Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42104 * 108.57789 * 2 1 4 4 O 1.42097 * 108.57811 * 228.97757 * 2 1 3 5 5 C 1.81401 * 101.92065 * 114.48294 * 2 1 3 6 6 C 1.53001 * 109.46909 * 179.97438 * 5 2 1 7 7 H 1.08998 * 109.47077 * 305.00161 * 6 5 2 8 8 C 1.50703 * 109.46771 * 185.00609 * 6 5 2 9 9 O 1.21283 * 119.99488 * 239.99768 * 8 6 5 10 10 N 1.34777 * 120.00290 * 60.00208 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47008 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00362 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99653 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00420 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99928 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46710 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47158 * 119.99784 * 18 16 14 21 21 H 1.48502 * 109.46769 * 240.00242 * 18 16 14 22 22 C 1.50701 * 109.47098 * 65.00554 * 6 5 2 23 23 C 1.38231 * 119.99979 * 59.72493 * 22 6 5 24 24 C 1.38236 * 119.99842 * 179.80856 * 23 22 6 25 25 C 1.38235 * 119.99770 * 0.40033 * 24 23 22 26 26 C 1.38234 * 120.00146 * 359.85534 * 25 24 23 27 27 C 1.38230 * 119.99535 * 239.99777 * 22 6 5 28 28 H 1.08998 * 109.47005 * 305.51750 * 1 2 3 29 29 H 1.09005 * 109.46984 * 65.50940 * 1 2 3 30 30 H 1.08994 * 109.47126 * 185.51089 * 1 2 3 31 31 H 1.09002 * 109.46668 * 60.00058 * 5 2 1 32 32 H 1.08999 * 109.47354 * 300.00287 * 5 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 34 34 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 35 35 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 36 36 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 37 37 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 38 38 H 1.08990 * 109.47021 * 299.99845 * 13 12 11 39 39 H 1.09002 * 109.46620 * 60.00037 * 13 12 11 40 40 H 0.97000 * 120.00497 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.99812 * 359.97438 * 23 22 6 42 42 H 1.07995 * 120.00000 * 180.23032 * 24 23 22 43 43 H 1.08000 * 119.99823 * 179.83567 * 25 24 23 44 44 H 1.08004 * 120.00231 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.00428 * 359.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8194 1.7979 7 1 4.1427 -1.3634 0.9607 8 6 4.0174 -1.5411 3.0836 9 8 4.6467 -0.9810 3.9561 10 7 3.5972 -2.8090 3.2639 11 6 3.8952 -3.5083 4.5162 12 6 3.3042 -4.9187 4.4657 13 6 3.6160 -5.6494 5.7734 14 6 3.0334 -7.0383 5.7239 15 1 2.4949 -7.3672 4.8473 16 6 3.1886 -7.8896 6.7973 17 7 3.8447 -7.4894 7.8645 18 14 2.4670 -9.6116 6.7357 19 1 1.7810 -9.8145 5.4344 20 1 3.5561 -10.6102 6.8828 21 1 1.4896 -9.7784 7.8413 22 6 4.2829 0.5716 1.8498 23 6 3.8720 1.4544 2.8310 24 6 4.4046 2.7290 2.8809 25 6 5.3419 3.1236 1.9447 26 6 5.7489 2.2425 0.9603 27 6 5.2193 0.9665 0.9128 28 1 -0.3633 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3633 -1.0229 0.0987 31 1 1.7610 -1.7368 1.6665 32 1 1.7610 -0.1170 2.4043 33 1 3.0936 -3.2568 2.5662 34 1 4.9753 -3.5715 4.6489 35 1 3.4579 -2.9609 5.3511 36 1 2.2241 -4.8555 4.3330 37 1 3.7414 -5.4663 3.6308 38 1 4.6960 -5.7126 5.9056 39 1 3.1790 -5.1019 6.6085 40 1 3.9542 -8.0884 8.6196 41 1 3.1368 1.1473 3.5601 42 1 4.0863 3.4175 3.6497 43 1 5.7561 4.1203 1.9821 44 1 6.4810 2.5509 0.2286 45 1 5.5374 0.2781 0.1438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -91.871456 kcal Electronic energy + Delta-G solvation = -26988.427262 eV Core-core repulsion = 23097.993751 eV Total energy + Delta-G solvation = -3890.433511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.43427 -38.71447 -37.28773 -36.33897 -35.53409 -34.68165 -33.33621 -31.27106 -30.97398 -30.26909 -29.51168 -27.02397 -25.37745 -23.28033 -22.69681 -21.68225 -20.77997 -19.76593 -19.20971 -17.60108 -17.25019 -16.71905 -16.45516 -16.41354 -16.22516 -15.70484 -15.31465 -15.04214 -14.82445 -14.47844 -14.13544 -13.94031 -13.78649 -13.62694 -13.55896 -13.37108 -13.00396 -12.52692 -12.34796 -12.32138 -12.30518 -12.24109 -11.89071 -11.73327 -11.52052 -11.20380 -11.18108 -11.07105 -10.96032 -10.79570 -10.61309 -9.93857 -9.90254 -9.44510 -9.16248 -8.91117 -8.86050 -8.80012 -8.42168 -6.06444 -4.09821 -0.44867 1.24077 1.43272 2.31317 2.54948 3.16034 3.26571 3.30023 3.34449 3.37659 3.59052 3.77225 4.05679 4.20180 4.34609 4.39344 4.40334 4.54089 4.79193 4.84507 4.94453 4.98051 5.04954 5.16735 5.20723 5.29525 5.43761 5.57882 5.63455 5.69545 5.89990 5.99441 6.08009 6.36640 6.39358 6.45727 6.49578 6.51871 6.73967 6.92889 6.96170 7.56663 7.58289 7.69964 7.91935 8.24115 8.33135 8.97098 9.54799 11.04828 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.002418 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.710074 B =11576.709325 C =12882.063441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.419 3.581 3 O -0.917 6.917 4 O -0.936 6.936 5 C -0.612 4.612 6 C -0.051 4.051 7 H 0.118 0.882 8 C 0.521 3.479 9 O -0.523 6.523 10 N -0.724 5.724 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.090 4.090 23 C -0.072 4.072 24 C -0.120 4.120 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.099 4.099 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 20.447 -17.125 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.600 3.400 3 O -0.914 6.914 4 O -0.933 6.933 5 C -0.739 4.739 6 C -0.074 4.074 7 H 0.136 0.864 8 C 0.304 3.696 9 O -0.399 6.399 10 N -0.375 5.375 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.091 4.091 23 C -0.090 4.090 24 C -0.138 4.138 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.118 4.118 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.231 21.075 -16.944 27.371 hybrid contribution -1.286 -1.639 0.457 2.132 sum -5.516 19.436 -16.488 26.078 Atomic orbital electron populations 1.30312 1.26861 1.11783 1.11916 1.08002 0.78383 0.76335 0.77313 1.93658 1.78413 1.33485 1.85842 1.93615 1.79110 1.67248 1.53305 1.30499 1.03223 1.15123 1.25104 1.19963 0.91950 0.95616 0.99839 0.86439 1.19962 0.79762 0.81982 0.87891 1.90747 1.39161 1.66436 1.43527 1.46198 1.57113 1.13784 1.20437 1.21689 1.00997 0.93608 0.84348 1.21901 0.99591 0.92163 1.02276 1.19031 0.97347 0.94574 0.90445 1.21228 1.35062 0.98272 1.01534 0.92587 1.25035 0.95304 0.98634 0.95499 1.69971 1.41407 1.36235 1.05619 0.86528 0.78916 0.84498 0.77993 1.19754 1.20959 1.20995 1.19193 0.99231 0.92927 0.97744 1.20793 0.98983 0.93065 0.96192 1.21048 0.97596 0.96149 0.99017 1.21128 0.97268 0.99354 0.95061 1.20997 1.00159 0.93687 0.98793 1.20955 0.96020 0.96747 0.98036 0.85188 0.85147 0.85179 0.84097 0.83992 0.76842 0.91595 0.91649 0.92734 0.92611 0.96247 0.96304 0.92936 0.86419 0.86134 0.86260 0.86064 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.36 10.62 101.05 1.07 -1.29 16 2 S 2.42 16.98 5.22 -107.50 -0.56 16.42 16 3 O -0.92 -9.45 16.42 -57.83 -0.95 -10.40 16 4 O -0.94 -9.63 18.10 -57.83 -1.05 -10.68 16 5 C -0.61 -4.02 5.10 37.16 0.19 -3.84 16 6 C -0.05 -0.53 2.38 -92.92 -0.22 -0.75 16 7 H 0.12 1.02 7.88 -51.93 -0.41 0.61 16 8 C 0.52 7.08 7.03 -10.98 -0.08 7.00 16 9 O -0.52 -9.23 15.13 5.55 0.08 -9.15 16 10 N -0.72 -9.37 5.42 -60.30 -0.33 -9.70 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 12 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C -0.09 -1.08 2.73 -104.63 -0.29 -1.36 16 23 C -0.07 -0.87 7.88 -39.58 -0.31 -1.18 16 24 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 25 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 27 C -0.10 -1.15 9.40 -39.58 -0.37 -1.53 16 28 H 0.13 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.13 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.14 0.53 7.43 -51.92 -0.39 0.15 16 32 H 0.14 0.72 7.21 -51.92 -0.37 0.34 16 33 H 0.40 3.90 7.83 -40.82 -0.32 3.58 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.12 1.31 7.49 -52.49 -0.39 0.91 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.12 1.17 7.95 -52.48 -0.42 0.75 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -38.16 389.46 -10.04 -48.20 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.91 Total: 0.09 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -1.91 Total: -21.05 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.41 Total: -35.43 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -1.91 Total: -30.23 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 16.98 SS G_CDS: -0.56 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.16 -10.04 -48.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.674 kcal (2) G-P(sol) polarization free energy of solvation -38.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds