Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00208 * 2 1 4 4 H 1.08997 * 110.05086 * 28.58274 * 3 2 1 5 5 C 1.54087 * 110.15966 * 267.11495 * 3 2 1 6 6 C 1.54261 * 106.62284 * 240.87929 * 5 3 2 7 7 C 1.54891 * 104.19469 * 336.27847 * 6 5 3 8 8 C 1.54262 * 110.03385 * 149.99773 * 3 2 1 9 9 H 1.08999 * 110.48562 * 24.08470 * 8 3 2 10 10 S 1.81395 * 110.48757 * 261.57509 * 8 3 2 11 11 O 1.42104 * 110.54270 * 311.50918 * 10 8 3 12 12 O 1.42100 * 110.54509 * 174.76380 * 10 8 3 13 13 N 1.65597 * 104.45011 * 63.13569 * 10 8 3 14 14 C 1.46500 * 119.99994 * 63.67319 * 13 10 8 15 15 C 1.50696 * 109.47292 * 163.41492 * 14 13 10 16 16 C 1.38638 * 119.74555 * 89.99784 * 15 14 13 17 17 C 1.37621 * 120.24615 * 180.02562 * 16 15 14 18 18 C 1.40715 * 119.74775 * 359.97438 * 17 16 15 19 19 C 1.41394 * 120.24429 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00299 * 25.35320 * 19 18 17 21 21 C 1.39952 * 119.99677 * 205.34987 * 19 18 17 22 22 N 1.30824 * 120.00155 * 17.80772 * 21 19 18 23 23 Si 1.86800 * 119.99551 * 197.81207 * 21 19 18 24 24 H 1.48496 * 109.47196 * 265.02560 * 23 21 19 25 25 H 1.48496 * 109.47369 * 25.02934 * 23 21 19 26 26 H 1.48508 * 109.46810 * 145.03049 * 23 21 19 27 27 C 1.40711 * 119.50810 * 0.27802 * 18 17 16 28 28 C 1.37619 * 119.74748 * 359.43975 * 27 18 17 29 29 H 1.09005 * 109.47164 * 60.00374 * 1 2 3 30 30 H 1.09000 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47631 * 300.00246 * 1 2 3 32 32 H 1.09005 * 110.11471 * 121.53511 * 5 3 2 33 33 H 1.09001 * 109.97097 * 0.14379 * 5 3 2 34 34 H 1.09002 * 110.48900 * 217.60551 * 6 5 3 35 35 H 1.09004 * 110.48864 * 94.95511 * 6 5 3 36 36 H 1.08995 * 110.76154 * 279.62949 * 7 6 5 37 37 H 1.09005 * 110.75868 * 156.25224 * 7 6 5 38 38 H 0.96999 * 119.99905 * 243.66413 * 13 10 8 39 39 H 1.09002 * 109.47301 * 43.41541 * 14 13 10 40 40 H 1.08997 * 109.46781 * 283.41654 * 14 13 10 41 41 H 1.07998 * 119.87776 * 0.02562 * 16 15 14 42 42 H 1.08006 * 120.12745 * 180.02562 * 17 16 15 43 43 H 0.96995 * 120.00023 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.12861 * 179.72674 * 27 18 17 45 45 H 1.08004 * 119.88137 * 180.27457 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3408 2.0126 0.4899 5 6 2.2927 1.7610 -1.4446 6 6 3.8151 1.9888 -1.5458 7 6 4.2568 2.2571 -0.0856 8 6 3.3717 1.2777 0.7247 9 1 3.7951 0.2735 0.7027 10 16 3.1919 1.8519 2.4359 11 8 2.4552 3.0662 2.4797 12 8 4.4186 1.7136 3.1398 13 7 2.1884 0.7396 3.1417 14 6 2.6167 -0.6554 3.2710 15 6 1.7432 -1.3578 4.2782 16 6 0.5843 -1.9931 3.8593 17 6 -0.2212 -2.6373 4.7704 18 6 0.1355 -2.6499 6.1315 19 6 -0.6842 -3.3089 7.0765 20 1 -1.3246 -4.1201 6.7633 21 6 -0.6654 -2.9101 8.4179 22 7 -0.1812 -1.7398 8.7456 23 14 -1.3316 -4.0490 9.7402 24 1 -2.7472 -3.7023 10.0248 25 1 -1.2514 -5.4549 9.2690 26 1 -0.5258 -3.8950 10.9781 27 6 1.3111 -1.9971 6.5459 28 6 2.1047 -1.3643 5.6166 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7614 2.6891 -1.6557 33 1 1.9837 0.9863 -2.1464 34 1 4.0306 2.8528 -2.1743 35 1 4.3089 1.0989 -1.9363 36 1 4.0497 3.2891 0.1972 37 1 5.3132 2.0234 0.0475 38 1 1.3170 1.0119 3.4696 39 1 3.6539 -0.6876 3.6045 40 1 2.5299 -1.1530 2.3051 41 1 0.3127 -1.9826 2.8141 42 1 -1.1234 -3.1320 4.4419 43 1 -0.1685 -1.4633 9.6753 44 1 1.5922 -1.9967 7.5888 45 1 3.0098 -0.8664 5.9317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601451573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -132.733293 kcal Electronic energy + Delta-G solvation = -27787.329973 eV Core-core repulsion = 23895.124560 eV Total energy + Delta-G solvation = -3892.205413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.07209 -39.57615 -38.22661 -37.11890 -36.91665 -36.51661 -35.02450 -31.76978 -31.11236 -30.25705 -29.30371 -28.18350 -27.00090 -25.17393 -22.86104 -22.52506 -21.81519 -21.57985 -20.20090 -19.21013 -18.85003 -18.28648 -17.87096 -17.21857 -17.02792 -16.36049 -16.10849 -15.88749 -15.66600 -15.57513 -15.16431 -14.91784 -14.69263 -14.29481 -14.09891 -13.88837 -13.78762 -13.72564 -13.35792 -13.30637 -13.17661 -13.12453 -12.81718 -12.76265 -12.70471 -12.37697 -12.33564 -12.16870 -12.09792 -11.92856 -11.63207 -11.46574 -11.44580 -11.23770 -11.02106 -10.55448 -10.26147 -9.35454 -9.23256 -8.65089 -6.34268 -0.79028 0.89641 1.17624 1.37572 1.44837 1.52825 1.82270 2.19905 2.57965 2.72171 2.78617 3.07828 3.35267 3.51418 3.75791 3.82984 4.05332 4.09827 4.21009 4.32307 4.38580 4.40095 4.54727 4.56540 4.57669 4.66216 4.70860 4.74425 4.78794 4.89645 4.96285 5.07657 5.10642 5.12613 5.15612 5.16290 5.31542 5.39797 5.46318 5.72426 5.95460 6.10339 6.11981 6.20206 6.25774 6.39731 6.71471 6.94192 7.04443 8.31790 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.002782 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.249428 B =10063.854029 C =10839.971000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.385 6.385 3 C 0.103 3.897 4 H 0.072 0.928 5 C -0.142 4.142 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.578 4.578 9 H 0.166 0.834 10 S 2.612 3.388 11 O -0.990 6.990 12 O -0.994 6.994 13 N -1.108 6.108 14 C 0.186 3.814 15 C -0.214 4.214 16 C -0.065 4.065 17 C -0.242 4.242 18 C 0.083 3.917 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.825 5.825 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.257 1.257 26 H -0.268 1.268 27 C -0.194 4.194 28 C -0.092 4.092 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.287 0.713 44 H 0.095 0.905 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 5.911 -19.933 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.303 6.303 3 C 0.044 3.956 4 H 0.090 0.910 5 C -0.180 4.180 6 C -0.145 4.145 7 C -0.154 4.154 8 C -0.691 4.691 9 H 0.184 0.816 10 S 2.710 3.290 11 O -0.981 6.981 12 O -0.984 6.984 13 N -0.868 5.868 14 C 0.061 3.939 15 C -0.217 4.217 16 C -0.083 4.083 17 C -0.261 4.261 18 C 0.081 3.919 19 C -0.528 4.528 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.451 5.451 23 Si 0.801 3.199 24 H -0.187 1.187 25 H -0.181 1.181 26 H -0.193 1.193 27 C -0.213 4.213 28 C -0.111 4.111 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.250 0.750 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.505 6.611 -19.338 21.165 hybrid contribution -1.115 -0.520 1.020 1.598 sum 4.390 6.091 -18.318 19.797 Atomic orbital electron populations 1.23002 0.79767 1.04029 1.00785 1.87930 1.20870 1.26506 1.95040 1.22492 0.90399 0.85709 0.97000 0.90958 1.22717 0.97962 1.02603 0.94767 1.22264 0.94385 1.03364 0.94441 1.22530 0.99771 0.96873 0.96266 1.31386 1.05043 1.13124 1.19541 0.81643 1.04739 0.73225 0.73237 0.77807 1.93535 1.72114 1.44772 1.87634 1.93544 1.47392 1.86668 1.70795 1.55487 1.33308 1.21744 1.76217 1.19932 0.96489 0.79238 0.98232 1.19263 1.00148 1.09055 0.93269 1.20722 0.93369 0.95849 0.98391 1.21193 1.01799 1.09320 0.93811 1.17995 0.91100 0.89937 0.92885 1.19870 1.22694 1.16820 0.93426 0.90485 1.26777 0.93727 0.95781 1.01819 1.69887 1.35856 1.18494 1.20857 0.85219 0.78807 0.79191 0.76663 1.18703 1.18113 1.19297 1.21226 0.96302 1.05363 0.98433 1.20822 0.98276 0.98391 0.93645 0.92436 0.88492 0.93947 0.89676 0.89637 0.88862 0.90047 0.89955 0.87716 0.74958 0.91418 0.89233 0.85548 0.88256 0.90230 0.88738 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.38 -7.55 10.27 -148.98 -1.53 -9.07 16 3 C 0.10 1.86 2.96 31.39 0.09 1.95 16 4 H 0.07 1.37 6.98 -2.39 -0.02 1.36 16 5 C -0.14 -1.85 6.62 31.39 0.21 -1.64 16 6 C -0.11 -1.16 6.83 31.67 0.22 -0.94 16 7 C -0.12 -1.65 6.34 31.89 0.20 -1.45 16 8 C -0.58 -10.79 3.18 31.67 0.10 -10.69 16 9 H 0.17 2.71 8.08 -2.39 -0.02 2.69 16 10 S 2.61 71.55 4.89 -56.49 -0.28 71.28 16 11 O -0.99 -31.75 17.47 -127.65 -2.23 -33.98 16 12 O -0.99 -34.05 17.53 -127.65 -2.24 -36.29 16 13 N -1.11 -32.46 5.86 -190.80 -1.12 -33.58 16 14 C 0.19 5.71 6.23 85.63 0.53 6.25 16 15 C -0.21 -8.49 5.30 -19.68 -0.10 -8.60 16 16 C -0.06 -2.56 9.67 22.22 0.21 -2.35 16 17 C -0.24 -11.29 9.80 22.73 0.22 -11.07 16 18 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 19 C -0.50 -26.77 9.05 23.46 0.21 -26.56 16 20 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 21 C 0.03 1.72 5.14 85.26 0.44 2.16 16 22 N -0.83 -43.82 11.00 21.83 0.24 -43.58 16 23 Si 0.98 38.37 29.59 68.60 2.03 40.40 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 26 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 27 C -0.19 -10.25 8.69 22.73 0.20 -10.05 16 28 C -0.09 -4.27 9.67 22.22 0.21 -4.05 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 0.76 8.10 -2.38 -0.02 0.74 16 32 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.08 1.06 7.96 -2.39 -0.02 1.04 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.42 12.54 8.62 -96.75 -0.83 11.70 16 39 H 0.07 2.10 7.64 -2.39 -0.02 2.08 16 40 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 41 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 44 H 0.09 5.32 6.21 -2.91 -0.02 5.30 16 45 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -68.85 382.76 -1.10 -69.95 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.16 Total: 36.03 kcal Atomic # 6 Polarization: -65.01 SS G_CDS: 3.86 Total: -61.15 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -0.88 Total: -77.15 kcal Atomic # 8 Polarization: -73.35 SS G_CDS: -6.00 Total: -79.35 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 16 Polarization: 71.55 SS G_CDS: -0.28 Total: 71.28 kcal Total: -68.85 -1.10 -69.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601451573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.785 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds