Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 110.54396 * 2 1 4 4 O 1.42104 * 110.54070 * 223.24627 * 2 1 3 5 5 C 1.76207 * 104.44940 * 111.62437 * 2 1 3 6 6 C 1.38234 * 119.99877 * 89.99650 * 5 2 1 7 7 C 1.38237 * 119.99665 * 179.97438 * 6 5 2 8 8 C 1.38231 * 120.00289 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00395 * 180.02562 * 8 7 6 10 10 H 1.09010 * 109.53970 * 339.88759 * 9 8 7 11 11 C 1.53097 * 109.51165 * 99.99512 * 9 8 7 12 12 N 1.47010 * 109.25821 * 176.78334 * 11 9 8 13 13 C 1.46906 * 110.99439 * 177.60862 * 12 11 9 14 14 C 1.52998 * 109.46836 * 170.00441 * 13 12 11 15 15 C 1.50696 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99983 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.47009 * 110.75480 * 301.38687 * 12 11 9 24 24 C 1.53090 * 109.26083 * 58.61866 * 23 12 11 25 25 O 1.43016 * 109.50822 * 219.78175 * 9 8 7 26 26 C 1.38243 * 119.99542 * 0.27312 * 8 7 6 27 27 C 1.38232 * 120.00230 * 359.51620 * 26 8 7 28 28 H 1.09001 * 109.47135 * 308.37449 * 1 2 3 29 29 H 1.08999 * 109.47300 * 68.37848 * 1 2 3 30 30 H 1.09002 * 109.47146 * 188.37399 * 1 2 3 31 31 H 1.08002 * 120.00052 * 359.97438 * 6 5 2 32 32 H 1.07998 * 119.99763 * 179.97438 * 7 6 5 33 33 H 1.09009 * 109.50196 * 56.84920 * 11 9 8 34 34 H 1.08997 * 109.50392 * 296.72531 * 11 9 8 35 35 H 1.08996 * 109.47057 * 50.00775 * 13 12 11 36 36 H 1.08997 * 109.47577 * 290.00132 * 13 12 11 37 37 H 1.09004 * 109.47223 * 59.99693 * 14 13 12 38 38 H 1.09010 * 109.47071 * 300.00045 * 14 13 12 39 39 H 0.97000 * 119.99462 * 359.97438 * 18 17 15 40 40 H 1.09006 * 109.50494 * 178.55301 * 23 12 11 41 41 H 1.08999 * 109.50391 * 298.67965 * 23 12 11 42 42 H 1.08997 * 109.51299 * 183.21211 * 24 23 12 43 43 H 1.09008 * 109.54317 * 63.10327 * 24 23 12 44 44 H 1.08003 * 119.99526 * 179.73214 * 26 8 7 45 45 H 1.07998 * 119.99848 * 180.27744 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4260 -1.9884 1.7673 7 6 2.7715 -2.4816 3.0116 8 6 2.9450 -1.6153 4.0747 9 6 3.3222 -2.1529 5.4310 10 1 3.0710 -3.2122 5.4861 11 6 4.8262 -1.9720 5.6526 12 7 5.1751 -2.4271 7.0063 13 6 6.6217 -2.3232 7.2400 14 6 6.9174 -2.5637 8.7218 15 6 8.4012 -2.4564 8.9617 16 1 9.0669 -2.2389 8.1396 17 6 8.9092 -2.6370 10.2308 18 7 8.0987 -2.9023 11.2319 19 14 10.7486 -2.5047 10.5281 20 1 11.3750 -3.8401 10.3563 21 1 11.3402 -1.5516 9.5550 22 1 10.9930 -2.0174 11.9094 23 6 4.4221 -1.6736 8.0194 24 6 2.9222 -1.8575 7.7742 25 8 2.6071 -1.4393 6.4433 26 6 2.7676 -0.2562 3.8947 27 6 2.4264 0.2375 2.6495 28 1 -0.3633 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3633 -1.0167 0.1497 31 1 2.2908 -2.6652 0.9365 32 1 2.9058 -3.5438 3.1531 33 1 5.0860 -0.9189 5.5444 34 1 5.3757 -2.5604 4.9178 35 1 6.9646 -1.3277 6.9580 36 1 7.1414 -3.0701 6.6400 37 1 6.5743 -3.5591 9.0038 38 1 6.3977 -1.8166 9.3219 39 1 7.1435 -2.9706 11.0775 40 1 4.6767 -2.0443 9.0124 41 1 4.6755 -0.6158 7.9490 42 1 2.3601 -1.2551 8.4877 43 1 2.6586 -2.9081 7.8976 44 1 2.8990 0.4203 4.7264 45 1 2.2922 1.2997 2.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599518946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -84.111290 kcal Electronic energy + Delta-G solvation = -26794.514835 eV Core-core repulsion = 22904.417830 eV Total energy + Delta-G solvation = -3890.097005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31257 -38.90113 -37.47447 -36.31403 -36.06708 -33.41608 -33.14607 -31.39224 -30.14483 -29.84111 -29.72493 -26.61786 -24.55643 -23.66188 -23.18026 -22.46976 -20.87277 -19.91101 -19.42221 -18.21803 -17.04215 -16.64026 -16.63388 -16.48809 -16.05881 -15.65979 -14.97642 -14.90172 -14.80931 -14.57596 -14.15123 -13.88839 -13.79675 -13.74100 -13.67879 -13.64316 -13.16895 -12.89422 -12.45323 -12.35355 -12.33655 -12.20399 -11.72045 -11.56808 -11.53787 -11.39847 -11.32051 -10.95171 -10.88719 -10.60385 -10.26727 -10.14619 -9.91748 -9.76509 -9.35339 -9.27711 -8.65380 -8.37957 -8.02812 -6.42550 -4.11809 -0.35708 0.44096 0.99317 2.46412 3.02190 3.40701 3.43953 3.51825 3.59713 3.61312 3.70537 4.07631 4.28836 4.33666 4.50534 4.53523 4.57371 4.62531 4.84565 4.99046 5.06183 5.11944 5.13999 5.20119 5.32466 5.35636 5.37228 5.41323 5.56726 5.61584 5.74178 5.77118 5.85597 5.92000 6.05891 6.13513 6.19504 6.22568 6.49396 6.65035 7.03517 7.09287 7.24386 7.42323 7.52847 8.15214 8.39543 8.81948 9.60109 10.98424 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.002038 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.828202 B =13733.971350 C =14351.916685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.501 3.499 3 O -0.938 6.938 4 O -0.938 6.938 5 C -0.662 4.662 6 C -0.026 4.026 7 C -0.128 4.128 8 C -0.020 4.020 9 C 0.127 3.873 10 H 0.080 0.920 11 C 0.029 3.971 12 N -0.538 5.538 13 C 0.069 3.931 14 C 0.009 3.991 15 C -0.604 4.604 16 H 0.049 0.951 17 C 0.016 3.984 18 N -0.911 5.911 19 Si 1.072 2.928 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.013 3.987 24 C 0.066 3.934 25 O -0.381 6.381 26 C -0.112 4.112 27 C -0.027 4.027 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.268 0.732 40 H 0.100 0.900 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.137 0.863 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.807 4.226 -20.106 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.681 3.319 3 O -0.935 6.935 4 O -0.936 6.936 5 C -0.749 4.749 6 C -0.044 4.044 7 C -0.147 4.147 8 C -0.021 4.021 9 C 0.069 3.931 10 H 0.098 0.902 11 C -0.099 4.099 12 N -0.263 5.263 13 C -0.057 4.057 14 C -0.028 4.028 15 C -0.642 4.642 16 H 0.067 0.933 17 C -0.188 4.188 18 N -0.547 5.547 19 Si 0.900 3.100 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.209 1.209 23 C -0.115 4.115 24 C -0.011 4.011 25 O -0.300 6.300 26 C -0.131 4.131 27 C -0.046 4.046 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.057 0.943 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.155 0.845 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.332 4.039 -19.572 27.119 hybrid contribution -1.128 0.434 -0.390 1.270 sum -19.461 4.473 -19.963 28.235 Atomic orbital electron populations 1.30226 1.25781 1.12143 1.11847 1.05104 0.77812 0.74634 0.74345 1.93593 1.77278 1.36550 1.86101 1.93589 1.77302 1.61649 1.61032 1.30481 1.19472 1.03066 1.21886 1.20874 0.92943 0.93159 0.97461 1.21133 1.00891 1.00261 0.92391 1.20008 0.93914 0.94113 0.94074 1.21009 0.91388 0.95912 0.84767 0.90187 1.22693 0.94590 0.99602 0.93062 1.62380 1.08777 1.54566 1.00619 1.22222 0.83616 0.98954 1.00900 1.19359 0.97380 0.96522 0.89567 1.22005 0.92034 1.53452 0.96748 0.93304 1.25855 1.06880 0.93691 0.92371 1.70765 1.05507 1.45132 1.33329 0.83498 0.74023 0.76633 0.75817 1.21366 1.21506 1.20948 1.22865 0.93365 0.96869 0.98371 1.22763 0.95063 1.00454 0.82820 1.87931 1.65038 1.62071 1.14984 1.21192 0.99255 0.95271 0.97408 1.20955 0.92799 0.99436 0.91365 0.84917 0.85039 0.84935 0.83907 0.84628 0.94051 0.89798 0.95746 0.91463 0.96544 0.97103 0.92115 0.88160 0.94263 0.88310 0.92192 0.84492 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.91 10.79 101.05 1.09 -0.82 16 2 S 2.50 18.11 5.80 -107.50 -0.62 17.49 16 3 O -0.94 -9.94 17.13 -57.54 -0.99 -10.93 16 4 O -0.94 -9.71 17.13 -57.54 -0.99 -10.70 16 5 C -0.66 -5.78 5.66 -39.58 -0.22 -6.00 16 6 C -0.03 -0.22 9.47 -39.58 -0.37 -0.60 16 7 C -0.13 -1.22 9.67 -39.58 -0.38 -1.60 16 8 C -0.02 -0.23 4.98 -104.63 -0.52 -0.75 16 9 C 0.13 1.61 3.01 -27.84 -0.08 1.53 16 10 H 0.08 0.97 8.01 -51.92 -0.42 0.55 16 11 C 0.03 0.43 4.89 -3.71 -0.02 0.41 16 12 N -0.54 -9.46 4.88 -234.31 -1.14 -10.60 16 13 C 0.07 1.45 5.22 -3.82 -0.02 1.43 16 14 C 0.01 0.22 3.55 -27.89 -0.10 0.12 16 15 C -0.60 -17.08 9.11 -34.44 -0.31 -17.40 16 16 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 18 N -0.91 -27.61 13.65 55.43 0.76 -26.85 16 19 Si 1.07 25.24 29.90 -169.99 -5.08 20.16 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.01 0.22 4.94 -3.72 -0.02 0.20 16 24 C 0.07 0.87 7.01 37.20 0.26 1.13 16 25 O -0.38 -5.16 9.78 -35.23 -0.34 -5.51 16 26 C -0.11 -1.22 9.36 -39.58 -0.37 -1.59 16 27 C -0.03 -0.25 9.47 -39.59 -0.37 -0.63 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.13 0.21 8.14 -51.92 -0.42 -0.22 16 31 H 0.14 0.94 7.57 -52.49 -0.40 0.55 16 32 H 0.14 1.03 8.04 -52.49 -0.42 0.61 16 33 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.02 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 38 H 0.01 0.28 6.14 -51.92 -0.32 -0.04 16 39 H 0.27 8.06 7.22 -40.82 -0.29 7.76 16 40 H 0.10 1.80 6.05 -51.93 -0.31 1.49 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 44 H 0.14 1.48 7.77 -52.48 -0.41 1.07 16 45 H 0.14 1.08 7.57 -52.49 -0.40 0.68 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -36.46 377.65 -11.07 -47.53 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.81 Total: -2.09 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -1.55 Total: -24.20 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.39 Total: -37.45 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -2.32 Total: -27.13 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Atomic # 16 Polarization: 18.11 SS G_CDS: -0.62 Total: 17.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.46 -11.07 -47.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599518946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.582 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds