Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00078 * 2 1 4 4 H 1.08995 * 109.47052 * 30.00341 * 3 2 1 5 5 C 1.52997 * 109.47340 * 270.00236 * 3 2 1 6 6 C 1.52998 * 109.47304 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47386 * 59.99993 * 6 5 3 8 8 C 1.53010 * 109.47067 * 300.00357 * 7 6 5 9 9 C 1.52997 * 109.46896 * 59.99941 * 8 7 6 10 10 H 1.08995 * 109.47378 * 60.00172 * 9 8 7 11 11 N 1.46497 * 109.47028 * 180.02562 * 9 8 7 12 12 S 1.65601 * 119.99874 * 264.99766 * 11 9 8 13 13 O 1.42096 * 106.40229 * 311.45774 * 12 11 9 14 14 O 1.42099 * 106.40437 * 178.53487 * 12 11 9 15 15 C 1.76203 * 107.21820 * 64.99871 * 12 11 9 16 16 C 1.38656 * 119.87857 * 90.00030 * 15 12 11 17 17 C 1.38607 * 120.50616 * 179.97438 * 16 15 12 18 18 C 1.37645 * 120.24367 * 359.97438 * 17 16 15 19 19 C 1.40691 * 119.74686 * 0.02562 * 18 17 16 20 20 C 1.41393 * 120.24604 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00415 * 155.23777 * 20 19 18 22 22 C 1.39950 * 119.99775 * 335.23655 * 20 19 18 23 23 N 1.30821 * 120.00442 * 342.28968 * 22 20 19 24 24 Si 1.86801 * 119.99951 * 162.28844 * 22 20 19 25 25 H 1.48504 * 109.47119 * 59.99550 * 24 22 20 26 26 H 1.48495 * 109.47299 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46993 * 299.99993 * 24 22 20 28 28 C 1.37596 * 119.87369 * 269.72491 * 15 12 11 29 29 H 1.09004 * 109.47034 * 299.99624 * 1 2 3 30 30 H 1.09002 * 109.47489 * 59.99617 * 1 2 3 31 31 H 1.08999 * 109.47631 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47100 * 300.00223 * 5 3 2 33 33 H 1.09002 * 109.46888 * 60.00176 * 5 3 2 34 34 H 1.09003 * 109.47467 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.47043 * 300.00036 * 6 5 3 36 36 H 1.09005 * 109.46994 * 60.00013 * 7 6 5 37 37 H 1.08999 * 109.47726 * 180.02562 * 7 6 5 38 38 H 1.08995 * 109.46966 * 299.99861 * 8 7 6 39 39 H 1.09002 * 109.47050 * 179.97438 * 8 7 6 40 40 H 0.97004 * 120.00656 * 84.99344 * 11 9 8 41 41 H 1.08005 * 119.74593 * 359.95986 * 16 15 12 42 42 H 1.07997 * 119.87913 * 180.02562 * 17 16 15 43 43 H 1.08005 * 120.12424 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00287 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.13132 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4424 6 6 2.8405 3.1689 -1.4424 7 6 4.1893 3.1261 -0.7215 8 6 3.9819 2.6601 0.7211 9 6 3.3591 1.2626 0.7210 10 1 4.0239 0.5685 0.2070 11 7 3.1600 0.8166 2.1022 12 16 4.3044 -0.1247 2.8414 13 8 4.6115 -1.1719 1.9313 14 8 3.8403 -0.3560 4.1644 15 6 5.7648 0.8498 2.9898 16 6 5.9663 1.6243 4.1222 17 6 7.1107 2.3954 4.2527 18 6 8.0612 2.3996 3.2572 19 6 7.8674 1.6176 2.1037 20 6 8.8372 1.6136 1.0748 21 1 8.9149 0.7667 0.4092 22 6 9.6964 2.7072 0.9188 23 7 9.3995 3.8562 1.4693 24 14 11.2675 2.5263 -0.0754 25 1 10.9300 2.1338 -1.4673 26 1 11.9968 3.8197 -0.0883 27 1 12.1248 1.4813 0.5395 28 6 6.7038 0.8350 1.9841 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8829 1.0775 -1.9564 33 1 1.2568 1.8016 -1.9562 34 1 2.9879 3.5011 -2.4701 35 1 2.1756 3.8630 -0.9284 36 1 4.8542 2.4319 -1.2355 37 1 4.6329 4.1217 -0.7210 38 1 3.3170 3.3541 1.2351 39 1 4.9429 2.6291 1.2346 40 1 2.3578 1.0727 2.5838 41 1 5.2258 1.6269 4.9083 42 1 7.2575 2.9945 5.1392 43 1 8.9523 3.0009 3.3611 44 1 9.9952 4.6141 1.3615 45 1 6.5468 0.2280 1.1048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593640375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = -122.239759 kcal Electronic energy + Delta-G solvation = -28742.388142 eV Core-core repulsion = 24850.637762 eV Total energy + Delta-G solvation = -3891.750379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.47231 -37.65531 -36.63780 -36.40521 -35.21344 -34.04168 -33.83828 -30.15512 -30.04202 -29.71490 -28.59012 -26.38395 -25.47688 -22.44997 -22.14832 -21.81422 -20.98397 -20.11032 -18.94393 -17.89584 -17.21469 -16.55443 -16.26882 -15.86017 -15.29771 -15.22532 -14.92249 -14.68317 -14.44948 -13.90445 -13.71266 -13.47578 -13.39524 -13.32227 -12.84152 -12.65669 -12.56021 -11.97558 -11.78998 -11.63302 -11.52268 -11.45958 -11.35659 -11.32895 -11.19231 -11.07490 -10.98863 -10.87518 -10.77443 -10.63153 -10.60973 -10.24414 -9.77639 -9.63758 -9.51730 -9.34394 -9.03089 -8.01429 -7.69842 -6.93079 -4.53533 1.10039 2.20993 2.64184 2.99210 3.01476 3.08601 3.59345 3.68299 3.82552 4.30617 4.46406 4.63928 4.79164 4.95230 5.08093 5.12091 5.19732 5.25627 5.29419 5.30548 5.39038 5.44232 5.51407 5.58001 5.67789 5.83248 5.91598 6.02681 6.06528 6.09749 6.19770 6.28748 6.30159 6.55258 6.57173 6.66444 6.76095 6.86184 7.03578 7.17488 7.20896 7.31204 7.39711 7.73372 7.81027 7.94344 8.40333 8.67077 8.72024 10.02236 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.004454 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.359817 B = 6285.385185 C = 7655.828104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.088 3.912 4 H 0.064 0.936 5 C -0.140 4.140 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.141 4.141 9 C 0.160 3.840 10 H 0.100 0.900 11 N -1.111 6.111 12 S 2.688 3.312 13 O -0.968 6.968 14 O -0.979 6.979 15 C -0.631 4.631 16 C -0.145 4.145 17 C -0.121 4.121 18 C -0.118 4.118 19 C 0.094 3.906 20 C -0.460 4.460 21 H 0.082 0.918 22 C 0.077 3.923 23 N -0.794 5.794 24 Si 0.909 3.091 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.125 4.125 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.410 0.590 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.283 0.717 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 1.903 -4.592 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.029 3.971 4 H 0.082 0.918 5 C -0.178 4.178 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.180 4.180 9 C 0.053 3.947 10 H 0.118 0.882 11 N -0.866 5.866 12 S 2.784 3.216 13 O -0.958 6.958 14 O -0.970 6.970 15 C -0.723 4.723 16 C -0.166 4.166 17 C -0.141 4.141 18 C -0.138 4.138 19 C 0.091 3.909 20 C -0.490 4.490 21 H 0.100 0.900 22 C -0.141 4.141 23 N -0.419 5.419 24 Si 0.733 3.267 25 H -0.188 1.188 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.147 4.147 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.243 0.757 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.094 0.906 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.191 1.026 -4.406 13.003 hybrid contribution 0.589 1.136 -0.274 1.308 sum -11.601 2.162 -4.679 12.695 Atomic orbital electron populations 1.22782 0.81702 1.02617 0.99610 1.88020 1.18992 1.27339 1.94936 1.22415 0.94436 0.84713 0.95546 0.91759 1.22038 1.01549 0.97739 0.96488 1.21544 0.97192 0.95969 1.00808 1.21516 0.96710 1.02301 0.95202 1.22148 1.03069 0.95045 0.97712 1.20869 0.96025 0.96933 0.80908 0.88177 1.55492 1.36057 1.72619 1.22470 1.01674 0.73641 0.73774 0.72497 1.93533 1.84657 1.52650 1.65001 1.93510 1.81268 1.84821 1.37377 1.29781 1.19466 1.18937 1.04076 1.20063 0.99686 1.00349 0.96537 1.20802 0.95327 0.99445 0.98479 1.21628 0.98780 1.00969 0.92377 1.17645 0.90751 0.90361 0.92189 1.19577 1.13334 1.02849 1.13211 0.89987 1.25898 0.98821 0.94245 0.95119 1.69766 1.35150 1.00778 1.36226 0.86341 0.81128 0.78581 0.80630 1.18811 1.20289 1.18714 1.20761 0.94143 1.02930 0.96836 0.94206 0.94329 0.89765 0.90535 0.91750 0.91606 0.92083 0.91098 0.91182 0.91582 0.88752 0.75739 0.87703 0.88490 0.85850 0.90583 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.37 -5.03 10.21 -35.23 -0.36 -5.39 16 3 C 0.09 1.07 2.19 -26.73 -0.06 1.02 16 4 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 5 C -0.14 -1.50 5.54 -26.73 -0.15 -1.64 16 6 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 7 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 8 C -0.14 -2.02 5.53 -26.73 -0.15 -2.17 16 9 C 0.16 2.34 2.48 -67.93 -0.17 2.18 16 10 H 0.10 1.64 7.50 -51.93 -0.39 1.25 16 11 N -1.11 -16.99 5.34 -4.89 -0.03 -17.01 16 12 S 2.69 52.17 5.72 -107.50 -0.61 51.55 16 13 O -0.97 -21.28 16.60 -57.17 -0.95 -22.23 16 14 O -0.98 -20.59 17.27 -57.17 -0.99 -21.57 16 15 C -0.63 -13.57 5.05 -39.66 -0.20 -13.77 16 16 C -0.15 -3.12 9.53 -39.29 -0.37 -3.49 16 17 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 18 C -0.12 -2.86 8.70 -38.87 -0.34 -3.20 16 19 C 0.09 2.35 5.57 -106.83 -0.60 1.75 16 20 C -0.46 -11.46 9.05 -37.74 -0.34 -11.80 16 21 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 22 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 23 N -0.79 -19.00 10.97 55.55 0.61 -18.39 16 24 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 28 C -0.13 -2.91 8.33 -38.87 -0.32 -3.23 16 29 H 0.04 0.33 8.09 -51.93 -0.42 -0.08 16 30 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.66 6.18 -51.93 -0.32 1.34 16 40 H 0.41 5.18 8.84 -34.47 -0.30 4.88 16 41 H 0.10 2.06 7.60 -52.48 -0.40 1.66 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.12 3.06 6.18 -52.48 -0.32 2.73 16 44 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 45 H 0.11 2.49 7.60 -52.49 -0.40 2.10 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -29.93 373.56 -10.84 -40.78 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.71 Total: 11.33 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: -2.41 Total: -37.38 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.58 Total: -35.40 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -2.30 Total: -49.20 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 52.17 SS G_CDS: -0.61 Total: 51.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.93 -10.84 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593640375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.463 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds