Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42097 * 108.58006 * 2 1 4 4 O 1.42102 * 108.57472 * 228.97557 * 2 1 3 5 5 C 1.81392 * 101.92249 * 114.49085 * 2 1 3 6 6 C 1.53001 * 109.47379 * 185.73151 * 5 2 1 7 7 H 1.09006 * 109.46813 * 54.14432 * 6 5 2 8 8 C 1.50693 * 109.47691 * 174.14780 * 6 5 2 9 9 O 1.21277 * 120.00038 * 106.99771 * 8 6 5 10 10 N 1.34782 * 120.00247 * 287.00429 * 8 6 5 11 11 C 1.46496 * 119.99988 * 185.09109 * 10 8 6 12 12 C 1.53006 * 109.46960 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47173 * 179.97438 * 12 11 10 14 14 C 1.50691 * 109.47274 * 179.97438 * 13 12 11 15 15 H 1.08011 * 120.00244 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00332 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00220 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 120.00345 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46888 * 60.00269 * 18 16 14 20 20 H 1.48502 * 109.47250 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47039 * 300.00450 * 18 16 14 22 22 C 1.50701 * 109.47102 * 294.15123 * 6 5 2 23 23 C 1.38232 * 120.00201 * 119.99472 * 22 6 5 24 24 C 1.38236 * 120.00231 * 179.97438 * 23 22 6 25 25 C 1.38230 * 119.99929 * 359.97438 * 24 23 22 26 26 C 1.38241 * 120.00025 * 0.02562 * 25 24 23 27 27 C 1.38230 * 119.99855 * 0.06425 * 26 25 24 28 28 H 1.09003 * 109.46931 * 305.51241 * 1 2 3 29 29 H 1.09001 * 109.47373 * 65.50589 * 1 2 3 30 30 H 1.09002 * 109.47595 * 185.51384 * 1 2 3 31 31 H 1.09005 * 109.47289 * 65.73024 * 5 2 1 32 32 H 1.09000 * 109.47080 * 305.72957 * 5 2 1 33 33 H 0.97006 * 119.99473 * 5.09209 * 10 8 6 34 34 H 1.08997 * 109.47124 * 299.99834 * 11 10 8 35 35 H 1.09001 * 109.47307 * 60.00230 * 11 10 8 36 36 H 1.08999 * 109.46502 * 299.99870 * 12 11 10 37 37 H 1.09001 * 109.46971 * 59.99965 * 12 11 10 38 38 H 1.08999 * 109.47464 * 300.00169 * 13 12 11 39 39 H 1.09006 * 109.46773 * 59.99884 * 13 12 11 40 40 H 0.97001 * 120.00425 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.99739 * 359.97438 * 23 22 6 42 42 H 1.07997 * 120.00040 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00523 * 179.72027 * 25 24 23 44 44 H 1.08000 * 120.00098 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99998 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.6984 -0.6886 1.8592 7 1 4.0536 0.3352 1.7417 8 6 3.9966 -1.1666 3.2568 9 8 4.5008 -2.2558 3.4305 10 7 3.7029 -0.3837 4.3139 11 6 4.0934 -0.7985 5.6635 12 6 3.6438 0.2601 6.6725 13 6 4.0510 -0.1733 8.0822 14 6 3.6088 0.8696 9.0759 15 1 3.0887 1.7532 8.7361 16 6 3.8670 0.6956 10.4190 17 7 4.4997 -0.3805 10.8329 18 14 3.3180 1.9881 11.6509 19 1 1.8421 2.1386 11.5860 20 1 3.7135 1.5675 13.0191 21 1 3.9627 3.2861 11.3269 22 6 4.3962 -1.5795 0.8639 23 6 5.3259 -1.0458 -0.0087 24 6 5.9664 -1.8631 -0.9212 25 6 5.6775 -3.2143 -0.9607 26 6 4.7477 -3.7481 -0.0881 27 6 4.1059 -2.9305 0.8232 28 1 -0.3633 0.5970 0.8365 29 1 -0.3634 0.4261 -0.9352 30 1 -0.3634 -1.0229 0.0987 31 1 1.8505 -1.7719 1.6297 32 1 1.6766 -0.1753 2.3973 33 1 3.2329 0.4544 4.1809 34 1 3.6205 -1.7512 5.9020 35 1 5.1768 -0.9088 5.7106 36 1 4.1164 1.2130 6.4342 37 1 2.5603 0.3700 6.6254 38 1 3.5782 -1.1261 8.3202 39 1 5.1345 -0.2835 8.1296 40 1 4.6817 -0.5028 11.7778 41 1 5.5519 0.0099 0.0225 42 1 6.6930 -1.4461 -1.6027 43 1 6.1745 -3.8521 -1.6766 44 1 4.5217 -4.8038 -0.1192 45 1 3.3798 -3.3476 1.5052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -120.307721 kcal Electronic energy + Delta-G solvation = -26947.440112 eV Core-core repulsion = 23055.773512 eV Total energy + Delta-G solvation = -3891.666600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.42976 -39.66823 -37.92909 -37.00624 -36.96463 -35.50288 -35.14369 -32.97260 -31.79140 -30.82760 -30.12600 -28.68036 -26.37659 -24.84584 -23.54619 -22.71283 -22.32385 -20.93108 -19.76642 -18.63115 -18.34293 -17.98525 -17.43746 -17.15767 -16.86890 -16.76330 -16.50594 -16.44006 -15.98792 -15.67559 -15.31590 -14.81746 -14.73248 -14.25449 -14.19586 -13.97518 -13.90270 -13.83896 -13.73837 -13.48979 -13.25063 -13.01604 -12.97097 -12.89933 -12.70782 -12.55667 -12.41350 -12.15049 -12.00509 -11.90032 -11.71988 -11.66128 -11.52192 -11.24246 -10.75090 -10.54721 -10.12607 -9.74182 -9.65772 -8.19431 -6.31009 -0.95512 0.38013 0.57467 1.42055 1.44809 1.50115 1.52632 1.85116 2.11236 2.42523 2.72099 2.94033 3.12119 3.14504 3.36196 3.53210 3.68559 3.97257 4.07249 4.12119 4.17562 4.19335 4.21190 4.23515 4.29440 4.35662 4.55458 4.57893 4.65044 4.81598 4.94674 4.97879 4.99727 5.09767 5.17586 5.17933 5.40719 5.52521 5.56221 5.62426 5.65138 5.71062 5.84459 6.14479 6.22140 6.52689 6.86845 7.18813 7.38875 8.92449 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.002394 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.218416 B =11692.365161 C =12968.881659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.422 3.578 3 O -0.973 6.973 4 O -0.961 6.961 5 C -0.612 4.612 6 C -0.049 4.049 7 H 0.132 0.868 8 C 0.524 3.476 9 O -0.567 6.567 10 N -0.712 5.712 11 C 0.130 3.870 12 C -0.103 4.103 13 C 0.024 3.976 14 C -0.541 4.541 15 H 0.068 0.932 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.118 4.118 26 C -0.136 4.136 27 C -0.086 4.086 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.175 0.825 33 H 0.417 0.583 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.072 0.928 38 H -0.008 1.008 39 H -0.011 1.011 40 H 0.263 0.737 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -0.215 -27.351 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.607 3.393 3 O -0.970 6.970 4 O -0.958 6.958 5 C -0.740 4.740 6 C -0.071 4.071 7 H 0.150 0.850 8 C 0.309 3.691 9 O -0.445 6.445 10 N -0.364 5.364 11 C 0.006 3.994 12 C -0.141 4.141 13 C -0.014 4.014 14 C -0.579 4.579 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.112 4.112 23 C -0.141 4.141 24 C -0.149 4.149 25 C -0.135 4.135 26 C -0.154 4.154 27 C -0.104 4.104 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.192 0.808 33 H 0.254 0.746 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.011 0.989 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.152 0.848 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.666 -0.761 -27.717 28.767 hybrid contribution -0.526 0.268 1.713 1.812 sum -8.193 -0.494 -26.004 27.268 Atomic orbital electron populations 1.30158 1.21603 1.14015 1.13687 1.07604 0.80162 0.74586 0.76929 1.93562 1.81077 1.35758 1.86643 1.93597 1.80560 1.67140 1.54529 1.30537 1.00710 1.17052 1.25652 1.19935 0.94173 1.02019 0.91018 0.85013 1.20488 0.77579 0.84375 0.86646 1.90717 1.44714 1.22552 1.86514 1.45935 1.59493 1.25059 1.05949 1.21250 0.99037 0.98239 0.80866 1.21611 1.01372 0.97458 0.93613 1.18934 0.94917 0.95545 0.91998 1.21665 1.37170 1.06584 0.92509 0.91419 1.26019 0.95214 0.97817 1.01040 1.70104 1.42490 1.29074 1.15955 0.85487 0.79159 0.79053 0.77263 1.18874 1.21304 1.19087 1.19483 0.99680 0.94881 0.97150 1.21324 0.96068 1.00812 0.95897 1.21385 1.00329 0.94205 0.99026 1.21502 0.97431 0.95718 0.98897 1.21414 0.97327 1.00636 0.96039 1.21024 0.99465 0.93017 0.96864 0.82641 0.84185 0.82957 0.82660 0.80763 0.74570 0.92877 0.93472 0.91380 0.90907 0.98937 0.99217 0.92835 0.84838 0.83898 0.83805 0.84448 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.20 10.62 113.37 1.20 -1.00 16 2 S 2.42 30.57 5.13 -56.49 -0.29 30.28 16 3 O -0.97 -18.97 17.98 -127.37 -2.29 -21.26 16 4 O -0.96 -19.77 16.99 -127.37 -2.16 -21.93 16 5 C -0.61 -6.89 5.13 71.98 0.37 -6.52 16 6 C -0.05 -0.97 2.35 -12.29 -0.03 -1.00 16 7 H 0.13 2.14 7.77 -2.38 -0.02 2.12 16 8 C 0.52 13.89 6.98 87.65 0.61 14.50 16 9 O -0.57 -20.07 14.72 -3.02 -0.04 -20.11 16 10 N -0.71 -17.56 5.55 -463.07 -2.57 -20.13 16 11 C 0.13 4.32 5.68 86.38 0.49 4.81 16 12 C -0.10 -3.74 5.27 30.60 0.16 -3.58 16 13 C 0.02 1.20 4.97 29.84 0.15 1.35 16 14 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 15 H 0.07 3.44 7.74 -2.90 -0.02 3.42 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 17 N -0.94 -56.68 13.29 21.45 0.28 -56.40 16 18 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C -0.11 -2.67 3.07 -19.87 -0.06 -2.73 16 23 C -0.12 -2.85 9.67 22.27 0.22 -2.64 16 24 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 25 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 26 C -0.14 -3.05 10.05 22.27 0.22 -2.83 16 27 C -0.09 -2.11 7.77 22.27 0.17 -1.94 16 28 H 0.16 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.16 1.37 7.20 -2.39 -0.02 1.35 16 32 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.42 7.17 8.48 -92.70 -0.79 6.39 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.13 2.60 7.95 -2.91 -0.02 2.57 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 45 H 0.12 2.83 7.17 -2.91 -0.02 2.81 16 Total: -1.00 -85.10 390.95 -0.20 -85.30 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.20 Total: 14.54 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 4.65 Total: -35.40 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -2.29 Total: -76.53 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -4.50 Total: -63.30 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 30.57 SS G_CDS: -0.29 Total: 30.28 kcal Total: -85.10 -0.20 -85.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.011 kcal (2) G-P(sol) polarization free energy of solvation -85.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds