Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.53000 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.69911 * 167.10093 * 4 3 2 6 6 C 1.53188 * 109.58591 * 46.74790 * 4 3 2 7 7 C 1.53045 * 109.31366 * 185.57564 * 6 4 3 8 8 C 1.53041 * 109.53715 * 61.36324 * 7 6 4 9 9 C 1.53192 * 109.31207 * 298.63718 * 8 7 6 10 10 N 1.46920 * 108.77678 * 54.63395 * 9 8 7 11 11 S 1.65603 * 120.63161 * 126.11631 * 10 9 8 12 12 O 1.42098 * 106.40333 * 224.58938 * 11 10 9 13 13 O 1.42105 * 106.39771 * 357.50425 * 11 10 9 14 14 C 1.76194 * 107.21947 * 111.04486 * 11 10 9 15 15 C 1.37639 * 120.12622 * 115.06177 * 14 11 10 16 16 C 1.38619 * 120.24542 * 179.70169 * 15 14 11 17 17 C 1.38651 * 120.50137 * 0.59708 * 16 15 14 18 18 C 1.37599 * 120.24837 * 359.67699 * 17 16 15 19 19 C 1.40697 * 120.12747 * 295.33356 * 14 11 10 20 20 C 1.41391 * 120.24683 * 0.02562 * 19 14 11 21 21 H 1.08008 * 119.99939 * 28.44499 * 20 19 14 22 22 C 1.39950 * 120.00542 * 208.45076 * 20 19 14 23 23 N 1.30818 * 119.99520 * 8.92987 * 22 20 19 24 24 Si 1.86795 * 120.00164 * 188.92874 * 22 20 19 25 25 H 1.48503 * 109.47185 * 59.99972 * 24 22 20 26 26 H 1.48499 * 109.46950 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47361 * 299.99941 * 24 22 20 28 28 H 1.08998 * 109.47551 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46967 * 300.00267 * 1 2 3 30 30 H 1.09002 * 109.47386 * 59.99659 * 1 2 3 31 31 H 1.09002 * 109.46577 * 60.00200 * 3 2 1 32 32 H 1.08995 * 109.47330 * 300.00001 * 3 2 1 33 33 H 1.09005 * 109.50041 * 65.62120 * 6 4 3 34 34 H 1.09004 * 109.52826 * 305.54205 * 6 4 3 35 35 H 1.09001 * 109.45883 * 301.34554 * 7 6 4 36 36 H 1.08997 * 109.45897 * 181.38700 * 7 6 4 37 37 H 1.08997 * 109.49687 * 178.68528 * 8 7 6 38 38 H 1.09000 * 109.49648 * 58.58820 * 8 7 6 39 39 H 1.08996 * 109.58438 * 294.84893 * 9 8 7 40 40 H 1.09001 * 109.69879 * 174.49283 * 9 8 7 41 41 H 1.07994 * 119.87891 * 359.97438 * 15 14 11 42 42 H 1.08002 * 119.74616 * 180.29652 * 16 15 14 43 43 H 1.08003 * 119.87749 * 179.70891 * 17 16 15 44 44 H 1.08009 * 120.12909 * 180.02562 * 18 17 16 45 45 H 0.97001 * 120.00165 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9809 2.1527 -0.2284 6 6 3.9697 0.1580 -1.0502 7 6 5.4811 -0.0609 -0.9497 8 6 5.8275 -0.6115 0.4355 9 6 5.4143 0.4064 1.5032 10 7 3.9932 0.7320 1.3214 11 16 2.9263 0.5850 2.5793 12 8 1.7719 -0.0554 2.0536 13 8 3.6683 0.0708 3.6767 14 6 2.4286 2.2128 3.0341 15 6 1.1193 2.6054 2.8728 16 6 0.7238 3.8834 3.2355 17 6 1.6423 4.7842 3.7525 18 6 2.9576 4.4153 3.9173 19 6 3.3693 3.1183 3.5583 20 6 4.7184 2.7283 3.7226 21 1 5.1463 1.9776 3.0747 22 6 5.4993 3.3149 4.7250 23 7 4.9417 4.0907 5.6185 24 14 7.3377 2.9898 4.7870 25 1 7.9656 3.4556 3.5244 26 1 7.9315 3.7224 5.9341 27 1 7.5778 1.5336 4.9513 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.7209 0.5280 -2.0449 34 1 3.4530 -0.7854 -0.8733 35 1 5.9963 0.8874 -1.1028 36 1 5.7964 -0.7726 -1.7127 37 1 6.9011 -0.7891 0.4983 38 1 5.2933 -1.5474 0.5991 39 1 6.0129 1.3110 1.3966 40 1 5.5679 -0.0187 2.4951 41 1 0.3965 1.9136 2.4661 42 1 -0.3067 4.1814 3.1099 43 1 1.3241 5.7790 4.0275 44 1 3.6714 5.1184 4.3207 45 1 5.4830 4.4976 6.3131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601434696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -88.174962 kcal Electronic energy + Delta-G solvation = -30372.788963 eV Core-core repulsion = 26482.515744 eV Total energy + Delta-G solvation = -3890.273219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.81240 -37.59280 -36.97392 -35.72420 -34.61543 -33.88845 -32.20819 -31.46538 -30.21020 -29.59920 -26.90477 -25.57668 -25.21500 -23.67547 -21.77339 -21.53723 -21.12705 -20.07803 -17.92836 -17.61580 -16.89698 -16.30225 -16.03461 -15.38246 -15.24962 -14.74730 -14.59266 -14.37560 -13.98988 -13.88550 -13.69400 -13.23162 -13.14850 -13.05459 -12.77285 -12.73541 -11.96944 -11.84840 -11.72663 -11.41589 -11.28461 -11.19144 -11.13661 -11.09938 -10.86161 -10.80122 -10.66892 -10.56866 -10.51450 -10.42499 -10.20577 -9.92830 -9.84009 -9.43638 -9.23258 -8.84325 -8.31929 -7.95724 -7.58393 -6.99678 -4.75316 1.60937 2.35425 2.72559 2.95867 2.98389 3.11828 3.77629 3.87503 4.31954 4.41958 4.84723 4.95513 5.04440 5.13009 5.30816 5.39234 5.44029 5.56872 5.64353 5.71373 5.77361 5.85677 5.91231 5.96498 6.00251 6.03739 6.10940 6.16999 6.18141 6.22453 6.28134 6.36196 6.40188 6.44107 6.69254 6.72673 6.78419 6.96045 7.06518 7.27977 7.34829 7.49638 7.68276 7.75269 7.80451 7.90968 8.30412 8.52201 8.66246 9.91882 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.007055 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.261247 B = 3967.690241 C = 5570.936442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.169 3.831 5 H 0.081 0.919 6 C -0.122 4.122 7 C -0.116 4.116 8 C -0.132 4.132 9 C 0.117 3.883 10 N -0.992 5.992 11 S 2.690 3.310 12 O -0.961 6.961 13 O -0.972 6.972 14 C -0.777 4.777 15 C -0.008 4.008 16 C -0.250 4.250 17 C -0.080 4.080 18 C -0.156 4.156 19 C 0.185 3.815 20 C -0.450 4.450 21 H 0.093 0.907 22 C 0.080 3.920 23 N -0.781 5.781 24 Si 0.910 3.090 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.254 1.254 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.020 0.980 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.128 0.872 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -2.787 -10.447 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.260 6.260 3 C -0.057 4.057 4 C 0.062 3.938 5 H 0.099 0.901 6 C -0.161 4.161 7 C -0.153 4.153 8 C -0.172 4.172 9 C -0.008 4.008 10 N -0.828 5.828 11 S 2.788 3.212 12 O -0.952 6.952 13 O -0.962 6.962 14 C -0.871 4.871 15 C -0.028 4.028 16 C -0.270 4.270 17 C -0.099 4.099 18 C -0.176 4.176 19 C 0.180 3.820 20 C -0.478 4.478 21 H 0.111 0.889 22 C -0.141 4.141 23 N -0.404 5.404 24 Si 0.733 3.267 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.178 1.178 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.146 0.854 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.620 -3.637 -9.838 10.507 hybrid contribution 0.455 1.184 0.240 1.290 sum 1.075 -2.453 -9.599 9.966 Atomic orbital electron populations 1.22431 0.82199 1.01602 0.98431 1.87979 1.18719 1.24762 1.94562 1.23088 0.92851 0.87633 1.02110 1.20837 0.91807 0.97599 0.83523 0.90105 1.21807 0.95798 1.00874 0.97622 1.21475 0.96279 1.00817 0.96753 1.21907 1.00736 0.99219 0.95290 1.21429 0.81166 0.98252 0.99953 1.57833 1.19547 1.82782 1.22667 1.01624 0.72829 0.74784 0.71931 1.93609 1.48933 1.74264 1.78353 1.93484 1.72400 1.79312 1.51035 1.30120 1.01684 1.23410 1.31895 1.20193 0.93382 0.95147 0.94061 1.20483 0.98113 0.95701 1.12698 1.20898 0.94320 0.97418 0.97226 1.21619 0.95135 0.97034 1.03804 1.17019 0.91098 0.89690 0.84188 1.20043 0.95206 1.18933 1.13586 0.88902 1.25948 1.01718 0.92519 0.93870 1.69758 1.38341 1.22194 1.10124 0.86296 0.80632 0.80640 0.79181 1.18268 1.19869 1.17819 0.90722 0.93909 0.96194 0.91283 0.92474 0.91757 0.90112 0.92078 0.92336 0.91339 0.91670 0.91429 0.88450 0.87662 0.88896 0.88905 0.85429 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 10.24 101.05 1.03 1.80 16 2 O -0.34 -5.99 6.59 -60.58 -0.40 -6.39 16 3 C 0.02 0.34 4.82 37.16 0.18 0.52 16 4 C 0.17 2.67 3.35 -67.60 -0.23 2.45 16 5 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 6 C -0.12 -1.63 5.17 -26.61 -0.14 -1.77 16 7 C -0.12 -1.39 5.88 -26.69 -0.16 -1.55 16 8 C -0.13 -1.78 6.08 -26.61 -0.16 -1.94 16 9 C 0.12 1.98 4.59 -3.71 -0.02 1.96 16 10 N -0.99 -18.35 2.99 -106.48 -0.32 -18.66 16 11 S 2.69 59.89 4.41 -107.50 -0.47 59.41 16 12 O -0.96 -21.10 10.82 -67.48 -0.73 -21.83 16 13 O -0.97 -24.76 14.91 -57.17 -0.85 -25.62 16 14 C -0.78 -18.47 5.19 -38.87 -0.20 -18.68 16 15 C -0.01 -0.18 7.80 -39.66 -0.31 -0.49 16 16 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 17 C -0.08 -1.78 10.02 -39.66 -0.40 -2.18 16 18 C -0.16 -3.85 8.67 -38.87 -0.34 -4.19 16 19 C 0.18 4.69 5.56 -106.83 -0.59 4.10 16 20 C -0.45 -11.22 7.66 -37.74 -0.29 -11.51 16 21 H 0.09 2.16 3.37 -52.48 -0.18 1.98 16 22 C 0.08 1.92 5.29 -17.34 -0.09 1.83 16 23 N -0.78 -19.20 10.73 55.55 0.60 -18.60 16 24 Si 0.91 17.84 29.57 -169.99 -5.03 12.81 16 25 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 27 H -0.25 -5.02 7.11 56.52 0.40 -4.62 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.04 0.69 7.22 -51.93 -0.37 0.31 16 30 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 1.28 3.14 -51.93 -0.16 1.11 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.20 7.21 -51.93 -0.37 0.83 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.08 7.63 -51.93 -0.40 0.68 16 40 H 0.10 1.80 6.46 -51.93 -0.34 1.46 16 41 H 0.11 2.15 6.38 -52.49 -0.34 1.82 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 44 H 0.13 3.18 6.13 -52.48 -0.32 2.86 16 45 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -29.56 346.94 -10.34 -39.90 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.26 Total: 9.18 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: -2.10 Total: -35.44 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.28 Total: -37.27 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -1.98 Total: -53.83 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: 59.89 SS G_CDS: -0.47 Total: 59.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.56 -10.34 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.276 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds