Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.53000 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.69911 * 167.10093 * 4 3 2 6 6 C 1.53188 * 109.58591 * 46.74790 * 4 3 2 7 7 C 1.53045 * 109.31366 * 185.57564 * 6 4 3 8 8 C 1.53041 * 109.53715 * 61.36324 * 7 6 4 9 9 C 1.53192 * 109.31207 * 298.63718 * 8 7 6 10 10 N 1.46920 * 108.77678 * 54.63395 * 9 8 7 11 11 S 1.65603 * 120.63161 * 126.11631 * 10 9 8 12 12 O 1.42098 * 106.40333 * 224.58938 * 11 10 9 13 13 O 1.42105 * 106.39771 * 357.50425 * 11 10 9 14 14 C 1.76194 * 107.21947 * 111.04486 * 11 10 9 15 15 C 1.37639 * 120.12622 * 115.06177 * 14 11 10 16 16 C 1.38619 * 120.24542 * 179.70169 * 15 14 11 17 17 C 1.38651 * 120.50137 * 0.59708 * 16 15 14 18 18 C 1.37599 * 120.24837 * 359.67699 * 17 16 15 19 19 C 1.40697 * 120.12747 * 295.33356 * 14 11 10 20 20 C 1.41391 * 120.24683 * 0.02562 * 19 14 11 21 21 H 1.08008 * 119.99939 * 28.44499 * 20 19 14 22 22 C 1.39950 * 120.00542 * 208.45076 * 20 19 14 23 23 N 1.30818 * 119.99520 * 8.92987 * 22 20 19 24 24 Si 1.86795 * 120.00164 * 188.92874 * 22 20 19 25 25 H 1.48503 * 109.47185 * 59.99972 * 24 22 20 26 26 H 1.48499 * 109.46950 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47361 * 299.99941 * 24 22 20 28 28 H 1.08998 * 109.47551 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46967 * 300.00267 * 1 2 3 30 30 H 1.09002 * 109.47386 * 59.99659 * 1 2 3 31 31 H 1.09002 * 109.46577 * 60.00200 * 3 2 1 32 32 H 1.08995 * 109.47330 * 300.00001 * 3 2 1 33 33 H 1.09005 * 109.50041 * 65.62120 * 6 4 3 34 34 H 1.09004 * 109.52826 * 305.54205 * 6 4 3 35 35 H 1.09001 * 109.45883 * 301.34554 * 7 6 4 36 36 H 1.08997 * 109.45897 * 181.38700 * 7 6 4 37 37 H 1.08997 * 109.49687 * 178.68528 * 8 7 6 38 38 H 1.09000 * 109.49648 * 58.58820 * 8 7 6 39 39 H 1.08996 * 109.58438 * 294.84893 * 9 8 7 40 40 H 1.09001 * 109.69879 * 174.49283 * 9 8 7 41 41 H 1.07994 * 119.87891 * 359.97438 * 15 14 11 42 42 H 1.08002 * 119.74616 * 180.29652 * 16 15 14 43 43 H 1.08003 * 119.87749 * 179.70891 * 17 16 15 44 44 H 1.08009 * 120.12909 * 180.02562 * 18 17 16 45 45 H 0.97001 * 120.00165 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9809 2.1527 -0.2284 6 6 3.9697 0.1580 -1.0502 7 6 5.4811 -0.0609 -0.9497 8 6 5.8275 -0.6115 0.4355 9 6 5.4143 0.4064 1.5032 10 7 3.9932 0.7320 1.3214 11 16 2.9263 0.5850 2.5793 12 8 1.7719 -0.0554 2.0536 13 8 3.6683 0.0708 3.6767 14 6 2.4286 2.2128 3.0341 15 6 1.1193 2.6054 2.8728 16 6 0.7238 3.8834 3.2355 17 6 1.6423 4.7842 3.7525 18 6 2.9576 4.4153 3.9173 19 6 3.3693 3.1183 3.5583 20 6 4.7184 2.7283 3.7226 21 1 5.1463 1.9776 3.0747 22 6 5.4993 3.3149 4.7250 23 7 4.9417 4.0907 5.6185 24 14 7.3377 2.9898 4.7870 25 1 7.9656 3.4556 3.5244 26 1 7.9315 3.7224 5.9341 27 1 7.5778 1.5336 4.9513 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.7209 0.5280 -2.0449 34 1 3.4530 -0.7854 -0.8733 35 1 5.9963 0.8874 -1.1028 36 1 5.7964 -0.7726 -1.7127 37 1 6.9011 -0.7891 0.4983 38 1 5.2933 -1.5474 0.5991 39 1 6.0129 1.3110 1.3966 40 1 5.5679 -0.0187 2.4951 41 1 0.3965 1.9136 2.4661 42 1 -0.3067 4.1814 3.1099 43 1 1.3241 5.7790 4.0275 44 1 3.6714 5.1184 4.3207 45 1 5.4830 4.4976 6.3131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601434696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -105.365064 kcal Electronic energy + Delta-G solvation = -30373.534381 eV Core-core repulsion = 26482.515744 eV Total energy + Delta-G solvation = -3891.018638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.08538 -39.34199 -38.42480 -37.30538 -36.41605 -35.66274 -33.41184 -32.71415 -31.98524 -31.37351 -28.10210 -27.36349 -26.44487 -24.90399 -23.39463 -23.01340 -22.81564 -21.26933 -19.64513 -19.26098 -18.45236 -17.90354 -17.36735 -17.07624 -16.74154 -16.18400 -16.00124 -15.78609 -15.50840 -15.19996 -14.94525 -14.87452 -14.68843 -14.47565 -14.40294 -13.96613 -13.64624 -13.27106 -13.09606 -12.93396 -12.85029 -12.79117 -12.70946 -12.61499 -12.46890 -12.32583 -12.15919 -12.08719 -11.86037 -11.66445 -11.61550 -11.32331 -11.18519 -11.11433 -10.96997 -10.17395 -9.77224 -9.63221 -9.39159 -8.76019 -6.59889 -0.06929 0.55523 0.97226 1.34866 1.46337 1.51884 2.15681 2.33651 2.64991 3.03077 3.19679 3.50612 3.70478 3.85956 3.96767 4.11814 4.24887 4.29832 4.32259 4.43332 4.48690 4.50604 4.65619 4.67993 4.70850 4.71905 4.85212 4.90518 4.93936 4.99141 5.05590 5.10696 5.14126 5.19352 5.30254 5.32472 5.33172 5.46537 5.53825 5.65627 5.70237 5.84241 5.97004 6.00864 6.11308 6.49762 6.53019 6.70229 6.85412 8.18383 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.007055 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.261247 B = 3967.690241 C = 5570.936442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.360 6.360 3 C 0.015 3.985 4 C 0.160 3.840 5 H 0.093 0.907 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.128 4.128 9 C 0.108 3.892 10 N -0.989 5.989 11 S 2.701 3.299 12 O -0.963 6.963 13 O -1.013 7.013 14 C -0.791 4.791 15 C -0.014 4.014 16 C -0.251 4.251 17 C -0.078 4.078 18 C -0.186 4.186 19 C 0.158 3.842 20 C -0.480 4.480 21 H 0.101 0.899 22 C 0.037 3.963 23 N -0.813 5.813 24 Si 0.966 3.034 25 H -0.239 1.239 26 H -0.263 1.263 27 H -0.260 1.260 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -2.777 -12.834 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.279 6.279 3 C -0.063 4.063 4 C 0.054 3.946 5 H 0.111 0.889 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.167 4.167 9 C -0.016 4.016 10 N -0.828 5.828 11 S 2.798 3.202 12 O -0.953 6.953 13 O -1.004 7.004 14 C -0.883 4.883 15 C -0.033 4.033 16 C -0.271 4.271 17 C -0.097 4.097 18 C -0.206 4.206 19 C 0.154 3.846 20 C -0.508 4.508 21 H 0.119 0.881 22 C -0.180 4.180 23 N -0.438 5.438 24 Si 0.785 3.215 25 H -0.162 1.162 26 H -0.187 1.187 27 H -0.184 1.184 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.134 -3.606 -12.228 12.799 hybrid contribution 0.134 1.173 0.932 1.504 sum 1.269 -2.433 -11.296 11.624 Atomic orbital electron populations 1.22579 0.81274 1.02441 0.99029 1.87945 1.19891 1.25400 1.94640 1.23191 0.93289 0.87379 1.02400 1.21178 0.91693 0.99046 0.82660 0.88935 1.21779 0.96637 0.99222 0.97823 1.21487 0.95270 1.01994 0.96152 1.21909 1.02130 0.97607 0.95051 1.21603 0.80312 0.99558 1.00169 1.57570 1.19732 1.82842 1.22673 1.01143 0.72911 0.74178 0.71932 1.93603 1.49340 1.74128 1.78233 1.93424 1.73353 1.80028 1.53567 1.30405 1.02267 1.23860 1.31792 1.20474 0.93187 0.95914 0.93746 1.20879 0.99550 0.95216 1.11438 1.21233 0.93551 0.98848 0.96080 1.21658 0.96200 0.97032 1.05672 1.17356 0.91939 0.90368 0.84968 1.20379 0.95771 1.19980 1.14633 0.88117 1.26820 1.05892 0.92075 0.93187 1.69813 1.39955 1.23195 1.10804 0.85462 0.75501 0.80141 0.80368 1.16176 1.18725 1.18373 0.89887 0.95469 0.93371 0.93568 0.89508 0.89100 0.91761 0.90942 0.89870 0.88817 0.92541 0.90721 0.90913 0.86206 0.85648 0.86180 0.86597 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.24 113.37 1.16 2.41 16 2 O -0.36 -12.13 6.59 -124.74 -0.82 -12.96 16 3 C 0.01 0.47 4.82 71.98 0.35 0.82 16 4 C 0.16 4.79 3.35 44.97 0.15 4.94 16 5 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 6 C -0.12 -2.77 5.17 30.67 0.16 -2.61 16 7 C -0.11 -2.30 5.88 30.62 0.18 -2.12 16 8 C -0.13 -3.18 6.08 30.67 0.19 -2.99 16 9 C 0.11 3.61 4.59 86.36 0.40 4.01 16 10 N -0.99 -36.35 2.99 -490.80 -1.47 -37.82 16 11 S 2.70 122.71 4.41 -56.49 -0.25 122.47 16 12 O -0.96 -42.66 10.82 -118.14 -1.28 -43.94 16 13 O -1.01 -53.72 14.91 -128.00 -1.91 -55.63 16 14 C -0.79 -38.30 5.19 22.73 0.12 -38.18 16 15 C -0.01 -0.61 7.80 22.22 0.17 -0.43 16 16 C -0.25 -10.54 10.05 22.46 0.23 -10.31 16 17 C -0.08 -3.47 10.02 22.22 0.22 -3.25 16 18 C -0.19 -9.39 8.67 22.73 0.20 -9.19 16 19 C 0.16 8.26 5.56 -21.29 -0.12 8.14 16 20 C -0.48 -24.67 7.66 23.46 0.18 -24.49 16 21 H 0.10 4.82 3.37 -2.91 -0.01 4.81 16 22 C 0.04 1.83 5.29 85.26 0.45 2.28 16 23 N -0.81 -41.25 10.73 21.83 0.23 -41.02 16 24 Si 0.97 36.66 29.57 68.60 2.03 38.69 16 25 H -0.24 -8.20 7.11 99.48 0.71 -7.50 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 27 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 29 H 0.03 0.85 7.22 -2.38 -0.02 0.83 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.68 3.14 -2.39 -0.01 1.67 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 1.78 7.21 -2.39 -0.02 1.76 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 2.33 7.63 -2.39 -0.02 2.32 16 40 H 0.07 2.77 6.46 -2.39 -0.02 2.75 16 41 H 0.12 4.86 6.38 -2.91 -0.02 4.84 16 42 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.12 6.02 6.13 -2.91 -0.02 6.00 16 45 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 Total: -1.00 -66.10 346.94 1.58 -64.53 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 1.01 Total: 36.65 kcal Atomic # 6 Polarization: -75.00 SS G_CDS: 4.03 Total: -70.98 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.23 Total: -78.83 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -4.01 Total: -112.52 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: 122.71 SS G_CDS: -0.25 Total: 122.47 kcal Total: -66.10 1.58 -64.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.836 kcal (2) G-P(sol) polarization free energy of solvation -66.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds