Wall clock time and date at job start Sat Apr 11 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99956 * 2 1 4 4 C 1.53000 * 109.47101 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46816 * 65.00192 * 4 3 2 6 6 C 1.46507 * 120.00478 * 80.99606 * 5 4 3 7 7 C 1.50702 * 109.46552 * 85.32199 * 6 5 4 8 8 H 1.07995 * 120.00449 * 3.92819 * 7 6 5 9 9 C 1.37883 * 119.99330 * 183.64862 * 7 6 5 10 10 N 1.31522 * 119.99865 * 174.77659 * 9 7 6 11 11 Si 1.86803 * 120.00291 * 354.76716 * 9 7 6 12 12 H 1.48502 * 109.46612 * 93.93306 * 11 9 7 13 13 H 1.48491 * 109.47323 * 213.93113 * 11 9 7 14 14 H 1.48500 * 109.46793 * 333.93615 * 11 9 7 15 15 S 1.65602 * 120.00051 * 260.99453 * 5 4 3 16 16 O 1.42104 * 104.27297 * 26.07469 * 15 5 4 17 17 O 1.42101 * 104.28012 * 153.92743 * 15 5 4 18 18 C 1.81399 * 104.45130 * 270.00390 * 15 5 4 19 19 H 1.08998 * 115.55272 * 39.27189 * 18 15 5 20 20 C 1.52997 * 117.49501 * 253.60748 * 18 15 5 21 21 C 1.53000 * 117.49599 * 184.98647 * 18 15 5 22 22 H 1.08992 * 117.50221 * 359.97438 * 21 18 15 23 23 C 1.50710 * 117.49584 * 214.97508 * 21 18 15 24 24 C 1.38233 * 119.99697 * 299.73051 * 23 21 18 25 25 C 1.38235 * 119.99361 * 179.80766 * 24 23 21 26 26 C 1.38236 * 120.00207 * 0.42169 * 25 24 23 27 27 C 1.38233 * 120.00018 * 359.80583 * 26 25 24 28 28 C 1.38230 * 119.99500 * 119.99913 * 23 21 18 29 29 H 1.09001 * 109.46760 * 299.99894 * 1 2 3 30 30 H 1.08995 * 109.47273 * 59.99746 * 1 2 3 31 31 H 1.08992 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47362 * 60.00094 * 3 2 1 33 33 H 1.09002 * 109.47144 * 300.00130 * 3 2 1 34 34 H 1.08997 * 109.47473 * 305.00046 * 4 3 2 35 35 H 1.09003 * 109.47233 * 184.99869 * 4 3 2 36 36 H 1.09000 * 109.46622 * 325.32628 * 6 5 4 37 37 H 1.08994 * 109.47489 * 205.32450 * 6 5 4 38 38 H 0.96995 * 119.99934 * 179.97438 * 10 9 7 39 39 H 1.08996 * 117.50182 * 359.97438 * 20 18 15 40 40 H 1.09001 * 117.49933 * 145.02181 * 20 18 15 41 41 H 1.07998 * 120.00239 * 359.97438 * 24 23 21 42 42 H 1.08005 * 119.99830 * 180.20551 * 25 24 23 43 43 H 1.07996 * 119.99936 * 179.79031 * 26 25 24 44 44 H 1.08001 * 120.00036 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00649 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0963 1.3734 -2.4682 7 6 5.4492 2.0368 -2.4977 8 1 6.1725 1.8227 -1.7249 9 6 5.7654 2.9127 -3.5146 10 7 6.9044 3.5697 -3.4861 11 14 4.5763 3.1659 -4.9328 12 1 3.7053 4.3340 -4.6458 13 1 5.3407 3.4134 -6.1815 14 1 3.7374 1.9518 -5.0982 15 16 4.3368 -1.0512 -1.2944 16 8 3.5644 -1.6101 -0.2406 17 8 4.1112 -1.4261 -2.6464 18 6 6.1052 -1.1301 -0.8984 19 1 6.4458 -0.4384 -0.1279 20 6 7.0717 -1.4454 -2.0418 21 6 6.7848 -2.4990 -0.9700 22 1 6.1692 -3.3522 -1.2547 23 6 7.8740 -2.7883 0.0306 24 6 9.0063 -1.9962 0.0679 25 6 10.0036 -2.2592 0.9884 26 6 9.8725 -3.3196 1.8655 27 6 8.7423 -4.1145 1.8249 28 6 7.7432 -3.8491 0.9071 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8463 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8409 35 1 3.9786 2.1765 0.0889 36 1 3.3175 2.1360 -2.4759 37 1 3.9865 0.7331 -3.3434 38 1 7.1270 4.1856 -4.2016 39 1 6.6449 -1.6059 -3.0318 40 1 8.0483 -0.9616 -2.0232 41 1 9.1106 -1.1703 -0.6201 42 1 10.8868 -1.6384 1.0199 43 1 10.6532 -3.5271 2.5823 44 1 8.6401 -4.9432 2.5100 45 1 6.8604 -4.4704 0.8752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591324600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:31 Heat of formation + Delta-G solvation = -54.441944 kcal Electronic energy + Delta-G solvation = -28103.099691 eV Core-core repulsion = 24214.289246 eV Total energy + Delta-G solvation = -3888.810446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60140 -37.76633 -36.82546 -36.33195 -35.54096 -35.19685 -32.53281 -30.98996 -30.53212 -29.71869 -27.18049 -25.83220 -23.99879 -23.25309 -22.73008 -22.26731 -21.32892 -20.32708 -18.11156 -17.47732 -17.03229 -16.82711 -16.36288 -16.22115 -15.49791 -15.24517 -15.12536 -14.84105 -14.54182 -14.30427 -14.14609 -13.65637 -13.42884 -13.07120 -12.89988 -12.62484 -12.50414 -12.23037 -11.96912 -11.89870 -11.61866 -11.45621 -11.40436 -11.28608 -11.16849 -11.09396 -11.01636 -10.84840 -10.61390 -10.54564 -10.36680 -10.19704 -10.02646 -9.60819 -9.31337 -8.94631 -8.66448 -8.61177 -8.01850 -6.17717 -4.17048 0.94223 1.28057 1.37790 3.19685 3.23531 3.33587 3.39798 3.55429 3.95622 4.14445 4.34726 4.41544 4.61878 4.76674 4.81121 4.86300 4.97644 5.10007 5.14460 5.18499 5.27443 5.37542 5.43732 5.45425 5.49768 5.57319 5.60694 5.66230 5.80614 5.84798 5.87401 5.92496 6.03249 6.11917 6.18000 6.24960 6.40836 6.43939 6.48803 6.62118 6.87336 6.96456 7.14711 7.36777 7.52763 7.56968 8.39582 8.85719 9.44171 10.94721 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.004583 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.473422 B = 6108.056527 C = 8105.316754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.040 3.960 4 C 0.134 3.866 5 N -0.972 5.972 6 C 0.214 3.786 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.078 3.922 10 N -0.894 5.894 11 Si 0.864 3.136 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.259 1.259 15 S 2.639 3.361 16 O -0.947 6.947 17 O -0.959 6.959 18 C -0.659 4.659 19 H 0.155 0.845 20 C -0.099 4.099 21 C -0.083 4.083 22 H 0.118 0.882 23 C -0.047 4.047 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.113 4.113 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.265 0.735 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -10.114 9.231 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C -0.039 4.039 4 C 0.007 3.993 5 N -0.809 5.809 6 C 0.090 3.910 7 C -0.580 4.580 8 H 0.098 0.902 9 C -0.126 4.126 10 N -0.532 5.532 11 Si 0.690 3.310 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.183 1.183 15 S 2.729 3.271 16 O -0.937 6.937 17 O -0.950 6.950 18 C -0.765 4.765 19 H 0.173 0.827 20 C -0.137 4.137 21 C -0.103 4.103 22 H 0.136 0.864 23 C -0.048 4.048 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.131 4.131 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.037 -10.820 8.934 14.070 hybrid contribution -0.069 1.194 -0.489 1.292 sum -1.107 -9.626 8.445 12.853 Atomic orbital electron populations 1.22694 0.82480 1.02252 0.99249 1.88146 1.18314 1.27018 1.95187 1.23082 0.95370 0.85312 1.00102 1.21141 0.91518 1.00615 0.85993 1.57084 1.79860 1.27621 1.16307 1.19591 0.97732 0.91550 0.82095 1.21463 0.98955 1.25917 1.11634 0.90173 1.24824 0.95138 0.94865 0.97742 1.69901 1.23084 1.26917 1.33277 0.86994 0.81811 0.79419 0.82761 1.20161 1.20874 1.18277 1.04024 0.75493 0.73457 0.74115 1.93591 1.64967 1.76937 1.58198 1.93530 1.83998 1.82009 1.35444 1.32964 1.24731 1.05885 1.12879 0.82719 1.22878 0.99760 0.97962 0.93095 1.20846 0.98869 0.90728 0.99865 0.86369 1.19080 0.94127 0.95676 0.95879 1.21202 0.93388 0.99610 0.98940 1.21153 0.99010 0.97718 0.95710 1.21146 0.98046 0.95895 0.99366 1.21105 0.94136 0.99814 0.98817 1.21028 0.99150 0.97499 0.95424 0.94669 0.94592 0.90074 0.92988 0.92850 0.90321 0.88474 0.95148 0.93233 0.92546 0.86148 0.86851 0.85311 0.85963 0.86251 0.86055 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.50 9.03 -52.83 -0.48 -6.98 16 3 C 0.04 0.63 6.25 37.16 0.23 0.86 16 4 C 0.13 2.28 5.79 -4.04 -0.02 2.26 16 5 N -0.97 -19.52 2.65 -115.66 -0.31 -19.83 16 6 C 0.21 4.90 4.46 -5.19 -0.02 4.88 16 7 C -0.54 -13.92 9.93 -34.44 -0.34 -14.26 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.08 2.09 5.47 -17.81 -0.10 1.99 16 10 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 11 Si 0.86 20.40 27.50 -169.99 -4.67 15.73 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.26 -6.00 6.51 56.52 0.37 -5.64 16 15 S 2.64 51.58 5.74 -107.50 -0.62 50.96 16 16 O -0.95 -19.43 15.31 -64.93 -0.99 -20.42 16 17 O -0.96 -21.24 15.84 -57.54 -0.91 -22.16 16 18 C -0.66 -11.07 6.23 -26.73 -0.17 -11.23 16 19 H 0.15 2.52 8.14 -51.93 -0.42 2.10 16 20 C -0.10 -1.59 9.49 -26.73 -0.25 -1.84 16 21 C -0.08 -1.22 5.81 -91.77 -0.53 -1.76 16 22 H 0.12 1.56 8.14 -51.93 -0.42 1.13 16 23 C -0.05 -0.65 5.61 -104.62 -0.59 -1.24 16 24 C -0.11 -1.50 9.30 -39.58 -0.37 -1.87 16 25 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 26 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 28 C -0.11 -1.39 9.74 -39.58 -0.39 -1.77 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 34 H 0.08 1.24 7.46 -51.93 -0.39 0.85 16 35 H 0.10 1.57 8.13 -51.93 -0.42 1.15 16 36 H 0.03 0.68 7.10 -51.93 -0.37 0.31 16 37 H 0.05 1.21 5.90 -51.93 -0.31 0.90 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.12 1.96 7.68 -51.93 -0.40 1.56 16 40 H 0.11 1.70 6.17 -51.93 -0.32 1.38 16 41 H 0.13 1.69 6.02 -52.49 -0.32 1.37 16 42 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -33.10 383.63 -10.79 -43.90 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.74 Total: 5.47 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -2.63 Total: -27.65 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.47 Total: -44.63 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -2.38 Total: -49.56 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: 51.58 SS G_CDS: -0.62 Total: 50.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.10 -10.79 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591324600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.542 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds