Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99941 * 2 1 4 4 H 1.09000 * 110.01604 * 28.60576 * 3 2 1 5 5 C 1.54266 * 110.07438 * 267.19009 * 3 2 1 6 6 C 1.54882 * 104.19877 * 264.30568 * 5 3 2 7 7 C 1.54895 * 102.74760 * 322.05789 * 6 5 3 8 8 C 1.53875 * 110.03373 * 149.99886 * 3 2 1 9 9 H 1.08999 * 110.02553 * 0.02562 * 8 3 2 10 10 C 1.52999 * 110.03316 * 238.61997 * 8 3 2 11 11 N 1.46499 * 109.46866 * 174.99726 * 10 8 3 12 12 S 1.65605 * 119.99939 * 165.86120 * 11 10 8 13 13 O 1.42098 * 106.40361 * 309.21440 * 12 11 10 14 14 O 1.42094 * 106.40367 * 176.29040 * 12 11 10 15 15 C 1.76205 * 107.21432 * 62.74993 * 12 11 10 16 16 C 1.37632 * 120.12612 * 245.84731 * 15 12 11 17 17 C 1.38621 * 120.24722 * 180.02562 * 16 15 12 18 18 C 1.38649 * 120.49800 * 0.02562 * 17 16 15 19 19 C 1.37594 * 120.25282 * 0.02562 * 18 17 16 20 20 C 1.40702 * 120.12322 * 65.87475 * 15 12 11 21 21 C 1.41388 * 120.24578 * 359.97438 * 20 15 12 22 22 H 1.07998 * 120.00804 * 331.62967 * 21 20 15 23 23 C 1.39949 * 119.99585 * 151.62899 * 21 20 15 24 24 N 1.30821 * 120.00274 * 348.41090 * 23 21 20 25 25 Si 1.86804 * 119.99941 * 168.41574 * 23 21 20 26 26 H 1.48500 * 109.46995 * 89.99644 * 25 23 21 27 27 H 1.48494 * 109.46924 * 210.00213 * 25 23 21 28 28 H 1.48504 * 109.46995 * 329.99848 * 25 23 21 29 29 H 1.08999 * 109.46699 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46947 * 300.00168 * 1 2 3 31 31 H 1.09000 * 109.46909 * 60.00186 * 1 2 3 32 32 H 1.09004 * 110.48639 * 22.98629 * 5 3 2 33 33 H 1.09006 * 110.48574 * 145.48727 * 5 3 2 34 34 H 1.09001 * 110.76142 * 80.36750 * 6 5 3 35 35 H 1.09001 * 110.75809 * 203.55651 * 6 5 3 36 36 H 1.09003 * 110.48174 * 279.26538 * 7 6 5 37 37 H 1.08990 * 110.48720 * 156.62036 * 7 6 5 38 38 H 1.08996 * 109.47035 * 55.00012 * 10 8 3 39 39 H 1.09000 * 109.46866 * 294.99639 * 10 8 3 40 40 H 0.97003 * 119.99956 * 345.87130 * 11 10 8 41 41 H 1.07996 * 119.88229 * 0.05199 * 16 15 12 42 42 H 1.07999 * 119.75063 * 180.02562 * 17 16 15 43 43 H 1.08002 * 119.87815 * 180.27498 * 18 17 16 44 44 H 1.08005 * 120.12971 * 180.02562 * 19 18 17 45 45 H 0.97001 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2905 1.7603 -1.4472 6 6 3.7774 1.3942 -1.6793 7 6 4.4265 1.7167 -0.3104 8 6 3.3684 1.2778 0.7228 9 1 3.5843 0.2685 1.0732 10 6 3.3536 2.2507 1.9036 11 7 4.6063 2.1279 2.6532 12 16 5.0245 3.2848 3.7619 13 8 4.9049 4.5366 3.1003 14 8 6.2285 2.8397 4.3714 15 6 3.7932 3.2685 5.0222 16 6 2.9696 4.3572 5.1974 17 6 2.0004 4.3473 6.1884 18 6 1.8494 3.2437 7.0139 19 6 2.6624 2.1446 6.8576 20 6 3.6487 2.1427 5.8538 21 6 4.4892 1.0187 5.6831 22 1 4.9020 0.7956 4.7104 23 6 4.7863 0.1950 6.7748 24 7 4.4811 0.5804 7.9872 25 14 5.6189 -1.4546 6.5010 26 1 7.0927 -1.2793 6.5493 27 1 5.1981 -2.4037 7.5627 28 1 5.2277 -1.9921 5.1731 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6513 1.2218 -2.1469 33 1 2.1404 2.8356 -1.5450 34 1 3.8822 0.3355 -1.9165 35 1 4.2082 2.0099 -2.4689 36 1 4.6237 2.7853 -0.2240 37 1 5.3461 1.1464 -0.1804 38 1 2.5142 2.0153 2.5578 39 1 3.2504 3.2705 1.5328 40 1 5.1908 1.3691 2.4999 41 1 3.0784 5.2222 4.5600 42 1 1.3582 5.2058 6.3185 43 1 1.0881 3.2449 7.7800 44 1 2.5427 1.2858 7.5015 45 1 4.6867 0.0093 8.7438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601387486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -119.854361 kcal Electronic energy + Delta-G solvation = -28416.869038 eV Core-core repulsion = 24525.222098 eV Total energy + Delta-G solvation = -3891.646941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.39764 -37.58857 -36.44981 -36.15145 -34.81581 -34.20026 -33.84811 -30.23642 -29.57186 -29.27087 -28.25639 -26.48224 -25.54240 -23.75452 -21.65994 -21.13524 -20.76950 -20.04467 -18.55392 -17.70410 -17.06610 -16.80681 -16.14020 -15.63375 -15.41880 -15.28121 -15.13665 -14.53020 -14.28585 -14.17752 -13.97535 -13.57737 -13.26065 -13.15268 -12.75591 -12.57421 -12.08368 -11.88595 -11.78290 -11.52032 -11.46130 -11.26192 -11.18069 -11.15523 -11.10232 -11.04508 -10.99328 -10.80428 -10.68136 -10.59176 -10.55463 -10.50070 -9.90567 -9.60250 -9.43566 -9.40907 -8.74584 -8.03401 -7.60222 -7.02498 -4.75476 1.55028 2.34365 2.73882 2.97602 3.01565 3.12842 3.65000 3.78304 3.99652 4.41338 4.48932 4.53249 4.72628 4.85611 5.16071 5.17504 5.25901 5.29167 5.29326 5.41298 5.53242 5.56570 5.59820 5.66125 5.67549 5.74979 5.83555 5.93968 6.00100 6.04074 6.10445 6.18485 6.23932 6.31922 6.40592 6.49107 6.78156 6.95672 7.08997 7.19075 7.31071 7.48884 7.55874 7.68507 7.81084 7.89793 8.29352 8.50679 8.65384 9.90210 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.004444 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.131780 B = 6299.089533 C = 6786.672717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.088 3.912 4 H 0.068 0.932 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.097 4.097 9 H 0.095 0.905 10 C 0.133 3.867 11 N -1.120 6.120 12 S 2.700 3.300 13 O -0.999 6.999 14 O -0.964 6.964 15 C -0.776 4.776 16 C -0.004 4.004 17 C -0.251 4.251 18 C -0.077 4.077 19 C -0.158 4.158 20 C 0.186 3.814 21 C -0.443 4.443 22 H 0.087 0.913 23 C 0.080 3.920 24 N -0.777 5.777 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.255 1.255 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.411 0.589 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.125 0.875 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 -2.343 -13.184 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C 0.029 3.971 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.158 4.158 7 C -0.158 4.158 8 C -0.117 4.117 9 H 0.113 0.887 10 C 0.006 3.994 11 N -0.877 5.877 12 S 2.798 3.202 13 O -0.989 6.989 14 O -0.955 6.955 15 C -0.871 4.871 16 C -0.023 4.023 17 C -0.272 4.272 18 C -0.096 4.096 19 C -0.178 4.178 20 C 0.181 3.819 21 C -0.471 4.471 22 H 0.105 0.895 23 C -0.141 4.141 24 N -0.400 5.400 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.198 1.198 28 H -0.179 1.179 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.244 0.756 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.143 0.857 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.766 -1.876 -12.980 13.954 hybrid contribution -0.392 -1.013 0.498 1.195 sum -5.158 -2.889 -12.482 13.812 Atomic orbital electron populations 1.22781 0.81414 1.02566 0.99920 1.87946 1.19338 1.27736 1.94930 1.22785 0.94572 0.84608 0.95097 0.91359 1.22863 0.97650 1.01123 0.96693 1.22444 0.94749 1.01356 0.97241 1.22455 0.97776 1.01977 0.93555 1.22067 0.93641 1.01021 0.94933 0.88702 1.21207 0.86516 0.99247 0.92395 1.55627 1.31620 1.43109 1.57330 1.01068 0.74288 0.71921 0.72925 1.93441 1.87838 1.42171 1.75482 1.93546 1.44381 1.81432 1.76129 1.29855 1.26879 1.03830 1.26574 1.20250 0.92145 0.94819 0.95127 1.20481 1.04482 0.99677 1.02513 1.20896 0.97612 0.94194 0.96906 1.21519 0.96316 0.98638 1.01294 1.17001 0.88225 0.88640 0.87991 1.19849 1.23248 1.07129 0.96889 0.89458 1.25955 0.94088 0.99770 0.94275 1.69778 1.34453 1.36210 0.99543 0.86181 0.80429 0.79864 0.79779 1.18657 1.19815 1.17881 0.89852 0.93783 0.94355 0.91215 0.90790 0.91356 0.91662 0.90732 0.91164 0.91641 0.90815 0.75552 0.87470 0.88794 0.88866 0.85722 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.38 16 2 O -0.38 -4.76 10.25 -35.23 -0.36 -5.12 16 3 C 0.09 1.01 3.04 -25.61 -0.08 0.94 16 4 H 0.07 0.75 7.33 -51.93 -0.38 0.37 16 5 C -0.15 -1.43 6.57 -25.08 -0.16 -1.59 16 6 C -0.12 -1.18 6.91 -24.74 -0.17 -1.36 16 7 C -0.12 -1.36 6.19 -25.07 -0.16 -1.51 16 8 C -0.10 -1.22 2.78 -89.50 -0.25 -1.47 16 9 H 0.09 1.27 7.95 -51.93 -0.41 0.86 16 10 C 0.13 1.99 5.24 -4.04 -0.02 1.96 16 11 N -1.12 -19.23 4.97 -10.62 -0.05 -19.28 16 12 S 2.70 58.65 4.96 -107.50 -0.53 58.11 16 13 O -1.00 -22.48 16.53 -57.17 -0.94 -23.43 16 14 O -0.96 -23.95 16.49 -57.17 -0.94 -24.89 16 15 C -0.78 -18.48 5.90 -38.87 -0.23 -18.70 16 16 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 17 C -0.25 -5.47 10.05 -39.29 -0.39 -5.87 16 18 C -0.08 -1.73 10.02 -39.66 -0.40 -2.12 16 19 C -0.16 -3.90 8.66 -38.87 -0.34 -4.23 16 20 C 0.19 4.73 5.55 -106.82 -0.59 4.13 16 21 C -0.44 -11.09 7.63 -37.74 -0.29 -11.38 16 22 H 0.09 2.04 5.84 -52.49 -0.31 1.73 16 23 C 0.08 1.93 5.24 -17.34 -0.09 1.84 16 24 N -0.78 -19.12 10.86 55.55 0.60 -18.51 16 25 Si 0.91 18.07 29.58 -169.99 -5.03 13.04 16 26 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.87 7.76 -51.93 -0.40 0.47 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 40 H 0.41 6.33 8.50 -34.48 -0.29 6.04 16 41 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.13 3.10 6.22 -52.48 -0.33 2.78 16 45 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -30.74 375.30 -10.74 -41.47 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.68 Total: 11.39 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: -2.45 Total: -38.43 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.55 Total: -37.80 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.25 Total: -53.44 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 58.65 SS G_CDS: -0.53 Total: 58.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.74 -10.74 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601387486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.380 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds