Wall clock time and date at job start Sat Apr 11 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00082 * 2 1 4 4 H 1.09004 * 108.45003 * 32.30963 * 3 2 1 5 5 C 1.52567 * 108.39036 * 274.68932 * 3 2 1 6 6 C 1.50883 * 109.35970 * 153.82109 * 5 3 2 7 7 C 1.54294 * 110.23264 * 91.79883 * 6 5 3 8 8 N 1.47606 * 111.94604 * 319.69664 * 7 6 5 9 9 S 1.65602 * 118.64053 * 137.77712 * 8 7 6 10 10 O 1.42102 * 106.39993 * 150.80417 * 9 8 7 11 11 O 1.42088 * 106.40421 * 17.88064 * 9 8 7 12 12 C 1.76205 * 107.21843 * 264.33651 * 9 8 7 13 13 C 1.37640 * 120.13276 * 248.35344 * 12 9 8 14 14 C 1.38604 * 120.25009 * 180.27707 * 13 12 9 15 15 C 1.38664 * 120.50141 * 359.74926 * 14 13 12 16 16 C 1.37596 * 120.24731 * 359.97438 * 15 14 13 17 17 C 1.40696 * 120.12437 * 68.12328 * 12 9 8 18 18 C 1.41396 * 120.24263 * 0.02562 * 17 12 9 19 19 H 1.07996 * 120.00294 * 28.16438 * 18 17 12 20 20 C 1.39950 * 119.99922 * 208.16370 * 18 17 12 21 21 N 1.30827 * 119.99419 * 11.50840 * 20 18 17 22 22 Si 1.86792 * 120.00385 * 191.50680 * 20 18 17 23 23 H 1.48503 * 109.47425 * 65.00184 * 22 20 18 24 24 H 1.48504 * 109.47353 * 185.00680 * 22 20 18 25 25 H 1.48508 * 109.47126 * 305.00283 * 22 20 18 26 26 C 1.44574 * 122.71340 * 317.50734 * 8 7 6 27 27 C 1.47088 * 108.51419 * 149.99616 * 3 2 1 28 28 H 1.09001 * 109.47301 * 59.99784 * 1 2 3 29 29 H 1.08994 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47227 * 300.00042 * 1 2 3 31 31 H 1.08998 * 109.48667 * 273.78593 * 5 3 2 32 32 H 1.08997 * 109.48918 * 33.83234 * 5 3 2 33 33 H 1.09000 * 109.36661 * 212.07133 * 6 5 3 34 34 H 1.08993 * 109.36903 * 331.82537 * 6 5 3 35 35 H 1.09007 * 109.13921 * 199.01373 * 7 6 5 36 36 H 1.08996 * 108.96400 * 80.26715 * 7 6 5 37 37 H 1.08009 * 119.87103 * 0.02822 * 13 12 9 38 38 H 1.07999 * 119.74998 * 179.72109 * 14 13 12 39 39 H 1.08002 * 119.87536 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.12858 * 180.02562 * 16 15 14 41 41 H 0.97009 * 119.99391 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.44813 * 211.02016 * 26 8 7 43 43 H 1.09005 * 109.44938 * 330.96366 * 26 8 7 44 44 H 1.09002 * 109.32505 * 63.64369 * 27 3 2 45 45 H 1.09000 * 109.19217 * 304.07135 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3522 1.9761 0.5527 5 6 2.0979 1.7933 -1.4429 6 6 2.0780 3.3019 -1.4629 7 6 3.5177 3.8551 -1.4208 8 7 4.3760 3.0896 -0.4954 9 16 5.9197 2.7197 -0.9671 10 8 6.6943 2.6404 0.2216 11 8 6.2320 3.5960 -2.0411 12 6 5.8823 1.0941 -1.6459 13 6 6.5038 0.0565 -0.9888 14 6 6.4808 -1.2221 -1.5234 15 6 5.8287 -1.4725 -2.7212 16 6 5.1958 -0.4516 -3.3925 17 6 5.2129 0.8507 -2.8592 18 6 4.5673 1.9080 -3.5408 19 1 4.9274 2.9203 -3.4320 20 6 3.4615 1.6426 -4.3566 21 7 2.8861 0.4683 -4.3166 22 14 2.8073 2.9648 -5.5024 23 1 3.8290 3.2756 -6.5342 24 1 1.5688 2.4793 -6.1626 25 1 2.5037 4.1908 -4.7213 26 6 3.9264 2.6544 0.8079 27 6 3.3036 1.2408 0.6975 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 3.0245 1.4358 -1.8919 32 1 1.2484 1.4106 -2.0084 33 1 1.5856 3.6448 -2.3728 34 1 1.5294 3.6677 -0.5951 35 1 3.4912 4.8963 -1.0993 36 1 3.9454 3.8064 -2.4222 37 1 7.0147 0.2402 -0.0551 38 1 6.9749 -2.0294 -1.0033 39 1 5.8167 -2.4727 -3.1284 40 1 4.6881 -0.6488 -4.3251 41 1 2.1194 0.2845 -4.8818 42 1 4.7737 2.6253 1.4930 43 1 3.1783 3.3517 1.1853 44 1 3.9805 0.5909 0.1428 45 1 3.1516 0.8345 1.6974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601390564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:33 Heat of formation + Delta-G solvation = -113.383984 kcal Electronic energy + Delta-G solvation = -30860.450916 eV Core-core repulsion = 26969.084552 eV Total energy + Delta-G solvation = -3891.366364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38970 -39.29012 -38.17604 -37.78423 -36.66086 -35.65129 -33.54861 -33.11422 -31.96101 -31.26391 -27.79710 -27.31223 -26.80267 -25.46967 -23.43548 -22.85988 -21.99209 -21.27645 -19.62607 -19.33688 -18.80306 -17.86605 -17.56724 -17.11067 -16.85260 -16.21588 -16.16877 -15.99835 -15.63231 -15.17844 -15.03133 -14.82594 -14.67425 -14.41139 -14.02976 -13.73774 -13.63394 -13.44867 -13.19966 -12.97013 -12.96113 -12.88013 -12.84193 -12.76493 -12.68364 -12.24184 -12.15080 -12.05855 -11.80759 -11.66162 -11.61093 -11.40536 -11.31248 -10.88651 -10.87210 -10.30050 -9.83698 -9.63701 -9.32801 -8.69761 -6.51336 -0.13613 0.61652 1.04899 1.40070 1.47726 1.52360 2.17899 2.29542 2.70084 2.95090 3.04758 3.56353 3.70183 3.80498 4.07418 4.21098 4.24646 4.35787 4.36713 4.43168 4.52014 4.53929 4.54966 4.62213 4.68252 4.75269 4.80538 4.85944 4.89055 4.95748 5.05866 5.19396 5.25138 5.29650 5.33606 5.35814 5.41695 5.51020 5.62141 5.77570 5.91045 5.97921 6.06276 6.08190 6.21658 6.48816 6.59972 6.78584 6.91803 8.22874 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.008354 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.656903 B = 3350.826122 C = 3973.303248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.417 6.417 3 C 0.107 3.893 4 H 0.068 0.932 5 C -0.157 4.157 6 C -0.113 4.113 7 C 0.106 3.894 8 N -0.978 5.978 9 S 2.709 3.291 10 O -1.008 7.008 11 O -0.999 6.999 12 C -0.791 4.791 13 C -0.013 4.013 14 C -0.254 4.254 15 C -0.080 4.080 16 C -0.183 4.183 17 C 0.176 3.824 18 C -0.488 4.488 19 H 0.111 0.889 20 C 0.066 3.934 21 N -0.783 5.783 22 Si 0.937 3.063 23 H -0.269 1.269 24 H -0.265 1.265 25 H -0.236 1.236 26 C 0.123 3.877 27 C -0.148 4.148 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.292 0.708 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.049 0.951 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 3.797 6.013 10.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.337 6.337 3 C 0.050 3.950 4 H 0.086 0.914 5 C -0.195 4.195 6 C -0.152 4.152 7 C -0.018 4.018 8 N -0.815 5.815 9 S 2.806 3.194 10 O -0.998 6.998 11 O -0.990 6.990 12 C -0.885 4.885 13 C -0.033 4.033 14 C -0.274 4.274 15 C -0.099 4.099 16 C -0.203 4.203 17 C 0.171 3.829 18 C -0.515 4.515 19 H 0.128 0.872 20 C -0.155 4.155 21 N -0.406 5.406 22 Si 0.758 3.242 23 H -0.194 1.194 24 H -0.189 1.189 25 H -0.159 1.159 26 C -0.003 4.003 27 C -0.187 4.187 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.068 0.932 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.571 4.103 6.045 10.521 hybrid contribution -0.673 -0.691 -1.162 1.510 sum -8.244 3.412 4.883 10.171 Atomic orbital electron populations 1.22836 0.80543 1.02954 1.00275 1.87963 1.20739 1.29764 1.95268 1.21062 0.94545 0.83736 0.95639 0.91395 1.21830 1.04933 0.96008 0.96700 1.21611 0.95483 0.95270 1.02873 1.22159 0.91673 0.94294 0.93647 1.56858 1.31608 1.68534 1.24533 1.00768 0.72711 0.74052 0.71833 1.93398 1.69200 1.88461 1.48781 1.93414 1.83418 1.65958 1.56173 1.30133 1.26643 1.21467 1.10223 1.20467 0.93560 0.92666 0.96627 1.20796 1.09929 0.96619 1.00062 1.21185 0.95452 0.98192 0.95066 1.21572 1.03375 0.94040 1.01279 1.17172 0.85068 0.93376 0.87270 1.20524 1.10761 0.96596 1.23616 0.87197 1.26367 0.95548 0.97801 0.95823 1.69844 1.16673 1.22674 1.31381 0.85891 0.78407 0.80498 0.79401 1.19385 1.18877 1.15878 1.21382 1.01437 0.94354 0.83113 1.21442 0.96930 0.98829 1.01488 0.94524 0.89500 0.92515 0.88107 0.93807 0.90958 0.89723 0.89854 0.89819 0.86570 0.86293 0.86799 0.86804 0.89692 0.88854 0.86636 0.93179 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.70 113.37 1.21 1.98 16 2 O -0.42 -14.44 10.21 -148.98 -1.52 -15.96 16 3 C 0.11 3.36 2.08 28.61 0.06 3.42 16 4 H 0.07 1.70 6.97 -2.39 -0.02 1.69 16 5 C -0.16 -5.51 4.69 29.76 0.14 -5.37 16 6 C -0.11 -3.27 5.71 30.34 0.17 -3.09 16 7 C 0.11 3.43 5.46 86.61 0.47 3.90 16 8 N -0.98 -34.18 2.53 -511.75 -1.29 -35.48 16 9 S 2.71 117.53 5.09 -56.49 -0.29 117.24 16 10 O -1.01 -45.01 15.53 -128.00 -1.99 -47.00 16 11 O -1.00 -47.85 14.35 -128.00 -1.84 -49.69 16 12 C -0.79 -37.40 4.98 22.73 0.11 -37.29 16 13 C -0.01 -0.61 9.29 22.22 0.21 -0.40 16 14 C -0.25 -11.05 10.05 22.46 0.23 -10.83 16 15 C -0.08 -3.61 10.02 22.22 0.22 -3.39 16 16 C -0.18 -9.04 8.66 22.73 0.20 -8.84 16 17 C 0.18 8.72 4.52 -21.29 -0.10 8.62 16 18 C -0.49 -23.09 5.11 23.46 0.12 -22.97 16 19 H 0.11 5.31 3.67 -2.91 -0.01 5.30 16 20 C 0.07 2.85 4.19 85.26 0.36 3.21 16 21 N -0.78 -35.00 10.60 21.83 0.23 -34.77 16 22 Si 0.94 33.70 29.57 68.60 2.03 35.73 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 25 H -0.24 -7.76 7.11 99.48 0.71 -7.05 16 26 C 0.12 3.54 5.64 87.38 0.49 4.03 16 27 C -0.15 -4.72 5.30 29.39 0.16 -4.56 16 28 H 0.04 0.92 7.35 -2.39 -0.02 0.90 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.14 8.06 -2.38 -0.02 1.13 16 31 H 0.10 4.23 3.33 -2.39 -0.01 4.22 16 32 H 0.04 1.61 7.17 -2.39 -0.02 1.59 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 1.87 7.32 -2.39 -0.02 1.86 16 35 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.08 3.17 4.11 -2.39 -0.01 3.16 16 37 H 0.12 4.89 7.33 -2.91 -0.02 4.86 16 38 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.11 5.73 6.22 -2.91 -0.02 5.72 16 41 H 0.29 11.99 8.30 -92.70 -0.77 11.22 16 42 H 0.09 2.67 6.91 -2.39 -0.02 2.66 16 43 H 0.12 2.43 8.06 -2.38 -0.02 2.41 16 44 H 0.05 2.00 6.85 -2.39 -0.02 1.98 16 45 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -60.46 345.92 0.41 -60.06 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: 1.02 Total: 41.45 kcal Atomic # 6 Polarization: -75.64 SS G_CDS: 4.05 Total: -71.59 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.06 Total: -70.24 kcal Atomic # 8 Polarization: -107.30 SS G_CDS: -5.35 Total: -112.64 kcal Atomic # 14 Polarization: 33.70 SS G_CDS: 2.03 Total: 35.73 kcal Atomic # 16 Polarization: 117.53 SS G_CDS: -0.29 Total: 117.24 kcal Total: -60.46 0.41 -60.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601390564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.329 kcal (2) G-P(sol) polarization free energy of solvation -60.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds