5.8440 23 6 -0.9163 1.5281 -6.8301 24 6 -0.2799 2.8207 -7.3472 25 6 1.0996 3.1923 -3.9857 26 6 2.2264 2.9407 -3.2255 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 3.1679 -1.3218 -0.8190 35 1 3.9119 -1.1709 -2.4289 36 1 6.8623 -4.1958 -0.3662 37 1 3.2821 0.1189 -4.7423 38 1 1.2702 0.5624 -6.0910 39 1 -1.2525 3.1919 -5.3509 40 1 -0.3190 0.6176 -6.8795 41 1 -1.9871 1.3970 -6.9859 42 1 -0.9323 3.5394 -7.8431 43 1 0.7362 2.7612 -7.7371 44 1 0.4874 4.0565 -3.7742 45 1 2.4947 3.6086 -2.4203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590746273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -81.896792 kcal Electronic energy + Delta-G solvation = -28482.276392 eV Core-core repulsion = 24592.275415 eV Total energy + Delta-G solvation = -3890.000977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.72385 -39.09808 -38.34046 -37.71940 -37.05272 -36.86566 -34.55961 -32.20457 -31.87243 -31.35772 -28.86184 -26.98268 -25.39100 -24.29355 -24.05547 -23.20578 -23.09294 -21.52820 -20.03808 -19.26071 -18.83506 -18.42418 -17.59180 -17.17854 -17.04497 -16.67519 -16.38185 -16.08293 -15.84306 -15.72912 -15.36061 -15.22232 -14.56173 -14.49487 -14.27782 -14.24255 -13.99206 -13.73223 -13.43249 -13.36062 -13.16919 -12.99165 -12.74818 -12.70950 -12.50867 -12.48688 -12.23733 -12.14363 -12.06915 -11.90301 -11.78670 -11.69017 -11.65112 -11.28081 -10.75101 -10.51930 -10.07069 -9.94802 -9.72127 -8.26287 -6.29994 -0.63659 -0.25333 0.26407 1.36720 1.39247 1.50141 1.97371 2.37377 2.40877 2.81159 2.97588 3.06015 3.08949 3.27159 3.49123 3.72573 3.87925 3.91908 3.95934 4.08340 4.16468 4.20971 4.28611 4.41815 4.43276 4.48745 4.58022 4.63039 4.65438 4.73675 4.78393 4.87107 4.88745 4.96408 4.98229 5.04440 5.11621 5.14507 5.19043 5.24384 5.40461 5.45170 5.52532 5.75446 5.81143 6.33390 6.39801 6.71797 7.32091 8.91260 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.004239 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.447932 B = 6603.784228 C = 6730.903483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.045 3.955 4 C 0.110 3.890 5 N -0.977 5.977 6 C 0.242 3.758 7 C -0.537 4.537 8 H 0.031 0.969 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.936 3.064 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.234 1.234 15 S 2.683 3.317 16 O -0.986 6.986 17 O -0.992 6.992 18 C -0.682 4.682 19 C -0.034 4.034 20 C -0.146 4.146 21 C 0.003 3.997 22 C -0.136 4.136 23 C -0.173 4.173 24 C -0.161 4.161 25 C -0.132 4.132 26 C -0.026 4.026 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.267 0.733 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.166 0.834 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.332 13.910 -9.147 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.033 4.033 4 C -0.015 4.015 5 N -0.815 5.815 6 C 0.118 3.882 7 C -0.577 4.577 8 H 0.050 0.950 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.758 3.242 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.157 1.157 15 S 2.778 3.222 16 O -0.977 6.977 17 O -0.982 6.982 18 C -0.772 4.772 19 C -0.053 4.053 20 C -0.164 4.164 21 C 0.003 3.997 22 C -0.154 4.154 23 C -0.210 4.210 24 C -0.198 4.198 25 C -0.150 4.150 26 C -0.045 4.045 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.145 0.855 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.114 0.886 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.183 0.817 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.263 13.876 -9.245 27.814 hybrid contribution -0.165 -0.834 -0.164 0.866 sum -22.427 13.042 -9.409 27.597 Atomic orbital electron populations 1.22876 0.80240 1.03190 1.00739 1.88015 1.20845 1.28299 1.95497 1.23183 0.93032 0.85187 1.01946 1.21612 0.93463 0.99615 0.86819 1.56987 1.82543 1.16403 1.25541 1.19177 0.96376 0.76205 0.96474 1.21719 1.02847 0.92867 1.40220 0.95025 1.25820 0.97584 1.00150 0.95181 1.70065 1.26063 1.14554 1.48203 0.85889 0.81020 0.78327 0.78986 1.19300 1.20262 1.15685 1.01759 0.74908 0.72309 0.73209 1.93462 1.81849 1.43596 1.78745 1.93537 1.64678 1.69973 1.70016 1.30687 1.23961 1.07392 1.15163 1.21019 0.95884 0.96513 0.91898 1.21375 0.94741 0.99064 1.01232 1.19781 0.93959 0.92427 0.93561 1.21245 0.96741 1.05856 0.91533 1.23215 1.02579 0.93257 1.01939 1.23129 1.02760 1.00553 0.93357 1.21396 0.97180 1.00870 0.95600 1.21127 0.92478 0.92939 0.97955 0.89696 0.92461 0.93618 0.89342 0.92493 0.89943 0.86952 0.92016 0.95741 0.92432 0.85510 0.83279 0.84541 0.88572 0.86535 0.86362 0.89262 0.81691 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.41 -12.51 9.02 -148.98 -1.34 -13.86 16 3 C 0.04 1.17 6.28 71.98 0.45 1.62 16 4 C 0.11 3.76 6.13 86.38 0.53 4.29 16 5 N -0.98 -40.96 2.76 -519.85 -1.43 -42.40 16 6 C 0.24 11.87 4.01 85.63 0.34 12.21 16 7 C -0.54 -32.39 9.94 25.60 0.25 -32.13 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 9 C 0.01 0.62 5.47 84.65 0.46 1.08 16 10 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 11 Si 0.94 44.79 27.47 68.60 1.88 46.67 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.23 -10.13 6.54 99.48 0.65 -9.48 16 15 S 2.68 110.00 5.65 -56.49 -0.32 109.68 16 16 O -0.99 -40.57 15.84 -128.00 -2.03 -42.59 16 17 O -0.99 -49.65 16.25 -128.00 -2.08 -51.73 16 18 C -0.68 -21.59 5.97 22.27 0.13 -21.46 16 19 C -0.03 -1.01 9.52 22.27 0.21 -0.80 16 20 C -0.15 -3.32 9.30 22.27 0.21 -3.12 16 21 C 0.00 0.06 5.61 -19.87 -0.11 -0.05 16 22 C -0.14 -1.68 6.04 -11.54 -0.07 -1.75 16 23 C -0.17 -1.86 9.86 30.62 0.30 -1.56 16 24 C -0.16 -1.72 10.17 30.62 0.31 -1.41 16 25 C -0.13 -2.47 9.74 22.27 0.22 -2.25 16 26 C -0.03 -0.63 8.37 22.27 0.19 -0.44 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.33 6.95 -2.38 -0.02 1.32 16 32 H 0.08 3.07 8.11 -2.38 -0.02 3.05 16 33 H 0.11 3.40 6.91 -2.38 -0.02 3.39 16 34 H 0.06 2.92 5.66 -2.39 -0.01 2.91 16 35 H 0.02 1.20 7.04 -2.39 -0.02 1.18 16 36 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 37 H 0.13 4.09 7.61 -2.91 -0.02 4.07 16 38 H 0.15 2.71 6.03 -2.91 -0.02 2.69 16 39 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.14 6.18 -2.38 -0.01 1.13 16 41 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 45 H 0.15 3.22 7.62 -2.91 -0.02 3.20 16 Total: -1.00 -82.04 380.77 0.59 -81.45 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.93 Total: 17.93 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 4.68 Total: -43.97 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -1.13 Total: -103.58 kcal Atomic # 8 Polarization: -102.73 SS G_CDS: -5.45 Total: -108.18 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Atomic # 16 Polarization: 110.00 SS G_CDS: -0.32 Total: 109.68 kcal Total: -82.04 0.59 -81.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.448 kcal (2) G-P(sol) polarization free energy of solvation -82.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds