Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00208 * 2 1 4 4 H 1.08997 * 110.05086 * 28.58274 * 3 2 1 5 5 C 1.54087 * 110.15966 * 267.11495 * 3 2 1 6 6 C 1.54261 * 106.62284 * 240.87929 * 5 3 2 7 7 C 1.54891 * 104.19469 * 336.27847 * 6 5 3 8 8 C 1.54262 * 110.03385 * 149.99773 * 3 2 1 9 9 H 1.08999 * 110.48562 * 24.08470 * 8 3 2 10 10 S 1.81395 * 110.48757 * 261.57509 * 8 3 2 11 11 O 1.42104 * 110.54270 * 311.50918 * 10 8 3 12 12 O 1.42100 * 110.54509 * 174.76380 * 10 8 3 13 13 N 1.65597 * 104.45011 * 63.13569 * 10 8 3 14 14 C 1.46500 * 119.99994 * 63.67319 * 13 10 8 15 15 C 1.50696 * 109.47292 * 163.41492 * 14 13 10 16 16 C 1.38638 * 119.74555 * 89.99784 * 15 14 13 17 17 C 1.37621 * 120.24615 * 180.02562 * 16 15 14 18 18 C 1.40715 * 119.74775 * 359.97438 * 17 16 15 19 19 C 1.41394 * 120.24429 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00299 * 25.35320 * 19 18 17 21 21 C 1.39952 * 119.99677 * 205.34987 * 19 18 17 22 22 N 1.30824 * 120.00155 * 17.80772 * 21 19 18 23 23 Si 1.86800 * 119.99551 * 197.81207 * 21 19 18 24 24 H 1.48496 * 109.47196 * 265.02560 * 23 21 19 25 25 H 1.48496 * 109.47369 * 25.02934 * 23 21 19 26 26 H 1.48508 * 109.46810 * 145.03049 * 23 21 19 27 27 C 1.40711 * 119.50810 * 0.27802 * 18 17 16 28 28 C 1.37619 * 119.74748 * 359.43975 * 27 18 17 29 29 H 1.09005 * 109.47164 * 60.00374 * 1 2 3 30 30 H 1.09000 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47631 * 300.00246 * 1 2 3 32 32 H 1.09005 * 110.11471 * 121.53511 * 5 3 2 33 33 H 1.09001 * 109.97097 * 0.14379 * 5 3 2 34 34 H 1.09002 * 110.48900 * 217.60551 * 6 5 3 35 35 H 1.09004 * 110.48864 * 94.95511 * 6 5 3 36 36 H 1.08995 * 110.76154 * 279.62949 * 7 6 5 37 37 H 1.09005 * 110.75868 * 156.25224 * 7 6 5 38 38 H 0.96999 * 119.99905 * 243.66413 * 13 10 8 39 39 H 1.09002 * 109.47301 * 43.41541 * 14 13 10 40 40 H 1.08997 * 109.46781 * 283.41654 * 14 13 10 41 41 H 1.07998 * 119.87776 * 0.02562 * 16 15 14 42 42 H 1.08006 * 120.12745 * 180.02562 * 17 16 15 43 43 H 0.96995 * 120.00023 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.12861 * 179.72674 * 27 18 17 45 45 H 1.08004 * 119.88137 * 180.27457 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3408 2.0126 0.4899 5 6 2.2927 1.7610 -1.4446 6 6 3.8151 1.9888 -1.5458 7 6 4.2568 2.2571 -0.0856 8 6 3.3717 1.2777 0.7247 9 1 3.7951 0.2735 0.7027 10 16 3.1919 1.8519 2.4359 11 8 2.4552 3.0662 2.4797 12 8 4.4186 1.7136 3.1398 13 7 2.1884 0.7396 3.1417 14 6 2.6167 -0.6554 3.2710 15 6 1.7432 -1.3578 4.2782 16 6 0.5843 -1.9931 3.8593 17 6 -0.2212 -2.6373 4.7704 18 6 0.1355 -2.6499 6.1315 19 6 -0.6842 -3.3089 7.0765 20 1 -1.3246 -4.1201 6.7633 21 6 -0.6654 -2.9101 8.4179 22 7 -0.1812 -1.7398 8.7456 23 14 -1.3316 -4.0490 9.7402 24 1 -2.7472 -3.7023 10.0248 25 1 -1.2514 -5.4549 9.2690 26 1 -0.5258 -3.8950 10.9781 27 6 1.3111 -1.9971 6.5459 28 6 2.1047 -1.3643 5.6166 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7614 2.6891 -1.6557 33 1 1.9837 0.9863 -2.1464 34 1 4.0306 2.8528 -2.1743 35 1 4.3089 1.0989 -1.9363 36 1 4.0497 3.2891 0.1972 37 1 5.3132 2.0234 0.0475 38 1 1.3170 1.0119 3.4696 39 1 3.6539 -0.6876 3.6045 40 1 2.5299 -1.1530 2.3051 41 1 0.3127 -1.9826 2.8141 42 1 -1.1234 -3.1320 4.4419 43 1 -0.1685 -1.4633 9.6753 44 1 1.5922 -1.9967 7.5888 45 1 3.0098 -0.8664 5.9317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601451573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -112.411940 kcal Electronic energy + Delta-G solvation = -27786.448773 eV Core-core repulsion = 23895.124560 eV Total energy + Delta-G solvation = -3891.324213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.31003 -37.83421 -36.97586 -36.20498 -35.83490 -34.99265 -33.34473 -30.04173 -29.51523 -29.30461 -28.59134 -26.52374 -26.26271 -23.53750 -21.70042 -21.03510 -20.91703 -20.09164 -19.08165 -17.82420 -17.35181 -17.18833 -16.95068 -15.89964 -15.52466 -15.35479 -15.23024 -14.62399 -14.21188 -14.08932 -13.93966 -13.92346 -13.57773 -13.29233 -12.69567 -12.58600 -12.35788 -12.20717 -12.10345 -11.99464 -11.95868 -11.89067 -11.66730 -11.54651 -11.52979 -11.25450 -11.13096 -11.00948 -10.85147 -10.72416 -10.50572 -10.46295 -9.78673 -9.70673 -9.43953 -9.21721 -8.98951 -7.52023 -7.40106 -6.83039 -4.42188 0.33226 2.56198 2.91622 3.02369 3.04524 3.08750 3.23451 3.40049 3.77757 3.88301 3.97591 4.15054 4.44937 4.53844 4.58905 4.81165 4.88148 5.01226 5.11322 5.21613 5.24857 5.35447 5.42715 5.48466 5.58416 5.61733 5.62514 5.66420 5.73502 5.85551 5.87024 6.13690 6.27120 6.38120 6.46931 6.90847 6.96904 7.01113 7.21895 7.28620 7.37952 7.55782 7.79693 7.99497 8.06328 8.23553 8.58006 8.82590 8.90785 10.11319 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.002782 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.249428 B =10063.854029 C =10839.971000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.372 6.372 3 C 0.112 3.888 4 H 0.077 0.923 5 C -0.143 4.143 6 C -0.111 4.111 7 C -0.106 4.106 8 C -0.602 4.602 9 H 0.152 0.848 10 S 2.608 3.392 11 O -0.966 6.966 12 O -0.957 6.957 13 N -1.102 6.102 14 C 0.180 3.820 15 C -0.230 4.230 16 C -0.071 4.071 17 C -0.230 4.230 18 C 0.116 3.884 19 C -0.460 4.460 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.788 5.788 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.260 1.260 26 H -0.275 1.275 27 C -0.168 4.168 28 C -0.082 4.082 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.417 0.583 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.282 0.718 44 H 0.117 0.883 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 5.882 -17.078 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.053 3.947 4 H 0.095 0.905 5 C -0.182 4.182 6 C -0.149 4.149 7 C -0.145 4.145 8 C -0.710 4.710 9 H 0.170 0.830 10 S 2.701 3.299 11 O -0.956 6.956 12 O -0.946 6.946 13 N -0.863 5.863 14 C 0.056 3.944 15 C -0.233 4.233 16 C -0.090 4.090 17 C -0.250 4.250 18 C 0.113 3.887 19 C -0.489 4.489 20 H 0.096 0.904 21 C -0.143 4.143 22 N -0.412 5.412 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.184 1.184 26 H -0.200 1.200 27 C -0.188 4.188 28 C -0.101 4.101 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.252 0.748 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.135 0.865 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.184 6.573 -16.528 18.527 hybrid contribution -1.093 -0.619 0.361 1.307 sum 4.091 5.955 -16.167 17.708 Atomic orbital electron populations 1.22876 0.80433 1.03426 1.00211 1.87967 1.20079 1.26123 1.94867 1.22316 0.90970 0.85865 0.95585 0.90515 1.22699 0.97056 1.01941 0.96495 1.22229 0.95207 1.02080 0.95396 1.22305 0.99261 0.97293 0.95662 1.31629 1.03652 1.12029 1.23722 0.83042 1.05038 0.74561 0.73885 0.76452 1.93570 1.71789 1.43631 1.86598 1.93592 1.46297 1.86391 1.68362 1.55672 1.33450 1.22239 1.74970 1.19964 0.97414 0.78886 0.98117 1.18876 1.00289 1.10649 0.93509 1.20385 0.94162 0.97452 0.96996 1.20959 1.00931 1.08862 0.94210 1.17659 0.90634 0.88950 0.91435 1.19632 1.21384 1.15830 0.92056 0.90363 1.25941 0.93715 0.94614 1.00030 1.69823 1.34357 1.16925 1.20139 0.86313 0.79283 0.81531 0.79713 1.19560 1.18385 1.19974 1.21296 0.95227 1.03401 0.98833 1.20612 0.98240 0.98616 0.92645 0.94164 0.89078 0.93251 0.90821 0.90149 0.90837 0.90795 0.90223 0.89196 0.74752 0.91553 0.92176 0.89284 0.89041 0.90728 0.86530 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.37 -4.24 10.27 -35.23 -0.36 -4.61 16 3 C 0.11 1.17 2.96 -25.50 -0.08 1.10 16 4 H 0.08 0.81 6.98 -51.93 -0.36 0.45 16 5 C -0.14 -1.20 6.62 -25.50 -0.17 -1.37 16 6 C -0.11 -0.83 6.83 -25.07 -0.17 -1.00 16 7 C -0.11 -0.93 6.34 -24.74 -0.16 -1.09 16 8 C -0.60 -6.47 3.18 -25.07 -0.08 -6.55 16 9 H 0.15 1.52 8.08 -51.93 -0.42 1.10 16 10 S 2.61 37.28 4.89 -107.50 -0.53 36.75 16 11 O -0.97 -15.78 17.47 -57.54 -1.01 -16.78 16 12 O -0.96 -16.69 17.53 -57.54 -1.01 -17.70 16 13 N -1.10 -16.86 5.86 -11.66 -0.07 -16.93 16 14 C 0.18 2.96 6.23 -5.20 -0.03 2.93 16 15 C -0.23 -4.67 5.30 -104.33 -0.55 -5.23 16 16 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 17 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 18 C 0.12 2.99 5.57 -106.83 -0.59 2.39 16 19 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 20 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 21 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 22 N -0.79 -20.03 11.00 55.55 0.61 -19.42 16 23 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.17 -4.26 8.69 -38.87 -0.34 -4.60 16 28 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.42 6.45 8.62 -34.47 -0.30 6.15 16 39 H 0.07 1.09 7.64 -51.93 -0.40 0.69 16 40 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 43 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 44 H 0.12 3.08 6.21 -52.48 -0.33 2.75 16 45 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -30.79 382.76 -11.10 -41.90 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.83 Total: 10.10 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: -2.65 Total: -32.31 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.54 Total: -36.35 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -2.38 Total: -39.09 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 37.28 SS G_CDS: -0.53 Total: 36.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.79 -11.10 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601451573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.517 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds