Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99956 * 2 1 4 4 C 1.53000 * 109.47101 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46816 * 65.00192 * 4 3 2 6 6 C 1.46507 * 120.00478 * 80.99606 * 5 4 3 7 7 C 1.50702 * 109.46552 * 85.32199 * 6 5 4 8 8 H 1.07995 * 120.00449 * 3.92819 * 7 6 5 9 9 C 1.37883 * 119.99330 * 183.64862 * 7 6 5 10 10 N 1.31522 * 119.99865 * 174.77659 * 9 7 6 11 11 Si 1.86803 * 120.00291 * 354.76716 * 9 7 6 12 12 H 1.48502 * 109.46612 * 93.93306 * 11 9 7 13 13 H 1.48491 * 109.47323 * 213.93113 * 11 9 7 14 14 H 1.48500 * 109.46793 * 333.93615 * 11 9 7 15 15 S 1.65602 * 120.00051 * 260.99453 * 5 4 3 16 16 O 1.42104 * 104.27297 * 26.07469 * 15 5 4 17 17 O 1.42101 * 104.28012 * 153.92743 * 15 5 4 18 18 C 1.81399 * 104.45130 * 270.00390 * 15 5 4 19 19 H 1.08998 * 115.55272 * 39.27189 * 18 15 5 20 20 C 1.52997 * 117.49501 * 253.60748 * 18 15 5 21 21 C 1.53000 * 117.49599 * 184.98647 * 18 15 5 22 22 H 1.08992 * 117.50221 * 359.97438 * 21 18 15 23 23 C 1.50710 * 117.49584 * 214.97508 * 21 18 15 24 24 C 1.38233 * 119.99697 * 299.73051 * 23 21 18 25 25 C 1.38235 * 119.99361 * 179.80766 * 24 23 21 26 26 C 1.38236 * 120.00207 * 0.42169 * 25 24 23 27 27 C 1.38233 * 120.00018 * 359.80583 * 26 25 24 28 28 C 1.38230 * 119.99500 * 119.99913 * 23 21 18 29 29 H 1.09001 * 109.46760 * 299.99894 * 1 2 3 30 30 H 1.08995 * 109.47273 * 59.99746 * 1 2 3 31 31 H 1.08992 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47362 * 60.00094 * 3 2 1 33 33 H 1.09002 * 109.47144 * 300.00130 * 3 2 1 34 34 H 1.08997 * 109.47473 * 305.00046 * 4 3 2 35 35 H 1.09003 * 109.47233 * 184.99869 * 4 3 2 36 36 H 1.09000 * 109.46622 * 325.32628 * 6 5 4 37 37 H 1.08994 * 109.47489 * 205.32450 * 6 5 4 38 38 H 0.96995 * 119.99934 * 179.97438 * 10 9 7 39 39 H 1.08996 * 117.50182 * 359.97438 * 20 18 15 40 40 H 1.09001 * 117.49933 * 145.02181 * 20 18 15 41 41 H 1.07998 * 120.00239 * 359.97438 * 24 23 21 42 42 H 1.08005 * 119.99830 * 180.20551 * 25 24 23 43 43 H 1.07996 * 119.99936 * 179.79031 * 26 25 24 44 44 H 1.08001 * 120.00036 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00649 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0963 1.3734 -2.4682 7 6 5.4492 2.0368 -2.4977 8 1 6.1725 1.8227 -1.7249 9 6 5.7654 2.9127 -3.5146 10 7 6.9044 3.5697 -3.4861 11 14 4.5763 3.1659 -4.9328 12 1 3.7053 4.3340 -4.6458 13 1 5.3407 3.4134 -6.1815 14 1 3.7374 1.9518 -5.0982 15 16 4.3368 -1.0512 -1.2944 16 8 3.5644 -1.6101 -0.2406 17 8 4.1112 -1.4261 -2.6464 18 6 6.1052 -1.1301 -0.8984 19 1 6.4458 -0.4384 -0.1279 20 6 7.0717 -1.4454 -2.0418 21 6 6.7848 -2.4990 -0.9700 22 1 6.1692 -3.3522 -1.2547 23 6 7.8740 -2.7883 0.0306 24 6 9.0063 -1.9962 0.0679 25 6 10.0036 -2.2592 0.9884 26 6 9.8725 -3.3196 1.8655 27 6 8.7423 -4.1145 1.8249 28 6 7.7432 -3.8491 0.9071 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8463 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8409 35 1 3.9786 2.1765 0.0889 36 1 3.3175 2.1360 -2.4759 37 1 3.9865 0.7331 -3.3434 38 1 7.1270 4.1856 -4.2016 39 1 6.6449 -1.6059 -3.0318 40 1 8.0483 -0.9616 -2.0232 41 1 9.1106 -1.1703 -0.6201 42 1 10.8868 -1.6384 1.0199 43 1 10.6532 -3.5271 2.5823 44 1 8.6401 -4.9432 2.5100 45 1 6.8604 -4.4704 0.8752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591324600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -74.650049 kcal Electronic energy + Delta-G solvation = -28103.975980 eV Core-core repulsion = 24214.289246 eV Total energy + Delta-G solvation = -3889.686735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59739 -39.04608 -38.19045 -37.73905 -37.09118 -36.82435 -34.51896 -31.89124 -31.49002 -31.26265 -28.84375 -26.99842 -25.10149 -24.64697 -24.24031 -23.27479 -22.87109 -21.38466 -19.65664 -18.98556 -18.83518 -18.07517 -17.75550 -17.55188 -16.91720 -16.48352 -16.23864 -16.14937 -15.82149 -15.67564 -15.42980 -15.11727 -14.51300 -14.38734 -14.16296 -14.09648 -13.86319 -13.69923 -13.48182 -13.19775 -13.12501 -12.93712 -12.91096 -12.77207 -12.53362 -12.45776 -12.30071 -12.17591 -11.93887 -11.90864 -11.82566 -11.69855 -11.61902 -11.42820 -10.72110 -10.49314 -9.84674 -9.76454 -9.50359 -8.26036 -6.28245 -0.57126 0.31691 0.47810 1.35666 1.41430 1.52232 1.75852 2.27922 2.37345 2.86222 2.93513 3.06983 3.09570 3.32996 3.49415 3.63359 3.78388 3.85832 4.03462 4.13578 4.15501 4.22040 4.27999 4.28463 4.52641 4.55883 4.57659 4.61312 4.63491 4.67097 4.82639 4.85529 4.88613 4.89334 4.93498 5.04307 5.08428 5.15110 5.39337 5.50989 5.55440 5.60424 5.66294 5.80658 6.08745 6.33571 6.40270 6.76217 7.35761 8.89020 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.004583 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.473422 B = 6108.056527 C = 8105.316754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.039 3.961 4 C 0.124 3.876 5 N -0.979 5.979 6 C 0.223 3.777 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.027 3.973 10 N -0.935 5.935 11 Si 0.917 3.083 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.254 1.254 15 S 2.643 3.357 16 O -0.958 6.958 17 O -0.991 6.991 18 C -0.662 4.662 19 H 0.157 0.843 20 C -0.111 4.111 21 C -0.062 4.062 22 H 0.132 0.868 23 C -0.070 4.070 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.123 4.123 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.266 0.734 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -10.976 10.672 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.322 6.322 3 C -0.039 4.039 4 C -0.002 4.002 5 N -0.815 5.815 6 C 0.098 3.902 7 C -0.571 4.571 8 H 0.076 0.924 9 C -0.172 4.172 10 N -0.575 5.575 11 Si 0.741 3.259 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.178 1.178 15 S 2.737 3.263 16 O -0.948 6.948 17 O -0.982 6.982 18 C -0.771 4.771 19 H 0.175 0.825 20 C -0.148 4.148 21 C -0.082 4.082 22 H 0.150 0.850 23 C -0.071 4.071 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.141 4.141 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.168 0.832 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.431 -11.681 10.388 15.697 hybrid contribution 0.129 1.383 -0.805 1.606 sum -1.302 -10.297 9.583 14.127 Atomic orbital electron populations 1.22902 0.80538 1.03220 1.00704 1.88087 1.20620 1.28021 1.95480 1.23116 0.94157 0.85127 1.01495 1.21414 0.92951 1.00899 0.84939 1.57027 1.80578 1.27420 1.16507 1.19310 0.96326 0.91552 0.83013 1.21635 0.99700 1.25189 1.10574 0.92448 1.25529 0.96585 0.94944 1.00137 1.70014 1.24995 1.28181 1.34355 0.86139 0.80095 0.79840 0.79819 1.18706 1.20837 1.17797 1.03685 0.76284 0.73085 0.73233 1.93567 1.66196 1.77026 1.58041 1.93482 1.85085 1.82527 1.37098 1.32673 1.22377 1.08379 1.13625 0.82465 1.22943 0.99664 0.99324 0.92911 1.21015 0.98477 0.89884 0.98851 0.85004 1.19105 0.94126 0.97096 0.96760 1.21278 0.94191 0.99720 0.99740 1.21429 0.99114 0.98438 0.95427 1.21547 0.98604 0.94839 0.99041 1.21486 0.93473 1.00380 0.98496 1.21291 1.00246 0.97136 0.95389 0.92280 0.94011 0.89483 0.89674 0.93255 0.89266 0.87955 0.94010 0.94620 0.92487 0.86868 0.86365 0.86241 0.84319 0.83306 0.83161 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.81 16 2 O -0.40 -13.75 9.03 -132.15 -1.19 -14.95 16 3 C 0.04 1.18 6.25 71.98 0.45 1.63 16 4 C 0.12 4.14 5.79 86.38 0.50 4.64 16 5 N -0.98 -39.47 2.65 -519.84 -1.38 -40.85 16 6 C 0.22 10.24 4.46 85.63 0.38 10.62 16 7 C -0.53 -27.79 9.93 25.60 0.25 -27.54 16 8 H 0.06 3.20 8.06 -2.91 -0.02 3.18 16 9 C 0.03 1.49 5.47 84.66 0.46 1.95 16 10 N -0.94 -54.45 13.96 21.45 0.30 -54.15 16 11 Si 0.92 41.92 27.50 68.60 1.89 43.81 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.25 -11.34 6.51 99.48 0.65 -10.70 16 15 S 2.64 104.53 5.74 -56.49 -0.32 104.21 16 16 O -0.96 -39.26 15.31 -120.58 -1.85 -41.11 16 17 O -0.99 -44.81 15.84 -127.65 -2.02 -46.83 16 18 C -0.66 -22.62 6.23 30.59 0.19 -22.43 16 19 H 0.16 5.26 8.14 -2.39 -0.02 5.24 16 20 C -0.11 -3.65 9.49 30.59 0.29 -3.36 16 21 C -0.06 -1.83 5.81 -11.54 -0.07 -1.90 16 22 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 23 C -0.07 -1.89 5.61 -19.86 -0.11 -2.00 16 24 C -0.13 -3.44 9.30 22.27 0.21 -3.23 16 25 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 26 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 27 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 28 C -0.12 -2.78 9.74 22.27 0.22 -2.57 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.50 7.73 -2.39 -0.02 1.48 16 34 H 0.09 2.76 7.46 -2.39 -0.02 2.74 16 35 H 0.10 3.26 8.13 -2.39 -0.02 3.24 16 36 H 0.04 1.82 7.10 -2.39 -0.02 1.81 16 37 H 0.04 1.75 5.90 -2.39 -0.01 1.74 16 38 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.11 3.86 7.68 -2.39 -0.02 3.84 16 40 H 0.12 3.72 6.17 -2.39 -0.01 3.70 16 41 H 0.12 3.23 6.02 -2.91 -0.02 3.22 16 42 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -71.11 383.63 1.04 -70.07 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.92 Total: 28.69 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 4.70 Total: -48.89 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -1.08 Total: -95.00 kcal Atomic # 8 Polarization: -97.83 SS G_CDS: -5.06 Total: -102.89 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.89 Total: 43.81 kcal Atomic # 16 Polarization: 104.53 SS G_CDS: -0.32 Total: 104.21 kcal Total: -71.11 1.04 -70.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591324600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.577 kcal (2) G-P(sol) polarization free energy of solvation -71.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds