Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42104 * 108.57789 * 2 1 4 4 O 1.42097 * 108.57811 * 228.97757 * 2 1 3 5 5 C 1.81401 * 101.92065 * 114.48294 * 2 1 3 6 6 C 1.53001 * 109.46909 * 179.97438 * 5 2 1 7 7 H 1.08998 * 109.47077 * 305.00161 * 6 5 2 8 8 C 1.50703 * 109.46771 * 185.00609 * 6 5 2 9 9 O 1.21283 * 119.99488 * 239.99768 * 8 6 5 10 10 N 1.34777 * 120.00290 * 60.00208 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47008 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00362 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99653 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00420 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99928 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46710 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47158 * 119.99784 * 18 16 14 21 21 H 1.48502 * 109.46769 * 240.00242 * 18 16 14 22 22 C 1.50701 * 109.47098 * 65.00554 * 6 5 2 23 23 C 1.38231 * 119.99979 * 59.72493 * 22 6 5 24 24 C 1.38236 * 119.99842 * 179.80856 * 23 22 6 25 25 C 1.38235 * 119.99770 * 0.40033 * 24 23 22 26 26 C 1.38234 * 120.00146 * 359.85534 * 25 24 23 27 27 C 1.38230 * 119.99535 * 239.99777 * 22 6 5 28 28 H 1.08998 * 109.47005 * 305.51750 * 1 2 3 29 29 H 1.09005 * 109.46984 * 65.50940 * 1 2 3 30 30 H 1.08994 * 109.47126 * 185.51089 * 1 2 3 31 31 H 1.09002 * 109.46668 * 60.00058 * 5 2 1 32 32 H 1.08999 * 109.47354 * 300.00287 * 5 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 34 34 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 35 35 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 36 36 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 37 37 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 38 38 H 1.08990 * 109.47021 * 299.99845 * 13 12 11 39 39 H 1.09002 * 109.46620 * 60.00037 * 13 12 11 40 40 H 0.97000 * 120.00497 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.99812 * 359.97438 * 23 22 6 42 42 H 1.07995 * 120.00000 * 180.23032 * 24 23 22 43 43 H 1.08000 * 119.99823 * 179.83567 * 25 24 23 44 44 H 1.08004 * 120.00231 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.00428 * 359.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8194 1.7979 7 1 4.1427 -1.3634 0.9607 8 6 4.0174 -1.5411 3.0836 9 8 4.6467 -0.9810 3.9561 10 7 3.5972 -2.8090 3.2639 11 6 3.8952 -3.5083 4.5162 12 6 3.3042 -4.9187 4.4657 13 6 3.6160 -5.6494 5.7734 14 6 3.0334 -7.0383 5.7239 15 1 2.4949 -7.3672 4.8473 16 6 3.1886 -7.8896 6.7973 17 7 3.8447 -7.4894 7.8645 18 14 2.4670 -9.6116 6.7357 19 1 1.7810 -9.8145 5.4344 20 1 3.5561 -10.6102 6.8828 21 1 1.4896 -9.7784 7.8413 22 6 4.2829 0.5716 1.8498 23 6 3.8720 1.4544 2.8310 24 6 4.4046 2.7290 2.8809 25 6 5.3419 3.1236 1.9447 26 6 5.7489 2.2425 0.9603 27 6 5.2193 0.9665 0.9128 28 1 -0.3633 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3633 -1.0229 0.0987 31 1 1.7610 -1.7368 1.6665 32 1 1.7610 -0.1170 2.4043 33 1 3.0936 -3.2568 2.5662 34 1 4.9753 -3.5715 4.6489 35 1 3.4579 -2.9609 5.3511 36 1 2.2241 -4.8555 4.3330 37 1 3.7414 -5.4663 3.6308 38 1 4.6960 -5.7126 5.9056 39 1 3.1790 -5.1019 6.6085 40 1 3.9542 -8.0884 8.6196 41 1 3.1368 1.1473 3.5601 42 1 4.0863 3.4175 3.6497 43 1 5.7561 4.1203 1.9821 44 1 6.4810 2.5509 0.2286 45 1 5.5374 0.2781 0.1438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -119.475381 kcal Electronic energy + Delta-G solvation = -26989.624258 eV Core-core repulsion = 23097.993751 eV Total energy + Delta-G solvation = -3891.630507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.42483 -39.65990 -37.91357 -36.99376 -36.95519 -35.55588 -35.12249 -32.96387 -31.77845 -30.79810 -30.12042 -28.64740 -26.37662 -24.86693 -23.54051 -22.70638 -22.32350 -20.90702 -19.75580 -18.64814 -18.32318 -17.99779 -17.48924 -17.10529 -16.86990 -16.72946 -16.51010 -16.41152 -16.02260 -15.67372 -15.23620 -14.85595 -14.70501 -14.26953 -14.19473 -13.97800 -13.89844 -13.84774 -13.70941 -13.52523 -13.23351 -12.99631 -12.95774 -12.87490 -12.76225 -12.55245 -12.34832 -12.15041 -11.97872 -11.88384 -11.73191 -11.66986 -11.51996 -11.20829 -10.75088 -10.56217 -10.12551 -9.72398 -9.63003 -8.19710 -6.31000 -0.94358 0.41325 0.59210 1.41792 1.42371 1.51064 1.55128 1.85857 2.11786 2.42346 2.71190 2.96259 3.12558 3.14506 3.37607 3.52140 3.68253 3.97124 4.08126 4.12805 4.17732 4.19866 4.21492 4.24391 4.29709 4.36964 4.55657 4.58427 4.66112 4.82011 4.94978 4.98438 5.00596 5.11413 5.17966 5.18782 5.40833 5.53084 5.57747 5.62962 5.66501 5.71271 5.84732 6.16430 6.22190 6.52770 6.87318 7.19517 7.38954 8.92569 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.002418 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.710074 B =11576.709325 C =12882.063441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.423 3.577 3 O -0.958 6.958 4 O -0.975 6.975 5 C -0.614 4.614 6 C -0.049 4.049 7 H 0.132 0.868 8 C 0.523 3.477 9 O -0.568 6.568 10 N -0.711 5.711 11 C 0.130 3.870 12 C -0.103 4.103 13 C 0.023 3.977 14 C -0.538 4.538 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.257 1.257 20 H -0.282 1.282 21 H -0.280 1.280 22 C -0.103 4.103 23 C -0.091 4.091 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.121 4.121 28 H 0.152 0.848 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.417 0.583 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.067 0.933 38 H -0.011 1.011 39 H -0.007 1.007 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.534 20.005 -18.783 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.608 3.392 3 O -0.955 6.955 4 O -0.972 6.972 5 C -0.741 4.741 6 C -0.071 4.071 7 H 0.150 0.850 8 C 0.308 3.692 9 O -0.446 6.446 10 N -0.363 5.363 11 C 0.006 3.994 12 C -0.140 4.140 13 C -0.015 4.015 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.181 1.181 20 H -0.208 1.208 21 H -0.206 1.206 22 C -0.103 4.103 23 C -0.110 4.110 24 C -0.152 4.152 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.139 4.139 28 H 0.170 0.830 29 H 0.158 0.842 30 H 0.173 0.827 31 H 0.191 0.809 32 H 0.176 0.824 33 H 0.254 0.746 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.008 0.992 39 H 0.011 0.989 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.434 20.631 -18.656 28.550 hybrid contribution -0.614 -1.450 0.995 1.863 sum -7.049 19.181 -17.661 27.010 Atomic orbital electron populations 1.30156 1.21744 1.14097 1.13493 1.07590 0.80122 0.74883 0.76626 1.93608 1.80446 1.35199 1.86250 1.93565 1.81084 1.67775 1.54803 1.30556 1.00652 1.17526 1.25392 1.19949 0.94724 0.94486 0.97966 0.85010 1.20505 0.78531 0.81666 0.88459 1.90731 1.41088 1.67413 1.45405 1.45927 1.57154 1.13638 1.19619 1.21251 0.99525 0.92848 0.85795 1.21611 1.00931 0.92446 0.99062 1.18948 0.95064 0.94546 0.92933 1.21717 1.34774 0.99307 1.01826 0.91403 1.26022 0.95727 1.03278 0.95139 1.70117 1.43025 1.37977 1.06531 0.85384 0.78076 0.78846 0.78633 1.18066 1.20779 1.20606 1.19414 0.99433 0.93662 0.97813 1.20984 0.99645 0.93718 0.96604 1.21384 0.97768 0.96350 0.99690 1.21477 0.97057 1.00478 0.94707 1.21367 1.00459 0.93598 0.99339 1.21272 0.96363 0.97605 0.98638 0.82992 0.84249 0.82719 0.80903 0.82423 0.74603 0.93539 0.92821 0.90801 0.91415 0.99229 0.98899 0.92859 0.86244 0.84467 0.83916 0.84036 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.22 10.62 113.37 1.20 -1.02 16 2 S 2.42 29.92 5.22 -56.49 -0.29 29.63 16 3 O -0.96 -19.25 16.42 -127.37 -2.09 -21.34 16 4 O -0.98 -18.97 18.10 -127.37 -2.30 -21.27 16 5 C -0.61 -6.66 5.10 71.98 0.37 -6.30 16 6 C -0.05 -0.96 2.38 -12.28 -0.03 -0.99 16 7 H 0.13 2.14 7.88 -2.39 -0.02 2.12 16 8 C 0.52 13.85 7.03 87.66 0.62 14.47 16 9 O -0.57 -20.36 15.13 -3.04 -0.05 -20.41 16 10 N -0.71 -17.31 5.42 -463.07 -2.51 -19.82 16 11 C 0.13 4.27 5.67 86.38 0.49 4.76 16 12 C -0.10 -3.70 5.27 30.59 0.16 -3.54 16 13 C 0.02 1.15 4.97 29.85 0.15 1.30 16 14 C -0.54 -29.26 9.11 25.60 0.23 -29.02 16 15 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 18 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.10 -2.43 2.73 -19.87 -0.05 -2.49 16 23 C -0.09 -2.20 7.88 22.27 0.18 -2.03 16 24 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 25 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 26 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 27 C -0.12 -2.80 9.40 22.27 0.21 -2.60 16 28 H 0.15 -0.05 8.14 -2.39 -0.02 -0.06 16 29 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.17 0.66 7.43 -2.39 -0.02 0.64 16 32 H 0.16 1.22 7.21 -2.39 -0.02 1.21 16 33 H 0.42 6.96 7.83 -92.71 -0.73 6.24 16 34 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.12 2.67 7.49 -2.91 -0.02 2.65 16 42 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.13 2.56 7.95 -2.91 -0.02 2.54 16 Total: -1.00 -85.34 389.46 -0.02 -85.37 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.26 Total: 13.78 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.66 Total: -34.73 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -2.22 Total: -76.05 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -4.44 Total: -63.02 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 29.92 SS G_CDS: -0.29 Total: 29.63 kcal Total: -85.34 -0.02 -85.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.109 kcal (2) G-P(sol) polarization free energy of solvation -85.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds