Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99834 * 2 1 4 4 H 1.09001 * 110.05813 * 32.36084 * 3 2 1 5 5 C 1.54377 * 110.04738 * 270.88847 * 3 2 1 6 6 C 1.54881 * 104.19711 * 217.08915 * 5 3 2 7 7 C 1.54890 * 102.75227 * 37.97118 * 6 5 3 8 8 C 1.53873 * 110.03451 * 153.77948 * 3 2 1 9 9 H 1.09004 * 110.03273 * 238.62046 * 8 3 2 10 10 C 1.53002 * 110.03002 * 0.02562 * 8 3 2 11 11 N 1.46507 * 109.47136 * 181.37258 * 10 8 3 12 12 S 1.65593 * 119.99885 * 163.98455 * 11 10 8 13 13 O 1.42103 * 106.40605 * 309.26533 * 12 11 10 14 14 O 1.42106 * 106.39914 * 176.34478 * 12 11 10 15 15 C 1.76198 * 107.21810 * 62.80821 * 12 11 10 16 16 C 1.37643 * 120.12729 * 244.85346 * 15 12 11 17 17 C 1.38613 * 120.24887 * 179.97438 * 16 15 12 18 18 C 1.38655 * 120.50291 * 0.03240 * 17 16 15 19 19 C 1.37598 * 120.24716 * 359.97438 * 18 17 16 20 20 C 1.40698 * 120.12915 * 64.83627 * 15 12 11 21 21 C 1.41399 * 120.24517 * 0.02562 * 20 15 12 22 22 H 1.08003 * 119.99709 * 328.40564 * 21 20 15 23 23 C 1.39939 * 120.00303 * 148.41068 * 21 20 15 24 24 N 1.30830 * 119.99837 * 348.42439 * 23 21 20 25 25 Si 1.86801 * 120.00100 * 168.42764 * 23 21 20 26 26 H 1.48495 * 109.47015 * 84.98716 * 25 23 21 27 27 H 1.48500 * 109.47014 * 204.98977 * 25 23 21 28 28 H 1.48496 * 109.47061 * 324.98741 * 25 23 21 29 29 H 1.08994 * 109.47168 * 64.70039 * 1 2 3 30 30 H 1.08996 * 109.46473 * 184.70027 * 1 2 3 31 31 H 1.08997 * 109.47000 * 304.69982 * 1 2 3 32 32 H 1.09001 * 110.46366 * 98.41899 * 5 3 2 33 33 H 1.08997 * 110.62003 * 335.83778 * 5 3 2 34 34 H 1.09003 * 110.76098 * 279.65156 * 6 5 3 35 35 H 1.09008 * 110.91350 * 156.35469 * 6 5 3 36 36 H 1.08994 * 110.48771 * 203.37950 * 7 6 5 37 37 H 1.09003 * 110.48859 * 80.73260 * 7 6 5 38 38 H 1.08994 * 109.47567 * 61.36558 * 10 8 3 39 39 H 1.09002 * 109.46716 * 301.36744 * 10 8 3 40 40 H 0.97001 * 119.99460 * 343.97892 * 11 10 8 41 41 H 1.07995 * 119.87299 * 359.97438 * 16 15 12 42 42 H 1.08000 * 119.74614 * 180.02562 * 17 16 15 43 43 H 1.07999 * 119.87750 * 179.72195 * 18 17 16 44 44 H 1.08000 * 120.12956 * 179.97438 * 19 18 17 45 45 H 0.96995 * 119.99641 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3722 1.9988 0.5480 5 6 2.2049 1.7981 -1.4501 6 6 3.5434 2.5764 -1.4104 7 6 4.4047 1.7263 -0.4436 8 6 3.4094 1.2596 0.6387 9 1 3.4501 1.9299 1.4973 10 6 3.7405 -0.1695 1.0732 11 7 5.0604 -0.1934 1.7087 12 16 5.5155 -1.4966 2.6234 13 8 4.4601 -1.7272 3.5466 14 8 6.8584 -1.2577 3.0219 15 6 5.5554 -2.8961 1.5536 16 6 4.6791 -3.9395 1.7481 17 6 4.7079 -5.0415 0.9077 18 6 5.6180 -5.1068 -0.1362 19 6 6.5036 -4.0754 -0.3493 20 6 6.4830 -2.9512 0.4972 21 6 7.3883 -1.8854 0.2878 22 1 7.0990 -0.8747 0.5355 23 6 8.6589 -2.1400 -0.2403 24 7 9.0960 -3.3699 -0.3291 25 14 9.7310 -0.7238 -0.8185 26 1 10.4789 -0.1655 0.3365 27 1 10.6912 -1.2146 -1.8395 28 1 8.8752 0.3345 -1.4123 29 1 -0.3633 0.4391 -0.9290 30 1 -0.3632 -1.0242 0.0842 31 1 -0.3633 0.5850 0.8449 32 1 1.3881 2.4585 -1.7411 33 1 2.2746 0.9540 -2.1361 34 1 3.3947 3.5807 -1.0137 35 1 3.9994 2.6170 -2.3997 36 1 5.1931 2.3343 -0.0002 37 1 4.8304 0.8692 -0.9654 38 1 3.7455 -0.8227 0.2007 39 1 2.9894 -0.5168 1.7827 40 1 5.6676 0.5543 1.5936 41 1 3.9663 -3.8994 2.5584 42 1 4.0163 -5.8554 1.0675 43 1 5.6347 -5.9722 -0.7821 44 1 7.2120 -4.1284 -1.1628 45 1 9.9765 -3.5464 -0.6955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601387487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = -117.932837 kcal Electronic energy + Delta-G solvation = -28791.753864 eV Core-core repulsion = 24900.190247 eV Total energy + Delta-G solvation = -3891.563617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.39676 -37.53117 -36.29626 -36.09209 -34.74208 -34.19024 -33.76731 -30.17426 -29.53650 -29.24224 -28.19871 -26.13560 -25.47668 -23.96649 -21.60315 -21.08704 -20.89222 -19.70122 -18.49131 -17.62831 -17.03475 -16.77590 -16.10517 -15.63603 -15.44033 -15.25417 -14.81858 -14.51200 -14.32074 -14.01980 -13.93443 -13.36764 -13.21720 -13.08006 -12.69447 -12.54866 -12.33763 -11.89002 -11.60765 -11.45899 -11.41941 -11.23050 -11.11408 -11.08009 -11.07053 -11.01671 -10.93329 -10.69259 -10.67751 -10.60315 -10.49737 -10.28923 -9.83371 -9.58001 -9.38863 -9.32254 -8.64252 -7.96942 -7.52185 -6.96885 -4.69426 1.63770 2.40149 2.78656 2.99600 3.02541 3.15729 3.75048 3.82096 4.01908 4.46718 4.52591 4.56051 4.81048 4.86263 5.14013 5.22309 5.27767 5.31967 5.35161 5.42724 5.55317 5.56768 5.60520 5.67983 5.73714 5.82031 5.96490 6.00763 6.09218 6.13986 6.18125 6.28835 6.32579 6.44346 6.48848 6.60714 6.85187 6.99209 7.14006 7.21121 7.37127 7.54459 7.63897 7.74559 7.85241 7.95453 8.33665 8.57289 8.70181 9.98312 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010011 B = 0.005170 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.283609 B = 5414.207691 C = 6421.271471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.090 3.910 4 H 0.064 0.936 5 C -0.147 4.147 6 C -0.122 4.122 7 C -0.124 4.124 8 C -0.095 4.095 9 H 0.084 0.916 10 C 0.143 3.857 11 N -1.124 6.124 12 S 2.702 3.298 13 O -1.000 7.000 14 O -0.966 6.966 15 C -0.770 4.770 16 C -0.002 4.002 17 C -0.248 4.248 18 C -0.076 4.076 19 C -0.156 4.156 20 C 0.191 3.809 21 C -0.451 4.451 22 H 0.087 0.913 23 C 0.082 3.918 24 N -0.780 5.780 25 Si 0.912 3.088 26 H -0.262 1.262 27 H -0.275 1.275 28 H -0.257 1.257 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.408 0.592 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.120 0.880 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 10.091 -4.173 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.032 3.968 4 H 0.082 0.918 5 C -0.185 4.185 6 C -0.160 4.160 7 C -0.162 4.162 8 C -0.115 4.115 9 H 0.102 0.898 10 C 0.017 3.983 11 N -0.881 5.881 12 S 2.799 3.201 13 O -0.990 6.990 14 O -0.957 6.957 15 C -0.865 4.865 16 C -0.022 4.022 17 C -0.269 4.269 18 C -0.095 4.095 19 C -0.176 4.176 20 C 0.187 3.813 21 C -0.479 4.479 22 H 0.105 0.895 23 C -0.138 4.138 24 N -0.404 5.404 25 Si 0.735 3.265 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.180 1.180 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.241 0.759 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.239 9.674 -3.283 14.464 hybrid contribution 0.500 0.550 -1.060 1.295 sum -9.738 10.224 -4.344 14.773 Atomic orbital electron populations 1.22768 0.81582 1.02767 0.99512 1.88036 1.19151 1.27164 1.94851 1.22839 0.94101 0.84560 0.95345 0.91831 1.22929 0.97753 1.00399 0.97406 1.22402 0.95306 0.98315 0.99950 1.22506 0.97253 1.00316 0.96128 1.22090 0.93252 0.97802 0.98348 0.89812 1.20920 0.83083 0.96086 0.98208 1.55682 1.24766 1.36465 1.71203 1.01017 0.72517 0.73283 0.73290 1.93441 1.58415 1.86107 1.61035 1.93541 1.35584 1.85087 1.81466 1.29924 1.16615 1.19596 1.20356 1.20262 0.94011 0.92277 0.95676 1.20483 1.04868 0.99913 1.01594 1.20887 0.95140 0.97068 0.96406 1.21412 0.99675 0.95362 1.01168 1.16986 0.86661 0.91820 0.85883 1.19779 0.97381 0.95166 1.35622 0.89488 1.25901 0.98515 0.96971 0.92461 1.69782 1.18447 1.20915 1.31247 0.86236 0.79626 0.81270 0.79322 1.18627 1.19948 1.18039 0.94417 0.89647 0.94201 0.91914 0.90212 0.91698 0.91284 0.91222 0.89917 0.91032 0.90547 0.75867 0.87444 0.88767 0.88873 0.86241 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.90 101.05 1.10 1.40 16 2 O -0.37 -4.87 8.49 -35.23 -0.30 -5.17 16 3 C 0.09 1.02 3.35 -25.55 -0.09 0.93 16 4 H 0.06 0.61 7.78 -51.93 -0.40 0.21 16 5 C -0.15 -1.48 6.53 -25.02 -0.16 -1.64 16 6 C -0.12 -1.19 6.91 -24.74 -0.17 -1.37 16 7 C -0.12 -1.48 5.69 -25.07 -0.14 -1.62 16 8 C -0.09 -1.19 3.08 -89.50 -0.28 -1.46 16 9 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.14 2.31 4.51 -4.04 -0.02 2.29 16 11 N -1.12 -20.06 4.96 -10.61 -0.05 -20.11 16 12 S 2.70 60.60 4.96 -107.50 -0.53 60.07 16 13 O -1.00 -23.43 16.50 -57.17 -0.94 -24.37 16 14 O -0.97 -24.50 16.64 -57.17 -0.95 -25.45 16 15 C -0.77 -18.80 5.89 -38.87 -0.23 -19.03 16 16 C 0.00 -0.06 9.54 -39.66 -0.38 -0.43 16 17 C -0.25 -5.54 10.05 -39.29 -0.39 -5.94 16 18 C -0.08 -1.74 10.02 -39.66 -0.40 -2.13 16 19 C -0.16 -3.91 8.64 -38.87 -0.34 -4.25 16 20 C 0.19 4.92 5.51 -106.82 -0.59 4.33 16 21 C -0.45 -11.35 7.54 -37.74 -0.28 -11.64 16 22 H 0.09 2.03 5.94 -52.48 -0.31 1.72 16 23 C 0.08 2.00 5.22 -17.34 -0.09 1.91 16 24 N -0.78 -19.52 11.09 55.55 0.62 -18.91 16 25 Si 0.91 18.11 29.58 -169.99 -5.03 13.08 16 26 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 28 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.34 7.99 -51.93 -0.42 -0.08 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 38 H 0.07 1.25 7.87 -51.93 -0.41 0.84 16 39 H 0.08 1.29 7.45 -51.93 -0.39 0.90 16 40 H 0.41 6.45 7.97 -34.47 -0.27 6.17 16 41 H 0.11 2.33 7.32 -52.49 -0.38 1.95 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.12 3.01 6.48 -52.49 -0.34 2.67 16 45 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -31.24 373.02 -10.71 -41.96 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.69 Total: 11.94 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: -2.45 Total: -38.66 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.56 Total: -39.02 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -2.19 Total: -54.99 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 60.60 SS G_CDS: -0.53 Total: 60.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.24 -10.71 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601387487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.973 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds