Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 110.54396 * 2 1 4 4 O 1.42104 * 110.54070 * 223.24627 * 2 1 3 5 5 C 1.76207 * 104.44940 * 111.62437 * 2 1 3 6 6 C 1.38234 * 119.99877 * 89.99650 * 5 2 1 7 7 C 1.38237 * 119.99665 * 179.97438 * 6 5 2 8 8 C 1.38231 * 120.00289 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00395 * 180.02562 * 8 7 6 10 10 H 1.09010 * 109.53970 * 339.88759 * 9 8 7 11 11 C 1.53097 * 109.51165 * 99.99512 * 9 8 7 12 12 N 1.47010 * 109.25821 * 176.78334 * 11 9 8 13 13 C 1.46906 * 110.99439 * 177.60862 * 12 11 9 14 14 C 1.52998 * 109.46836 * 170.00441 * 13 12 11 15 15 C 1.50696 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99983 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.47009 * 110.75480 * 301.38687 * 12 11 9 24 24 C 1.53090 * 109.26083 * 58.61866 * 23 12 11 25 25 O 1.43016 * 109.50822 * 219.78175 * 9 8 7 26 26 C 1.38243 * 119.99542 * 0.27312 * 8 7 6 27 27 C 1.38232 * 120.00230 * 359.51620 * 26 8 7 28 28 H 1.09001 * 109.47135 * 308.37449 * 1 2 3 29 29 H 1.08999 * 109.47300 * 68.37848 * 1 2 3 30 30 H 1.09002 * 109.47146 * 188.37399 * 1 2 3 31 31 H 1.08002 * 120.00052 * 359.97438 * 6 5 2 32 32 H 1.07998 * 119.99763 * 179.97438 * 7 6 5 33 33 H 1.09009 * 109.50196 * 56.84920 * 11 9 8 34 34 H 1.08997 * 109.50392 * 296.72531 * 11 9 8 35 35 H 1.08996 * 109.47057 * 50.00775 * 13 12 11 36 36 H 1.08997 * 109.47577 * 290.00132 * 13 12 11 37 37 H 1.09004 * 109.47223 * 59.99693 * 14 13 12 38 38 H 1.09010 * 109.47071 * 300.00045 * 14 13 12 39 39 H 0.97000 * 119.99462 * 359.97438 * 18 17 15 40 40 H 1.09006 * 109.50494 * 178.55301 * 23 12 11 41 41 H 1.08999 * 109.50391 * 298.67965 * 23 12 11 42 42 H 1.08997 * 109.51299 * 183.21211 * 24 23 12 43 43 H 1.09008 * 109.54317 * 63.10327 * 24 23 12 44 44 H 1.08003 * 119.99526 * 179.73214 * 26 8 7 45 45 H 1.07998 * 119.99848 * 180.27744 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4260 -1.9884 1.7673 7 6 2.7715 -2.4816 3.0116 8 6 2.9450 -1.6153 4.0747 9 6 3.3222 -2.1529 5.4310 10 1 3.0710 -3.2122 5.4861 11 6 4.8262 -1.9720 5.6526 12 7 5.1751 -2.4271 7.0063 13 6 6.6217 -2.3232 7.2400 14 6 6.9174 -2.5637 8.7218 15 6 8.4012 -2.4564 8.9617 16 1 9.0669 -2.2389 8.1396 17 6 8.9092 -2.6370 10.2308 18 7 8.0987 -2.9023 11.2319 19 14 10.7486 -2.5047 10.5281 20 1 11.3750 -3.8401 10.3563 21 1 11.3402 -1.5516 9.5550 22 1 10.9930 -2.0174 11.9094 23 6 4.4221 -1.6736 8.0194 24 6 2.9222 -1.8575 7.7742 25 8 2.6071 -1.4393 6.4433 26 6 2.7676 -0.2562 3.8947 27 6 2.4264 0.2375 2.6495 28 1 -0.3633 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3633 -1.0167 0.1497 31 1 2.2908 -2.6652 0.9365 32 1 2.9058 -3.5438 3.1531 33 1 5.0860 -0.9189 5.5444 34 1 5.3757 -2.5604 4.9178 35 1 6.9646 -1.3277 6.9580 36 1 7.1414 -3.0701 6.6400 37 1 6.5743 -3.5591 9.0038 38 1 6.3977 -1.8166 9.3219 39 1 7.1435 -2.9706 11.0775 40 1 4.6767 -2.0443 9.0124 41 1 4.6755 -0.6158 7.9490 42 1 2.3601 -1.2551 8.4877 43 1 2.6586 -2.9081 7.8976 44 1 2.8990 0.4203 4.7264 45 1 2.2922 1.2997 2.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599518946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -111.081780 kcal Electronic energy + Delta-G solvation = -26795.684364 eV Core-core repulsion = 22904.417830 eV Total energy + Delta-G solvation = -3891.266533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.31331 -39.86565 -38.14617 -37.52383 -36.98173 -35.36600 -34.15254 -32.11163 -31.65361 -30.95688 -30.22498 -28.05793 -25.98128 -25.18105 -24.04923 -23.68439 -22.17709 -21.30485 -20.04165 -19.04517 -18.86930 -17.72737 -17.55166 -17.13866 -16.99244 -16.54908 -16.31750 -16.13542 -15.74518 -15.65406 -15.59667 -15.38088 -14.90772 -14.56580 -14.49184 -14.15972 -14.08929 -13.92612 -13.82132 -13.59348 -13.18826 -13.14541 -13.04636 -12.88262 -12.74714 -12.60402 -12.26084 -12.19686 -12.07413 -11.96652 -11.76889 -11.68989 -11.49249 -10.88959 -10.79127 -10.57507 -10.20514 -10.07533 -9.50850 -8.73583 -6.44128 -0.86823 -0.30417 0.26517 1.50400 1.59242 1.77127 1.90370 2.24895 2.51285 2.61017 2.77052 3.03719 3.11667 3.18059 3.58841 3.67684 3.79149 3.87446 3.93910 3.98761 4.05209 4.12777 4.16650 4.21536 4.31482 4.32899 4.42368 4.47702 4.50771 4.63800 4.66163 4.71519 4.78074 4.82517 4.94165 4.98237 5.02827 5.07192 5.15418 5.33075 5.37750 5.71580 5.77162 5.89497 6.00622 6.03653 6.13197 6.53316 7.36962 8.67802 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.002038 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.828202 B =13733.971350 C =14351.916685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.507 3.493 3 O -0.979 6.979 4 O -0.975 6.975 5 C -0.661 4.661 6 C -0.030 4.030 7 C -0.129 4.129 8 C -0.039 4.039 9 C 0.134 3.866 10 H 0.090 0.910 11 C 0.030 3.970 12 N -0.541 5.541 13 C 0.084 3.916 14 C 0.016 3.984 15 C -0.622 4.622 16 H 0.048 0.952 17 C -0.036 4.036 18 N -0.934 5.934 19 Si 1.120 2.880 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.281 1.281 23 C 0.014 3.986 24 C 0.074 3.926 25 O -0.384 6.384 26 C -0.126 4.126 27 C -0.035 4.035 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.032 0.968 34 H 0.092 0.908 35 H 0.017 0.983 36 H 0.067 0.933 37 H -0.005 1.005 38 H -0.001 1.001 39 H 0.257 0.743 40 H 0.078 0.922 41 H 0.028 0.972 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.301 4.089 -21.861 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.690 3.310 3 O -0.976 6.976 4 O -0.972 6.972 5 C -0.746 4.746 6 C -0.049 4.049 7 C -0.148 4.148 8 C -0.039 4.039 9 C 0.076 3.924 10 H 0.107 0.893 11 C -0.098 4.098 12 N -0.266 5.266 13 C -0.043 4.043 14 C -0.021 4.021 15 C -0.661 4.661 16 H 0.067 0.933 17 C -0.234 4.234 18 N -0.571 5.571 19 Si 0.941 3.059 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.206 1.206 23 C -0.115 4.115 24 C -0.003 4.003 25 O -0.303 6.303 26 C -0.145 4.145 27 C -0.054 4.054 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.174 0.826 31 H 0.182 0.818 32 H 0.172 0.828 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.013 0.987 38 H 0.018 0.982 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.141 0.859 43 H 0.086 0.914 44 H 0.148 0.852 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.805 3.897 -21.337 29.372 hybrid contribution -0.791 0.498 0.073 0.938 sum -20.597 4.395 -21.264 29.928 Atomic orbital electron populations 1.30027 1.19163 1.14453 1.14073 1.04869 0.80105 0.73011 0.73031 1.93541 1.79810 1.38031 1.86246 1.93541 1.79749 1.62229 1.61679 1.30750 1.18554 1.03134 1.22201 1.21201 0.92285 0.93578 0.97808 1.21380 1.00174 1.01074 0.92150 1.19952 0.95754 0.94532 0.93682 1.20987 0.89445 0.96500 0.85434 0.89265 1.22776 0.96704 0.99039 0.91276 1.62335 1.06628 1.55207 1.02460 1.21890 0.86204 0.98392 0.97850 1.19206 0.95820 0.94795 0.92271 1.22434 0.93631 1.53051 0.96956 0.93335 1.27419 1.10971 0.92653 0.92361 1.70891 1.05138 1.46989 1.34064 0.82893 0.68989 0.77801 0.76200 1.19638 1.19627 1.20649 1.22867 0.95742 0.95801 0.97063 1.22766 0.92531 1.01551 0.83419 1.87943 1.64898 1.62429 1.15066 1.21244 1.00033 0.95290 0.97944 1.21135 0.92770 1.00362 0.91088 0.82953 0.82740 0.82611 0.81785 0.82775 0.94968 0.88996 0.96467 0.91481 0.98678 0.98244 0.93397 0.90356 0.95369 0.85948 0.91383 0.85200 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.10 10.79 113.37 1.22 0.12 16 2 S 2.51 32.16 5.80 -56.49 -0.33 31.83 16 3 O -0.98 -20.12 17.13 -127.65 -2.19 -22.31 16 4 O -0.97 -19.01 17.13 -127.65 -2.19 -21.19 16 5 C -0.66 -10.51 5.66 22.27 0.13 -10.38 16 6 C -0.03 -0.47 9.47 22.27 0.21 -0.26 16 7 C -0.13 -2.23 9.67 22.27 0.22 -2.02 16 8 C -0.04 -0.83 4.98 -19.87 -0.10 -0.93 16 9 C 0.13 3.27 3.01 29.88 0.09 3.36 16 10 H 0.09 2.02 8.01 -2.38 -0.02 2.00 16 11 C 0.03 0.89 4.89 86.31 0.42 1.31 16 12 N -0.54 -19.30 4.88 -895.24 -4.37 -23.67 16 13 C 0.08 3.60 5.22 86.30 0.45 4.05 16 14 C 0.02 0.85 3.55 29.85 0.11 0.96 16 15 C -0.62 -35.87 9.11 25.60 0.23 -35.64 16 16 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 17 C -0.04 -2.11 5.46 84.65 0.46 -1.64 16 18 N -0.93 -57.73 13.65 21.45 0.29 -57.43 16 19 Si 1.12 50.49 29.90 68.60 2.05 52.55 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.01 0.46 4.94 86.31 0.43 0.88 16 24 C 0.07 1.89 7.01 72.01 0.50 2.40 16 25 O -0.38 -10.05 9.78 -148.98 -1.46 -11.50 16 26 C -0.13 -2.69 9.36 22.27 0.21 -2.48 16 27 C -0.03 -0.63 9.47 22.27 0.21 -0.42 16 28 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.16 1.77 7.57 -2.91 -0.02 1.74 16 32 H 0.15 1.99 8.04 -2.91 -0.02 1.96 16 33 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 37 H -0.01 -0.29 8.01 -2.38 -0.02 -0.30 16 38 H 0.00 -0.03 6.14 -2.38 -0.01 -0.05 16 39 H 0.26 15.99 7.22 -92.71 -0.67 15.32 16 40 H 0.08 2.97 6.05 -2.38 -0.01 2.95 16 41 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.13 2.84 7.77 -2.91 -0.02 2.82 16 45 H 0.15 2.25 7.57 -2.91 -0.02 2.23 16 Total: -1.00 -80.44 377.65 -2.31 -82.75 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.08 Total: 9.65 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.79 Total: -40.67 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -4.07 Total: -81.10 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -5.83 Total: -55.00 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.55 kcal Atomic # 16 Polarization: 32.16 SS G_CDS: -0.33 Total: 31.83 kcal Total: -80.44 -2.31 -82.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599518946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.332 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds