Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00082 * 2 1 4 4 H 1.09004 * 108.45003 * 32.30963 * 3 2 1 5 5 C 1.52567 * 108.39036 * 274.68932 * 3 2 1 6 6 C 1.50883 * 109.35970 * 153.82109 * 5 3 2 7 7 C 1.54294 * 110.23264 * 91.79883 * 6 5 3 8 8 N 1.47606 * 111.94604 * 319.69664 * 7 6 5 9 9 S 1.65602 * 118.64053 * 137.77712 * 8 7 6 10 10 O 1.42102 * 106.39993 * 150.80417 * 9 8 7 11 11 O 1.42088 * 106.40421 * 17.88064 * 9 8 7 12 12 C 1.76205 * 107.21843 * 264.33651 * 9 8 7 13 13 C 1.37640 * 120.13276 * 248.35344 * 12 9 8 14 14 C 1.38604 * 120.25009 * 180.27707 * 13 12 9 15 15 C 1.38664 * 120.50141 * 359.74926 * 14 13 12 16 16 C 1.37596 * 120.24731 * 359.97438 * 15 14 13 17 17 C 1.40696 * 120.12437 * 68.12328 * 12 9 8 18 18 C 1.41396 * 120.24263 * 0.02562 * 17 12 9 19 19 H 1.07996 * 120.00294 * 28.16438 * 18 17 12 20 20 C 1.39950 * 119.99922 * 208.16370 * 18 17 12 21 21 N 1.30827 * 119.99419 * 11.50840 * 20 18 17 22 22 Si 1.86792 * 120.00385 * 191.50680 * 20 18 17 23 23 H 1.48503 * 109.47425 * 65.00184 * 22 20 18 24 24 H 1.48504 * 109.47353 * 185.00680 * 22 20 18 25 25 H 1.48508 * 109.47126 * 305.00283 * 22 20 18 26 26 C 1.44574 * 122.71340 * 317.50734 * 8 7 6 27 27 C 1.47088 * 108.51419 * 149.99616 * 3 2 1 28 28 H 1.09001 * 109.47301 * 59.99784 * 1 2 3 29 29 H 1.08994 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47227 * 300.00042 * 1 2 3 31 31 H 1.08998 * 109.48667 * 273.78593 * 5 3 2 32 32 H 1.08997 * 109.48918 * 33.83234 * 5 3 2 33 33 H 1.09000 * 109.36661 * 212.07133 * 6 5 3 34 34 H 1.08993 * 109.36903 * 331.82537 * 6 5 3 35 35 H 1.09007 * 109.13921 * 199.01373 * 7 6 5 36 36 H 1.08996 * 108.96400 * 80.26715 * 7 6 5 37 37 H 1.08009 * 119.87103 * 0.02822 * 13 12 9 38 38 H 1.07999 * 119.74998 * 179.72109 * 14 13 12 39 39 H 1.08002 * 119.87536 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.12858 * 180.02562 * 16 15 14 41 41 H 0.97009 * 119.99391 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.44813 * 211.02016 * 26 8 7 43 43 H 1.09005 * 109.44938 * 330.96366 * 26 8 7 44 44 H 1.09002 * 109.32505 * 63.64369 * 27 3 2 45 45 H 1.09000 * 109.19217 * 304.07135 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3522 1.9761 0.5527 5 6 2.0979 1.7933 -1.4429 6 6 2.0780 3.3019 -1.4629 7 6 3.5177 3.8551 -1.4208 8 7 4.3760 3.0896 -0.4954 9 16 5.9197 2.7197 -0.9671 10 8 6.6943 2.6404 0.2216 11 8 6.2320 3.5960 -2.0411 12 6 5.8823 1.0941 -1.6459 13 6 6.5038 0.0565 -0.9888 14 6 6.4808 -1.2221 -1.5234 15 6 5.8287 -1.4725 -2.7212 16 6 5.1958 -0.4516 -3.3925 17 6 5.2129 0.8507 -2.8592 18 6 4.5673 1.9080 -3.5408 19 1 4.9274 2.9203 -3.4320 20 6 3.4615 1.6426 -4.3566 21 7 2.8861 0.4683 -4.3166 22 14 2.8073 2.9648 -5.5024 23 1 3.8290 3.2756 -6.5342 24 1 1.5688 2.4793 -6.1626 25 1 2.5037 4.1908 -4.7213 26 6 3.9264 2.6544 0.8079 27 6 3.3036 1.2408 0.6975 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 3.0245 1.4358 -1.8919 32 1 1.2484 1.4106 -2.0084 33 1 1.5856 3.6448 -2.3728 34 1 1.5294 3.6677 -0.5951 35 1 3.4912 4.8963 -1.0993 36 1 3.9454 3.8064 -2.4222 37 1 7.0147 0.2402 -0.0551 38 1 6.9749 -2.0294 -1.0033 39 1 5.8167 -2.4727 -3.1284 40 1 4.6881 -0.6488 -4.3251 41 1 2.1194 0.2845 -4.8818 42 1 4.7737 2.6253 1.4930 43 1 3.1783 3.3517 1.1853 44 1 3.9805 0.5909 0.1428 45 1 3.1516 0.8345 1.6974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601390564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -97.059957 kcal Electronic energy + Delta-G solvation = -30859.743053 eV Core-core repulsion = 26969.084552 eV Total energy + Delta-G solvation = -3890.658501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.08014 -37.59506 -36.50378 -36.40440 -34.89849 -33.96957 -32.21690 -31.80930 -30.23268 -29.51937 -26.65800 -25.66549 -25.37850 -24.22273 -21.73171 -21.12604 -20.61286 -19.96410 -18.02334 -17.66674 -17.23494 -16.51292 -15.91909 -15.48190 -15.43463 -14.91074 -14.78190 -14.46498 -14.16679 -13.79294 -13.41407 -13.31818 -13.13863 -12.78400 -12.60059 -12.46224 -12.08972 -12.02275 -11.66864 -11.49697 -11.37175 -11.29218 -11.25686 -11.17320 -11.11468 -10.80503 -10.59712 -10.56834 -10.48366 -10.34805 -10.06923 -9.92548 -9.85856 -9.35486 -9.15725 -9.01704 -8.36588 -7.96243 -7.56678 -7.04458 -4.77348 1.50573 2.35827 2.73364 2.92479 2.96544 3.09531 3.72846 3.83534 4.12995 4.38810 4.73377 5.06637 5.20143 5.29127 5.42599 5.44101 5.54270 5.55799 5.64324 5.65114 5.74531 5.80315 5.89292 5.98375 6.00094 6.07454 6.18416 6.21663 6.26601 6.42997 6.45015 6.57514 6.64930 6.69134 6.80440 6.85256 6.99196 7.07954 7.32850 7.36154 7.42794 7.54612 7.67947 7.70984 7.83626 7.95556 8.35744 8.50375 8.66594 9.86377 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.008354 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.656903 B = 3350.826122 C = 3973.303248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.385 6.385 3 C 0.107 3.893 4 H 0.038 0.962 5 C -0.154 4.154 6 C -0.119 4.119 7 C 0.114 3.886 8 N -0.986 5.986 9 S 2.697 3.303 10 O -0.996 6.996 11 O -0.974 6.974 12 C -0.775 4.775 13 C -0.003 4.003 14 C -0.245 4.245 15 C -0.076 4.076 16 C -0.156 4.156 17 C 0.195 3.805 18 C -0.479 4.479 19 H 0.118 0.882 20 C 0.085 3.915 21 N -0.768 5.768 22 Si 0.896 3.104 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.254 1.254 26 C 0.127 3.873 27 C -0.149 4.149 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.286 0.714 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 2.578 4.758 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C 0.050 3.950 4 H 0.056 0.944 5 C -0.192 4.192 6 C -0.158 4.158 7 C -0.010 4.010 8 N -0.821 5.821 9 S 2.796 3.204 10 O -0.986 6.986 11 O -0.964 6.964 12 C -0.870 4.870 13 C -0.023 4.023 14 C -0.266 4.266 15 C -0.095 4.095 16 C -0.175 4.175 17 C 0.190 3.810 18 C -0.507 4.507 19 H 0.135 0.865 20 C -0.137 4.137 21 N -0.391 5.391 22 Si 0.720 3.280 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.178 1.178 26 C 0.000 4.000 27 C -0.188 4.188 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.801 2.908 4.786 8.063 hybrid contribution -1.192 -0.249 -0.797 1.455 sum -6.993 2.659 3.989 8.478 Atomic orbital electron populations 1.22653 0.82453 1.01856 0.99208 1.88001 1.18461 1.28832 1.95130 1.21037 0.94104 0.83524 0.96311 0.94390 1.21873 1.07041 0.94330 0.95915 1.21619 0.96095 0.97012 1.01059 1.21995 0.91430 0.92756 0.94814 1.57099 1.32693 1.68782 1.23556 1.01243 0.71767 0.74904 0.72528 1.93426 1.68047 1.88468 1.48692 1.93457 1.82350 1.65526 1.55113 1.29837 1.26674 1.20358 1.10140 1.20204 0.93585 0.92280 0.96207 1.20484 1.09988 0.95988 1.00095 1.20903 0.96137 0.97495 0.94955 1.21525 1.01884 0.93144 1.00993 1.16943 0.84416 0.92997 0.86638 1.20505 1.10194 0.97165 1.22794 0.86491 1.25896 0.95962 0.96388 0.95410 1.69809 1.16507 1.21538 1.31197 0.86517 0.78848 0.81659 0.81021 1.18300 1.20040 1.17754 1.21122 1.00322 0.94087 0.84452 1.21448 0.97547 0.98794 1.01048 0.94380 0.90413 0.94974 0.85300 0.92416 0.91494 0.93013 0.92973 0.87368 0.87574 0.88856 0.88992 0.85726 0.90235 0.89015 0.90709 0.89358 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.70 101.05 1.08 1.57 16 2 O -0.39 -6.90 10.21 -35.23 -0.36 -7.26 16 3 C 0.11 1.80 2.08 -29.79 -0.06 1.74 16 4 H 0.04 0.56 6.97 -51.93 -0.36 0.20 16 5 C -0.15 -2.81 4.69 -28.02 -0.13 -2.94 16 6 C -0.12 -1.88 5.71 -27.12 -0.15 -2.04 16 7 C 0.11 1.98 5.46 -2.76 -0.02 1.96 16 8 N -0.99 -18.00 2.53 -113.10 -0.29 -18.28 16 9 S 2.70 58.44 5.09 -107.50 -0.55 57.90 16 10 O -1.00 -22.35 15.53 -57.17 -0.89 -23.24 16 11 O -0.97 -23.05 14.35 -57.17 -0.82 -23.87 16 12 C -0.77 -17.95 4.98 -38.87 -0.19 -18.15 16 13 C 0.00 -0.06 9.29 -39.66 -0.37 -0.43 16 14 C -0.25 -5.32 10.05 -39.29 -0.39 -5.72 16 15 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 16 C -0.16 -3.73 8.66 -38.87 -0.34 -4.07 16 17 C 0.19 4.70 4.52 -106.82 -0.48 4.22 16 18 C -0.48 -11.12 5.11 -37.74 -0.19 -11.31 16 19 H 0.12 2.77 3.67 -52.49 -0.19 2.57 16 20 C 0.09 1.85 4.19 -17.34 -0.07 1.78 16 21 N -0.77 -16.89 10.60 55.55 0.59 -16.30 16 22 Si 0.90 16.78 29.57 -169.99 -5.03 11.75 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.28 -5.01 7.11 56.52 0.40 -4.60 16 25 H -0.25 -4.52 7.11 56.52 0.40 -4.11 16 26 C 0.13 1.99 5.64 -4.09 -0.02 1.97 16 27 C -0.15 -2.51 5.30 -28.58 -0.15 -2.66 16 28 H 0.04 0.51 7.35 -51.93 -0.38 0.13 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.38 8.06 -51.92 -0.42 -0.04 16 31 H 0.13 2.71 3.33 -51.93 -0.17 2.54 16 32 H 0.06 1.08 7.17 -51.93 -0.37 0.71 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.70 7.32 -51.93 -0.38 0.32 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 2.10 4.11 -51.93 -0.21 1.88 16 37 H 0.11 2.21 7.33 -52.48 -0.38 1.83 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.13 3.01 6.22 -52.49 -0.33 2.69 16 41 H 0.29 5.83 8.30 -40.82 -0.34 5.49 16 42 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16 43 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 44 H 0.09 1.76 6.85 -51.93 -0.36 1.40 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -27.36 345.92 -10.03 -37.39 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.01 Total: 12.88 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: -1.90 Total: -36.17 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.30 Total: -34.58 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -2.07 Total: -54.37 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 58.44 SS G_CDS: -0.55 Total: 57.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.36 -10.03 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601390564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.673 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds