Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99941 * 2 1 4 4 H 1.09000 * 110.01604 * 28.60576 * 3 2 1 5 5 C 1.54266 * 110.07438 * 267.19009 * 3 2 1 6 6 C 1.54882 * 104.19877 * 264.30568 * 5 3 2 7 7 C 1.54895 * 102.74760 * 322.05789 * 6 5 3 8 8 C 1.53875 * 110.03373 * 149.99886 * 3 2 1 9 9 H 1.08999 * 110.02553 * 0.02562 * 8 3 2 10 10 C 1.52999 * 110.03316 * 238.61997 * 8 3 2 11 11 N 1.46499 * 109.46866 * 174.99726 * 10 8 3 12 12 S 1.65605 * 119.99939 * 165.86120 * 11 10 8 13 13 O 1.42098 * 106.40361 * 309.21440 * 12 11 10 14 14 O 1.42094 * 106.40367 * 176.29040 * 12 11 10 15 15 C 1.76205 * 107.21432 * 62.74993 * 12 11 10 16 16 C 1.37632 * 120.12612 * 245.84731 * 15 12 11 17 17 C 1.38621 * 120.24722 * 180.02562 * 16 15 12 18 18 C 1.38649 * 120.49800 * 0.02562 * 17 16 15 19 19 C 1.37594 * 120.25282 * 0.02562 * 18 17 16 20 20 C 1.40702 * 120.12322 * 65.87475 * 15 12 11 21 21 C 1.41388 * 120.24578 * 359.97438 * 20 15 12 22 22 H 1.07998 * 120.00804 * 331.62967 * 21 20 15 23 23 C 1.39949 * 119.99585 * 151.62899 * 21 20 15 24 24 N 1.30821 * 120.00274 * 348.41090 * 23 21 20 25 25 Si 1.86804 * 119.99941 * 168.41574 * 23 21 20 26 26 H 1.48500 * 109.46995 * 89.99644 * 25 23 21 27 27 H 1.48494 * 109.46924 * 210.00213 * 25 23 21 28 28 H 1.48504 * 109.46995 * 329.99848 * 25 23 21 29 29 H 1.08999 * 109.46699 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46947 * 300.00168 * 1 2 3 31 31 H 1.09000 * 109.46909 * 60.00186 * 1 2 3 32 32 H 1.09004 * 110.48639 * 22.98629 * 5 3 2 33 33 H 1.09006 * 110.48574 * 145.48727 * 5 3 2 34 34 H 1.09001 * 110.76142 * 80.36750 * 6 5 3 35 35 H 1.09001 * 110.75809 * 203.55651 * 6 5 3 36 36 H 1.09003 * 110.48174 * 279.26538 * 7 6 5 37 37 H 1.08990 * 110.48720 * 156.62036 * 7 6 5 38 38 H 1.08996 * 109.47035 * 55.00012 * 10 8 3 39 39 H 1.09000 * 109.46866 * 294.99639 * 10 8 3 40 40 H 0.97003 * 119.99956 * 345.87130 * 11 10 8 41 41 H 1.07996 * 119.88229 * 0.05199 * 16 15 12 42 42 H 1.07999 * 119.75063 * 180.02562 * 17 16 15 43 43 H 1.08002 * 119.87815 * 180.27498 * 18 17 16 44 44 H 1.08005 * 120.12971 * 180.02562 * 19 18 17 45 45 H 0.97001 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2905 1.7603 -1.4472 6 6 3.7774 1.3942 -1.6793 7 6 4.4265 1.7167 -0.3104 8 6 3.3684 1.2778 0.7228 9 1 3.5843 0.2685 1.0732 10 6 3.3536 2.2507 1.9036 11 7 4.6063 2.1279 2.6532 12 16 5.0245 3.2848 3.7619 13 8 4.9049 4.5366 3.1003 14 8 6.2285 2.8397 4.3714 15 6 3.7932 3.2685 5.0222 16 6 2.9696 4.3572 5.1974 17 6 2.0004 4.3473 6.1884 18 6 1.8494 3.2437 7.0139 19 6 2.6624 2.1446 6.8576 20 6 3.6487 2.1427 5.8538 21 6 4.4892 1.0187 5.6831 22 1 4.9020 0.7956 4.7104 23 6 4.7863 0.1950 6.7748 24 7 4.4811 0.5804 7.9872 25 14 5.6189 -1.4546 6.5010 26 1 7.0927 -1.2793 6.5493 27 1 5.1981 -2.4037 7.5627 28 1 5.2277 -1.9921 5.1731 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6513 1.2218 -2.1469 33 1 2.1404 2.8356 -1.5450 34 1 3.8822 0.3355 -1.9165 35 1 4.2082 2.0099 -2.4689 36 1 4.6237 2.7853 -0.2240 37 1 5.3461 1.1464 -0.1804 38 1 2.5142 2.0153 2.5578 39 1 3.2504 3.2705 1.5328 40 1 5.1908 1.3691 2.4999 41 1 3.0784 5.2222 4.5600 42 1 1.3582 5.2058 6.3185 43 1 1.0881 3.2449 7.7800 44 1 2.5427 1.2858 7.5015 45 1 4.6867 0.0093 8.7438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601387486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -139.481540 kcal Electronic energy + Delta-G solvation = -28417.720137 eV Core-core repulsion = 24525.222098 eV Total energy + Delta-G solvation = -3892.498039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.31124 -39.37737 -38.03770 -37.37509 -36.65603 -35.70604 -35.31740 -32.03182 -31.35879 -30.35641 -29.09243 -27.38659 -27.27104 -24.87235 -23.44139 -22.93720 -21.59191 -21.08929 -20.14127 -19.50760 -18.49545 -18.10257 -17.68653 -17.18685 -16.76721 -16.46039 -16.12022 -16.05696 -15.72757 -15.43119 -15.09469 -14.93498 -14.85635 -14.50064 -14.47349 -13.72447 -13.49077 -13.36225 -13.22717 -12.99380 -12.94076 -12.85637 -12.78676 -12.66508 -12.51253 -12.38336 -12.15687 -12.12504 -11.91046 -11.84942 -11.65905 -11.51193 -11.44275 -11.19052 -11.12649 -10.45184 -10.22738 -9.83830 -9.43183 -8.79778 -6.61336 -0.15800 0.53311 0.97393 1.35841 1.47507 1.52123 2.15161 2.33133 2.63058 2.88340 2.99032 3.47612 3.58987 3.64091 3.84804 3.93025 4.25159 4.33071 4.36451 4.44629 4.47152 4.49623 4.51554 4.57636 4.62549 4.71203 4.73029 4.82911 4.90793 4.93531 4.98480 5.05235 5.05911 5.15137 5.17782 5.26213 5.30459 5.33826 5.52114 5.52356 5.70699 5.82749 6.00645 6.08202 6.21979 6.35768 6.47704 6.67518 6.83657 8.16091 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.004444 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.131780 B = 6299.089533 C = 6786.672717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.085 3.915 4 H 0.071 0.929 5 C -0.141 4.141 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.093 4.093 9 H 0.085 0.915 10 C 0.130 3.870 11 N -1.108 6.108 12 S 2.721 3.279 13 O -1.007 7.007 14 O -0.999 6.999 15 C -0.793 4.793 16 C -0.016 4.016 17 C -0.250 4.250 18 C -0.076 4.076 19 C -0.187 4.187 20 C 0.161 3.839 21 C -0.473 4.473 22 H 0.093 0.907 23 C 0.039 3.961 24 N -0.808 5.808 25 Si 0.974 3.026 26 H -0.266 1.266 27 H -0.259 1.259 28 H -0.245 1.245 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.420 0.580 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 -2.460 -14.704 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.026 3.974 4 H 0.089 0.911 5 C -0.178 4.178 6 C -0.153 4.153 7 C -0.160 4.160 8 C -0.113 4.113 9 H 0.103 0.897 10 C 0.004 3.996 11 N -0.868 5.868 12 S 2.817 3.183 13 O -0.997 6.997 14 O -0.990 6.990 15 C -0.887 4.887 16 C -0.036 4.036 17 C -0.270 4.270 18 C -0.095 4.095 19 C -0.207 4.207 20 C 0.157 3.843 21 C -0.502 4.502 22 H 0.111 0.889 23 C -0.179 4.179 24 N -0.432 5.432 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.183 1.183 28 H -0.168 1.168 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.255 0.745 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.562 -1.983 -14.487 15.644 hybrid contribution -0.242 -0.875 0.958 1.320 sum -5.804 -2.859 -13.530 14.997 Atomic orbital electron populations 1.22944 0.80046 1.03578 1.00630 1.87906 1.20928 1.28253 1.95122 1.22833 0.93807 0.84546 0.96203 0.91104 1.22853 0.97684 1.01881 0.95425 1.22429 0.94668 1.01606 0.96626 1.22477 0.97612 1.01752 0.94120 1.22020 0.95245 0.99649 0.94406 0.89700 1.21387 0.84897 1.00454 0.92865 1.55242 1.32663 1.42642 1.56253 1.00331 0.73198 0.72090 0.72686 1.93420 1.87797 1.43111 1.75407 1.93491 1.46169 1.82083 1.77238 1.30172 1.27281 1.03885 1.27342 1.20590 0.92263 0.95009 0.95741 1.20893 1.04314 1.00396 1.01431 1.21248 0.97424 0.93513 0.97273 1.21578 0.97546 0.99477 1.02049 1.17315 0.88786 0.89437 0.88769 1.20141 1.24243 1.08098 0.97673 0.88922 1.26798 0.94482 1.02801 0.93833 1.69816 1.35491 1.37571 1.00307 0.85312 0.78886 0.75976 0.80519 1.19082 1.18261 1.16822 0.88796 0.94024 0.92666 0.90404 0.89654 0.91491 0.90114 0.91063 0.90868 0.92548 0.90143 0.74453 0.85851 0.85443 0.86013 0.86825 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.85 113.37 1.23 1.66 16 2 O -0.40 -9.59 10.25 -148.98 -1.53 -11.12 16 3 C 0.08 1.83 3.04 31.32 0.10 1.93 16 4 H 0.07 1.47 7.33 -2.39 -0.02 1.45 16 5 C -0.14 -2.43 6.57 31.67 0.21 -2.22 16 6 C -0.12 -2.02 6.91 31.88 0.22 -1.80 16 7 C -0.12 -2.58 6.19 31.67 0.20 -2.39 16 8 C -0.09 -2.27 2.78 -10.07 -0.03 -2.30 16 9 H 0.08 2.24 7.95 -2.39 -0.02 2.22 16 10 C 0.13 3.82 5.24 86.38 0.45 4.27 16 11 N -1.11 -37.93 4.97 -187.50 -0.93 -38.86 16 12 S 2.72 118.62 4.96 -56.49 -0.28 118.34 16 13 O -1.01 -44.77 16.53 -128.00 -2.12 -46.89 16 14 O -1.00 -50.42 16.49 -128.00 -2.11 -52.53 16 15 C -0.79 -38.00 5.90 22.73 0.13 -37.87 16 16 C -0.02 -0.73 9.53 22.22 0.21 -0.52 16 17 C -0.25 -10.48 10.05 22.46 0.23 -10.25 16 18 C -0.08 -3.33 10.02 22.22 0.22 -3.11 16 19 C -0.19 -9.36 8.66 22.73 0.20 -9.16 16 20 C 0.16 8.36 5.55 -21.29 -0.12 8.24 16 21 C -0.47 -24.22 7.63 23.46 0.18 -24.04 16 22 H 0.09 4.43 5.84 -2.91 -0.02 4.41 16 23 C 0.04 1.89 5.24 85.26 0.45 2.34 16 24 N -0.81 -40.62 10.86 21.83 0.24 -40.38 16 25 Si 0.97 37.03 29.58 68.60 2.03 39.06 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 28 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.23 8.07 -2.38 -0.02 1.22 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.56 7.76 -2.39 -0.02 1.54 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.25 7.68 -2.39 -0.02 2.24 16 40 H 0.42 12.92 8.50 -96.74 -0.82 12.10 16 41 H 0.12 4.98 7.32 -2.91 -0.02 4.96 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.11 5.84 6.22 -2.91 -0.02 5.82 16 45 H 0.30 13.28 8.30 -92.71 -0.77 12.52 16 Total: -1.00 -65.92 375.30 -0.65 -66.57 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: 0.18 Total: 41.03 kcal Atomic # 6 Polarization: -79.10 SS G_CDS: 3.87 Total: -75.23 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -0.70 Total: -79.24 kcal Atomic # 8 Polarization: -104.79 SS G_CDS: -5.75 Total: -110.54 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Atomic # 16 Polarization: 118.62 SS G_CDS: -0.28 Total: 118.34 kcal Total: -65.92 -0.65 -66.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601387486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.909 kcal (2) G-P(sol) polarization free energy of solvation -65.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds