Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42104 * 110.54087 * 2 1 4 4 O 1.42097 * 110.54541 * 223.24458 * 2 1 3 5 5 C 1.76205 * 104.44735 * 111.62041 * 2 1 3 6 6 C 1.38233 * 119.99604 * 90.00125 * 5 2 1 7 7 C 1.38235 * 119.99857 * 179.97438 * 6 5 2 8 8 C 1.38243 * 119.99661 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99403 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.50989 * 24.91891 * 9 8 7 11 11 C 1.53096 * 109.50622 * 264.78158 * 9 8 7 12 12 N 1.47014 * 109.25675 * 183.21905 * 11 9 8 13 13 C 1.46900 * 111.00019 * 182.39166 * 12 11 9 14 14 C 1.53007 * 109.47281 * 190.00296 * 13 12 11 15 15 C 1.50701 * 109.46960 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99494 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00501 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47247 * 89.99641 * 19 17 15 21 21 H 1.48502 * 109.47314 * 210.00137 * 19 17 15 22 22 H 1.48501 * 109.47078 * 329.99961 * 19 17 15 23 23 C 1.47017 * 110.75303 * 58.61803 * 12 11 9 24 24 C 1.53103 * 109.25606 * 301.38548 * 23 12 11 25 25 O 1.43010 * 109.25776 * 56.84682 * 24 23 12 26 26 C 1.38229 * 120.00104 * 0.27896 * 8 7 6 27 27 C 1.38232 * 119.99974 * 269.98027 * 5 2 1 28 28 H 1.08993 * 109.46998 * 308.37690 * 1 2 3 29 29 H 1.08996 * 109.46406 * 68.37695 * 1 2 3 30 30 H 1.08990 * 109.46772 * 188.37501 * 1 2 3 31 31 H 1.07999 * 120.00220 * 359.97438 * 6 5 2 32 32 H 1.07994 * 120.00188 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.50887 * 303.15477 * 11 9 8 34 34 H 1.09000 * 109.50513 * 63.28808 * 11 9 8 35 35 H 1.09005 * 109.47237 * 310.00417 * 13 12 11 36 36 H 1.09000 * 109.47112 * 70.00350 * 13 12 11 37 37 H 1.09001 * 109.46397 * 300.00025 * 14 13 12 38 38 H 1.09000 * 109.47004 * 59.99988 * 14 13 12 39 39 H 0.97004 * 120.00438 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.50736 * 61.31913 * 23 12 11 41 41 H 1.08995 * 109.50709 * 181.40518 * 23 12 11 42 42 H 1.08993 * 109.50340 * 296.90966 * 24 23 12 43 43 H 1.08999 * 109.50068 * 176.78574 * 24 23 12 44 44 H 1.08002 * 119.99629 * 179.73042 * 26 8 7 45 45 H 1.08000 * 120.00169 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3128 -0.9693 -0.9116 5 6 2.2537 -0.6287 1.5863 6 6 2.4261 -1.9882 1.7673 7 6 2.7715 -2.4815 3.0116 8 6 2.9450 -1.6150 4.0748 9 6 3.3221 -2.1527 5.4311 10 1 3.8319 -3.1091 5.3147 11 6 2.0587 -2.3451 6.2742 12 7 2.4384 -2.7961 7.6209 13 6 1.2497 -3.0475 8.4466 14 6 1.6755 -3.2703 9.8992 15 6 0.4561 -3.5289 10.7460 16 1 -0.5245 -3.5334 10.2935 17 6 0.5923 -3.7586 12.0986 18 7 1.7864 -3.7527 12.6498 19 14 -0.9193 -4.0784 13.1486 20 1 -1.1998 -5.5363 13.1814 21 1 -0.6751 -3.5901 14.5296 22 1 -2.0846 -3.3631 12.5694 23 6 3.3303 -1.8206 8.2647 24 6 4.5810 -1.6335 7.4017 25 8 4.1907 -1.2255 6.0878 26 6 2.7674 -0.2560 3.8949 27 6 2.4265 0.2376 2.6495 28 1 -0.3633 0.6380 0.8056 29 1 -0.3632 0.3787 -0.9554 30 1 -0.3632 -1.0166 0.1497 31 1 2.2910 -2.6651 0.9366 32 1 2.9059 -3.5436 3.1532 33 1 1.5210 -1.3996 6.3451 34 1 1.4195 -3.0939 5.8063 35 1 0.5809 -2.1885 8.3917 36 1 0.7332 -3.9343 8.0793 37 1 2.3443 -4.1293 9.9540 38 1 2.1921 -2.3836 10.2665 39 1 1.8822 -3.9140 13.6015 40 1 2.8129 -0.8667 8.3675 41 1 3.6187 -2.1862 9.2502 42 1 5.1270 -2.5750 7.3433 43 1 5.2186 -0.8692 7.8459 44 1 2.8987 0.4204 4.7265 45 1 2.2917 1.2998 2.5080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599518945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -80.536640 kcal Electronic energy + Delta-G solvation = -26767.199039 eV Core-core repulsion = 22877.257042 eV Total energy + Delta-G solvation = -3889.941997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.25252 -38.83503 -37.45046 -36.29089 -35.94497 -33.26351 -32.96335 -31.34912 -30.12504 -29.97856 -29.66723 -26.77044 -24.64709 -23.77879 -23.12661 -22.37951 -20.69385 -19.71863 -19.39177 -18.18591 -16.91915 -16.59256 -16.56210 -16.22690 -15.98004 -15.55907 -14.93628 -14.85704 -14.74469 -14.62118 -14.34800 -14.06806 -13.76602 -13.66201 -13.63426 -13.42571 -13.18703 -12.72861 -12.43154 -12.32843 -12.32071 -12.01672 -11.72653 -11.62434 -11.47538 -11.29702 -11.12803 -10.98504 -10.88653 -10.61262 -10.50554 -10.06833 -9.83193 -9.59017 -9.31376 -9.20270 -9.14704 -8.43518 -7.94240 -6.08983 -4.11749 -0.32701 0.48477 1.03272 2.49228 3.06841 3.26254 3.32767 3.35441 3.55736 3.65812 3.73831 4.13564 4.32651 4.38046 4.40993 4.57934 4.61078 4.68201 4.91112 5.04939 5.11156 5.18330 5.18606 5.26461 5.28457 5.38895 5.44610 5.49122 5.63285 5.66538 5.78169 5.81825 5.91395 6.00323 6.16712 6.20773 6.29871 6.33546 6.53691 6.77664 7.12262 7.27231 7.39173 7.61002 7.72752 7.92820 8.32053 8.94371 9.52568 11.02345 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.002051 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.224009 B =13647.801872 C =14320.692640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.502 3.498 3 O -0.939 6.939 4 O -0.939 6.939 5 C -0.663 4.663 6 C -0.025 4.025 7 C -0.129 4.129 8 C -0.020 4.020 9 C 0.127 3.873 10 H 0.081 0.919 11 C 0.030 3.970 12 N -0.537 5.537 13 C 0.063 3.937 14 C 0.022 3.978 15 C -0.523 4.523 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.013 3.987 24 C 0.065 3.935 25 O -0.382 6.382 26 C -0.113 4.113 27 C -0.027 4.027 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.038 0.962 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.138 0.862 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 6.778 -23.917 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.682 3.318 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.750 4.750 6 C -0.044 4.044 7 C -0.148 4.148 8 C -0.020 4.020 9 C 0.068 3.932 10 H 0.099 0.901 11 C -0.098 4.098 12 N -0.262 5.262 13 C -0.064 4.064 14 C -0.016 4.016 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.115 4.115 24 C -0.012 4.012 25 O -0.301 6.301 26 C -0.132 4.132 27 C -0.046 4.046 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.156 0.844 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.138 6.740 -24.510 25.445 hybrid contribution -1.838 0.001 1.765 2.548 sum -0.699 6.741 -22.746 23.734 Atomic orbital electron populations 1.30222 1.25711 1.12203 1.11854 1.05077 0.77817 0.74603 0.74352 1.93589 1.77319 1.36578 1.86134 1.93584 1.77336 1.61656 1.61098 1.30461 1.19605 1.03084 1.21868 1.20864 0.92937 0.93138 0.97498 1.21119 1.01258 1.00304 0.92099 1.20034 0.93753 0.94186 0.94048 1.21006 0.91274 0.92605 0.88274 0.90145 1.22679 0.95812 0.99877 0.91462 1.62368 1.18820 1.43337 1.01711 1.22369 0.89067 0.98930 0.96001 1.19235 0.97109 0.97599 0.87622 1.21146 0.93154 1.48888 0.93034 0.92734 1.24991 0.95931 0.95304 0.98053 1.69954 1.21840 1.49571 1.11839 0.86570 0.83105 0.78533 0.79646 1.20571 1.21169 1.19928 1.22887 0.94037 0.94712 0.99836 1.22777 0.96059 1.00719 0.81603 1.87926 1.66025 1.46341 1.29812 1.21197 0.99014 0.95323 0.97636 1.20956 0.92758 0.99408 0.91433 0.84898 0.85052 0.84900 0.83952 0.84620 0.94190 0.89929 0.95988 0.91673 0.95632 0.96165 0.92890 0.94346 0.87672 0.92188 0.88341 0.84393 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.16 10.80 101.05 1.09 -1.07 16 2 S 2.50 18.34 5.80 -107.50 -0.62 17.71 16 3 O -0.94 -9.93 17.13 -57.54 -0.99 -10.92 16 4 O -0.94 -9.72 17.13 -57.54 -0.99 -10.71 16 5 C -0.66 -5.84 5.66 -39.59 -0.22 -6.07 16 6 C -0.03 -0.23 9.47 -39.58 -0.37 -0.60 16 7 C -0.13 -1.24 9.68 -39.58 -0.38 -1.62 16 8 C -0.02 -0.22 5.01 -104.62 -0.52 -0.74 16 9 C 0.13 1.61 3.02 -27.83 -0.08 1.53 16 10 H 0.08 0.99 8.05 -51.93 -0.42 0.58 16 11 C 0.03 0.43 4.89 -3.71 -0.02 0.42 16 12 N -0.54 -9.29 4.88 -234.29 -1.14 -10.43 16 13 C 0.06 1.27 5.22 -3.82 -0.02 1.25 16 14 C 0.02 0.53 4.24 -27.88 -0.12 0.42 16 15 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 23 C 0.01 0.22 4.94 -3.71 -0.02 0.20 16 24 C 0.06 0.88 7.01 37.21 0.26 1.14 16 25 O -0.38 -5.32 9.63 -35.23 -0.34 -5.66 16 26 C -0.11 -1.24 9.35 -39.59 -0.37 -1.61 16 27 C -0.03 -0.25 9.47 -39.58 -0.37 -0.63 16 28 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.14 0.96 7.57 -52.49 -0.40 0.56 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.52 6.28 -51.93 -0.33 0.20 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 1.93 6.05 -51.93 -0.31 1.61 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 45 H 0.14 1.09 7.57 -52.49 -0.40 0.69 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -35.25 378.78 -11.09 -46.34 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.86 Total: -2.28 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.57 Total: -20.56 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.41 Total: -35.80 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -2.31 Total: -27.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 18.34 SS G_CDS: -0.62 Total: 17.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.25 -11.09 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599518945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.198 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds