Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42104 * 110.54087 * 2 1 4 4 O 1.42097 * 110.54541 * 223.24458 * 2 1 3 5 5 C 1.76205 * 104.44735 * 111.62041 * 2 1 3 6 6 C 1.38233 * 119.99604 * 90.00125 * 5 2 1 7 7 C 1.38235 * 119.99857 * 179.97438 * 6 5 2 8 8 C 1.38243 * 119.99661 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99403 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.50989 * 24.91891 * 9 8 7 11 11 C 1.53096 * 109.50622 * 264.78158 * 9 8 7 12 12 N 1.47014 * 109.25675 * 183.21905 * 11 9 8 13 13 C 1.46900 * 111.00019 * 182.39166 * 12 11 9 14 14 C 1.53007 * 109.47281 * 190.00296 * 13 12 11 15 15 C 1.50701 * 109.46960 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99494 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00501 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47247 * 89.99641 * 19 17 15 21 21 H 1.48502 * 109.47314 * 210.00137 * 19 17 15 22 22 H 1.48501 * 109.47078 * 329.99961 * 19 17 15 23 23 C 1.47017 * 110.75303 * 58.61803 * 12 11 9 24 24 C 1.53103 * 109.25606 * 301.38548 * 23 12 11 25 25 O 1.43010 * 109.25776 * 56.84682 * 24 23 12 26 26 C 1.38229 * 120.00104 * 0.27896 * 8 7 6 27 27 C 1.38232 * 119.99974 * 269.98027 * 5 2 1 28 28 H 1.08993 * 109.46998 * 308.37690 * 1 2 3 29 29 H 1.08996 * 109.46406 * 68.37695 * 1 2 3 30 30 H 1.08990 * 109.46772 * 188.37501 * 1 2 3 31 31 H 1.07999 * 120.00220 * 359.97438 * 6 5 2 32 32 H 1.07994 * 120.00188 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.50887 * 303.15477 * 11 9 8 34 34 H 1.09000 * 109.50513 * 63.28808 * 11 9 8 35 35 H 1.09005 * 109.47237 * 310.00417 * 13 12 11 36 36 H 1.09000 * 109.47112 * 70.00350 * 13 12 11 37 37 H 1.09001 * 109.46397 * 300.00025 * 14 13 12 38 38 H 1.09000 * 109.47004 * 59.99988 * 14 13 12 39 39 H 0.97004 * 120.00438 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.50736 * 61.31913 * 23 12 11 41 41 H 1.08995 * 109.50709 * 181.40518 * 23 12 11 42 42 H 1.08993 * 109.50340 * 296.90966 * 24 23 12 43 43 H 1.08999 * 109.50068 * 176.78574 * 24 23 12 44 44 H 1.08002 * 119.99629 * 179.73042 * 26 8 7 45 45 H 1.08000 * 120.00169 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3128 -0.9693 -0.9116 5 6 2.2537 -0.6287 1.5863 6 6 2.4261 -1.9882 1.7673 7 6 2.7715 -2.4815 3.0116 8 6 2.9450 -1.6150 4.0748 9 6 3.3221 -2.1527 5.4311 10 1 3.8319 -3.1091 5.3147 11 6 2.0587 -2.3451 6.2742 12 7 2.4384 -2.7961 7.6209 13 6 1.2497 -3.0475 8.4466 14 6 1.6755 -3.2703 9.8992 15 6 0.4561 -3.5289 10.7460 16 1 -0.5245 -3.5334 10.2935 17 6 0.5923 -3.7586 12.0986 18 7 1.7864 -3.7527 12.6498 19 14 -0.9193 -4.0784 13.1486 20 1 -1.1998 -5.5363 13.1814 21 1 -0.6751 -3.5901 14.5296 22 1 -2.0846 -3.3631 12.5694 23 6 3.3303 -1.8206 8.2647 24 6 4.5810 -1.6335 7.4017 25 8 4.1907 -1.2255 6.0878 26 6 2.7674 -0.2560 3.8949 27 6 2.4265 0.2376 2.6495 28 1 -0.3633 0.6380 0.8056 29 1 -0.3632 0.3787 -0.9554 30 1 -0.3632 -1.0166 0.1497 31 1 2.2910 -2.6651 0.9366 32 1 2.9059 -3.5436 3.1532 33 1 1.5210 -1.3996 6.3451 34 1 1.4195 -3.0939 5.8063 35 1 0.5809 -2.1885 8.3917 36 1 0.7332 -3.9343 8.0793 37 1 2.3443 -4.1293 9.9540 38 1 2.1921 -2.3836 10.2665 39 1 1.8822 -3.9140 13.6015 40 1 2.8129 -0.8667 8.3675 41 1 3.6187 -2.1862 9.2502 42 1 5.1270 -2.5750 7.3433 43 1 5.2186 -0.8692 7.8459 44 1 2.8987 0.4204 4.7265 45 1 2.2917 1.2998 2.5080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599518945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -106.306893 kcal Electronic energy + Delta-G solvation = -26768.316521 eV Core-core repulsion = 22877.257042 eV Total energy + Delta-G solvation = -3891.059479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.24374 -39.80182 -38.12801 -37.35868 -36.96531 -35.05242 -34.10135 -32.07959 -31.80683 -30.89136 -30.20984 -28.23098 -26.07099 -25.16330 -23.94827 -23.53350 -21.96796 -21.16144 -20.01841 -18.87589 -18.68040 -17.58118 -17.44123 -17.12265 -16.90971 -16.60534 -16.48153 -16.17940 -15.91272 -15.64189 -15.48406 -15.08799 -14.76183 -14.45528 -14.34111 -14.22058 -14.05741 -13.91991 -13.81472 -13.31147 -13.16096 -13.12870 -13.02879 -12.89725 -12.69160 -12.54519 -12.43752 -12.23142 -12.04192 -11.98590 -11.67512 -11.59489 -11.34514 -11.26359 -10.82718 -10.56979 -10.13975 -10.04171 -9.37494 -8.22919 -6.33942 -0.85173 -0.26442 0.29921 1.39524 1.40377 1.51202 1.92221 2.29941 2.38487 2.65611 2.86841 3.05092 3.10947 3.20162 3.64149 3.75500 3.84391 3.94485 4.00493 4.07480 4.13462 4.14589 4.22150 4.30333 4.35856 4.46154 4.52111 4.55142 4.63101 4.67985 4.73804 4.84970 4.89896 4.96982 4.99205 4.99443 5.06339 5.11561 5.40128 5.41979 5.58348 5.72587 5.80624 5.93775 6.02577 6.12143 6.24799 6.81924 7.35248 8.88846 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.002051 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.224009 B =13647.801872 C =14320.692640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.509 3.491 3 O -0.978 6.978 4 O -0.974 6.974 5 C -0.662 4.662 6 C -0.030 4.030 7 C -0.130 4.130 8 C -0.037 4.037 9 C 0.131 3.869 10 H 0.086 0.914 11 C 0.034 3.966 12 N -0.543 5.543 13 C 0.078 3.922 14 C 0.031 3.969 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.264 1.264 23 C 0.016 3.984 24 C 0.073 3.927 25 O -0.388 6.388 26 C -0.126 4.126 27 C -0.035 4.035 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.020 0.980 36 H 0.069 0.931 37 H -0.004 1.004 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.029 0.971 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.701 6.650 -25.600 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.692 3.308 3 O -0.975 6.975 4 O -0.971 6.971 5 C -0.748 4.748 6 C -0.049 4.049 7 C -0.149 4.149 8 C -0.038 4.038 9 C 0.073 3.927 10 H 0.104 0.896 11 C -0.095 4.095 12 N -0.268 5.268 13 C -0.049 4.049 14 C -0.007 4.007 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.113 4.113 24 C -0.004 4.004 25 O -0.307 6.307 26 C -0.145 4.145 27 C -0.053 4.053 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.172 0.828 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.015 0.985 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.149 0.851 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.692 6.612 -26.201 27.031 hybrid contribution -1.289 0.064 2.206 2.556 sum -1.981 6.676 -23.995 24.985 Atomic orbital electron populations 1.30042 1.19555 1.14353 1.14005 1.04787 0.79909 0.73026 0.73049 1.93539 1.79707 1.38006 1.86268 1.93538 1.79647 1.62230 1.61717 1.30728 1.18706 1.03151 1.22199 1.21188 0.92289 0.93558 0.97835 1.21361 1.00574 1.01091 0.91874 1.19976 0.95484 0.94618 0.93700 1.21011 0.90176 0.92819 0.88655 0.89604 1.22745 0.97055 0.99916 0.89740 1.62317 1.17581 1.44202 1.02727 1.22026 0.90070 0.99008 0.93765 1.19047 0.95705 0.95388 0.90519 1.21592 0.94079 1.48837 0.93885 0.92251 1.25927 0.99136 0.94933 0.99537 1.70084 1.24137 1.50414 1.12285 0.85451 0.79274 0.78707 0.77631 1.19717 1.20768 1.18843 1.22831 0.95229 0.93775 0.99424 1.22758 0.94599 1.01821 0.81183 1.87934 1.66229 1.46947 1.29605 1.21247 0.99784 0.95335 0.98172 1.21137 0.92701 1.00342 0.91142 0.83095 0.82771 0.82751 0.81853 0.82815 0.94681 0.88527 0.96198 0.91264 0.98545 0.98015 0.92705 0.95239 0.90276 0.91673 0.86262 0.85077 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.69 10.80 113.37 1.22 -0.47 16 2 S 2.51 32.54 5.80 -56.49 -0.33 32.21 16 3 O -0.98 -19.93 17.13 -127.65 -2.19 -22.11 16 4 O -0.97 -18.90 17.13 -127.65 -2.19 -21.09 16 5 C -0.66 -10.62 5.66 22.27 0.13 -10.50 16 6 C -0.03 -0.47 9.47 22.27 0.21 -0.26 16 7 C -0.13 -2.28 9.68 22.27 0.22 -2.06 16 8 C -0.04 -0.80 5.01 -19.86 -0.10 -0.90 16 9 C 0.13 3.23 3.02 29.88 0.09 3.32 16 10 H 0.09 2.01 8.05 -2.39 -0.02 2.00 16 11 C 0.03 0.93 4.89 86.31 0.42 1.36 16 12 N -0.54 -18.96 4.88 -895.17 -4.36 -23.33 16 13 C 0.08 3.23 5.22 86.31 0.45 3.68 16 14 C 0.03 1.58 4.24 29.85 0.13 1.71 16 15 C -0.55 -30.47 9.11 25.60 0.23 -30.23 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 19 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 23 C 0.02 0.53 4.94 86.32 0.43 0.96 16 24 C 0.07 1.96 7.01 72.02 0.50 2.46 16 25 O -0.39 -10.60 9.63 -148.98 -1.43 -12.04 16 26 C -0.13 -2.71 9.35 22.27 0.21 -2.50 16 27 C -0.03 -0.63 9.47 22.27 0.21 -0.42 16 28 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.15 -0.09 8.14 -2.40 -0.02 -0.11 16 31 H 0.16 1.80 7.57 -2.91 -0.02 1.77 16 32 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.02 0.82 8.08 -2.38 -0.02 0.80 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.00 0.09 6.28 -2.39 -0.01 0.07 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 41 H 0.08 3.08 6.05 -2.39 -0.01 3.07 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.13 2.88 7.64 -2.91 -0.02 2.86 16 45 H 0.15 2.26 7.57 -2.91 -0.02 2.24 16 Total: -1.00 -77.41 378.78 -2.40 -79.81 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.98 Total: 9.48 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 4.81 Total: -33.22 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -4.08 Total: -78.51 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -5.81 Total: -55.24 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 32.54 SS G_CDS: -0.33 Total: 32.21 kcal Total: -77.41 -2.40 -79.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599518945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.493 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds