Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42097 * 108.58006 * 2 1 4 4 O 1.42102 * 108.57472 * 228.97557 * 2 1 3 5 5 C 1.81392 * 101.92249 * 114.49085 * 2 1 3 6 6 C 1.53001 * 109.47379 * 185.73151 * 5 2 1 7 7 H 1.09006 * 109.46813 * 54.14432 * 6 5 2 8 8 C 1.50693 * 109.47691 * 174.14780 * 6 5 2 9 9 O 1.21277 * 120.00038 * 106.99771 * 8 6 5 10 10 N 1.34782 * 120.00247 * 287.00429 * 8 6 5 11 11 C 1.46496 * 119.99988 * 185.09109 * 10 8 6 12 12 C 1.53006 * 109.46960 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47173 * 179.97438 * 12 11 10 14 14 C 1.50691 * 109.47274 * 179.97438 * 13 12 11 15 15 H 1.08011 * 120.00244 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00332 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00220 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 120.00345 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46888 * 60.00269 * 18 16 14 20 20 H 1.48502 * 109.47250 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47039 * 300.00450 * 18 16 14 22 22 C 1.50701 * 109.47102 * 294.15123 * 6 5 2 23 23 C 1.38232 * 120.00201 * 119.99472 * 22 6 5 24 24 C 1.38236 * 120.00231 * 179.97438 * 23 22 6 25 25 C 1.38230 * 119.99929 * 359.97438 * 24 23 22 26 26 C 1.38241 * 120.00025 * 0.02562 * 25 24 23 27 27 C 1.38230 * 119.99855 * 0.06425 * 26 25 24 28 28 H 1.09003 * 109.46931 * 305.51241 * 1 2 3 29 29 H 1.09001 * 109.47373 * 65.50589 * 1 2 3 30 30 H 1.09002 * 109.47595 * 185.51384 * 1 2 3 31 31 H 1.09005 * 109.47289 * 65.73024 * 5 2 1 32 32 H 1.09000 * 109.47080 * 305.72957 * 5 2 1 33 33 H 0.97006 * 119.99473 * 5.09209 * 10 8 6 34 34 H 1.08997 * 109.47124 * 299.99834 * 11 10 8 35 35 H 1.09001 * 109.47307 * 60.00230 * 11 10 8 36 36 H 1.08999 * 109.46502 * 299.99870 * 12 11 10 37 37 H 1.09001 * 109.46971 * 59.99965 * 12 11 10 38 38 H 1.08999 * 109.47464 * 300.00169 * 13 12 11 39 39 H 1.09006 * 109.46773 * 59.99884 * 13 12 11 40 40 H 0.97001 * 120.00425 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.99739 * 359.97438 * 23 22 6 42 42 H 1.07997 * 120.00040 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00523 * 179.72027 * 25 24 23 44 44 H 1.08000 * 120.00098 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99998 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.6984 -0.6886 1.8592 7 1 4.0536 0.3352 1.7417 8 6 3.9966 -1.1666 3.2568 9 8 4.5008 -2.2558 3.4305 10 7 3.7029 -0.3837 4.3139 11 6 4.0934 -0.7985 5.6635 12 6 3.6438 0.2601 6.6725 13 6 4.0510 -0.1733 8.0822 14 6 3.6088 0.8696 9.0759 15 1 3.0887 1.7532 8.7361 16 6 3.8670 0.6956 10.4190 17 7 4.4997 -0.3805 10.8329 18 14 3.3180 1.9881 11.6509 19 1 1.8421 2.1386 11.5860 20 1 3.7135 1.5675 13.0191 21 1 3.9627 3.2861 11.3269 22 6 4.3962 -1.5795 0.8639 23 6 5.3259 -1.0458 -0.0087 24 6 5.9664 -1.8631 -0.9212 25 6 5.6775 -3.2143 -0.9607 26 6 4.7477 -3.7481 -0.0881 27 6 4.1059 -2.9305 0.8232 28 1 -0.3633 0.5970 0.8365 29 1 -0.3634 0.4261 -0.9352 30 1 -0.3634 -1.0229 0.0987 31 1 1.8505 -1.7719 1.6297 32 1 1.6766 -0.1753 2.3973 33 1 3.2329 0.4544 4.1809 34 1 3.6205 -1.7512 5.9020 35 1 5.1768 -0.9088 5.7106 36 1 4.1164 1.2130 6.4342 37 1 2.5603 0.3700 6.6254 38 1 3.5782 -1.1261 8.3202 39 1 5.1345 -0.2835 8.1296 40 1 4.6817 -0.5028 11.7778 41 1 5.5519 0.0099 0.0225 42 1 6.6930 -1.4461 -1.6027 43 1 6.1745 -3.8521 -1.6766 44 1 4.5217 -4.8038 -0.1192 45 1 3.3798 -3.3476 1.5052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -92.731348 kcal Electronic energy + Delta-G solvation = -26946.244311 eV Core-core repulsion = 23055.773512 eV Total energy + Delta-G solvation = -3890.470799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.43727 -38.71642 -37.29680 -36.34357 -35.54668 -34.63473 -33.33964 -31.26461 -30.97935 -30.29323 -29.52745 -27.05263 -25.35202 -23.26154 -22.69652 -21.68048 -20.77836 -19.78159 -19.21332 -17.59367 -17.23447 -16.69388 -16.45794 -16.43891 -16.21959 -15.72032 -15.28549 -15.05768 -14.81556 -14.48333 -14.14017 -14.00645 -13.78868 -13.63684 -13.56152 -13.33185 -12.95977 -12.52258 -12.34434 -12.32865 -12.31015 -12.26159 -11.89057 -11.74462 -11.51806 -11.22036 -11.17786 -11.06588 -10.91788 -10.78559 -10.65980 -9.92455 -9.90111 -9.43967 -9.18240 -8.91729 -8.87287 -8.80493 -8.40897 -6.05516 -4.09064 -0.45441 1.21570 1.42352 2.31235 2.53695 3.14335 3.29168 3.32692 3.34365 3.36394 3.58310 3.76626 4.05486 4.22192 4.34023 4.39800 4.40949 4.53562 4.78933 4.85252 4.93866 4.97712 5.06002 5.16731 5.19909 5.30215 5.43493 5.58015 5.64066 5.70147 5.88913 5.99506 6.08638 6.36707 6.38902 6.45874 6.49178 6.52538 6.74698 6.93519 6.95104 7.57009 7.58471 7.70663 7.92590 8.23646 8.33813 8.97384 9.55399 11.05698 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.002394 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.218416 B =11692.365161 C =12968.881659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.420 3.580 3 O -0.935 6.935 4 O -0.919 6.919 5 C -0.610 4.610 6 C -0.051 4.051 7 H 0.117 0.883 8 C 0.522 3.478 9 O -0.524 6.524 10 N -0.724 5.724 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.099 4.099 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.122 4.122 27 C -0.066 4.066 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 -1.819 -26.555 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.600 3.400 3 O -0.932 6.932 4 O -0.916 6.916 5 C -0.738 4.738 6 C -0.074 4.074 7 H 0.135 0.865 8 C 0.305 3.695 9 O -0.400 6.400 10 N -0.375 5.375 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.099 4.099 23 C -0.121 4.121 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.140 4.140 27 C -0.084 4.084 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.574 -2.405 -26.886 27.563 hybrid contribution -1.158 0.821 1.492 2.059 sum -6.732 -1.584 -25.394 26.318 Atomic orbital electron populations 1.30320 1.26878 1.11768 1.11951 1.07990 0.78344 0.76053 0.77610 1.93613 1.79083 1.34236 1.86249 1.93649 1.78466 1.66550 1.52920 1.30479 1.03106 1.15481 1.24699 1.19938 0.91589 1.01827 0.94017 0.86506 1.19951 0.78821 0.85157 0.85568 1.90732 1.42917 1.20578 1.85763 1.46197 1.59507 1.24306 1.07520 1.21692 1.00313 0.99356 0.79274 1.21902 1.00292 0.96783 0.96957 1.19018 0.97054 0.96928 0.88313 1.21157 1.37512 1.05864 0.91724 0.92686 1.25028 0.95172 0.95603 0.98609 1.69950 1.40971 1.26821 1.15517 0.86639 0.79051 0.81869 0.80316 1.20246 1.21250 1.20210 1.19257 0.99378 0.94591 0.96695 1.21008 0.95773 0.99889 0.95392 1.21009 1.00088 0.93898 0.98889 1.21151 0.97586 0.95321 0.98644 1.21082 0.97197 0.99677 0.96060 1.20858 0.98797 0.92484 0.96285 0.85168 0.85125 0.85186 0.83934 0.84107 0.76761 0.91600 0.91651 0.92604 0.92717 0.96308 0.96276 0.92822 0.85967 0.86001 0.86212 0.86076 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.35 10.62 101.05 1.07 -1.28 16 2 S 2.42 17.23 5.13 -107.50 -0.55 16.68 16 3 O -0.93 -9.63 17.98 -57.83 -1.04 -10.67 16 4 O -0.92 -9.64 16.99 -57.83 -0.98 -10.62 16 5 C -0.61 -4.09 5.13 37.16 0.19 -3.90 16 6 C -0.05 -0.53 2.35 -92.93 -0.22 -0.75 16 7 H 0.12 1.02 7.77 -51.93 -0.40 0.61 16 8 C 0.52 7.09 6.98 -10.99 -0.08 7.02 16 9 O -0.52 -9.14 14.72 5.56 0.08 -9.06 16 10 N -0.72 -9.45 5.55 -60.30 -0.33 -9.78 16 11 C 0.12 1.93 5.68 -4.04 -0.02 1.91 16 12 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 13 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 14 C -0.52 -14.38 9.11 -34.45 -0.31 -14.70 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.10 -1.19 3.07 -104.62 -0.32 -1.51 16 23 C -0.10 -1.19 9.67 -39.58 -0.38 -1.57 16 24 C -0.12 -1.31 10.05 -39.59 -0.40 -1.70 16 25 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 27 C -0.07 -0.81 7.77 -39.58 -0.31 -1.11 16 28 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.14 0.77 7.20 -51.92 -0.37 0.39 16 32 H 0.14 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.40 3.97 8.48 -40.82 -0.35 3.63 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.12 1.19 7.95 -52.49 -0.42 0.77 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.39 7.17 -52.49 -0.38 1.02 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -38.02 390.95 -10.12 -48.15 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.95 Total: 0.35 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -1.95 Total: -21.32 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.40 Total: -35.58 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.94 Total: -30.35 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -0.55 Total: 16.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.02 -10.12 -48.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.585 kcal (2) G-P(sol) polarization free energy of solvation -38.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds