Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99986 * 2 1 4 4 C 1.53001 * 109.46986 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47305 * 65.00085 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00061 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00225 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46861 * 89.99972 * 11 9 7 13 13 H 1.48498 * 109.47453 * 210.00313 * 11 9 7 14 14 H 1.48505 * 109.46941 * 330.00240 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 S 1.81404 * 109.47098 * 179.97438 * 17 15 5 19 19 C 1.76192 * 102.99967 * 179.97438 * 18 17 15 20 20 C 1.39038 * 120.05602 * 359.72552 * 19 18 17 21 21 C 1.38088 * 120.03180 * 179.70170 * 20 19 18 22 22 C 1.38236 * 120.13665 * 0.59323 * 21 20 19 23 23 C 1.38785 * 120.10116 * 359.68494 * 22 21 20 24 24 O 1.35896 * 120.01532 * 180.02562 * 23 22 21 25 25 C 1.42898 * 117.00043 * 0.02562 * 24 23 22 26 26 C 1.38601 * 119.97041 * 0.02562 * 23 22 21 27 27 H 1.09002 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47355 * 300.00190 * 1 2 3 29 29 H 1.09002 * 109.47554 * 59.99782 * 1 2 3 30 30 H 1.08998 * 109.46935 * 60.00247 * 3 2 1 31 31 H 1.08997 * 109.47566 * 300.00111 * 3 2 1 32 32 H 1.09006 * 109.47320 * 304.99966 * 4 3 2 33 33 H 1.09002 * 109.47139 * 185.00192 * 4 3 2 34 34 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 35 35 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 36 36 H 0.96997 * 120.00410 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 38 38 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 39 39 H 1.08001 * 119.98239 * 359.97438 * 20 19 18 40 40 H 1.08007 * 119.93450 * 180.29915 * 21 20 19 41 41 H 1.08001 * 119.94680 * 179.70040 * 22 21 20 42 42 H 1.08997 * 109.47505 * 60.00039 * 25 24 23 43 43 H 1.08997 * 109.47068 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.46994 * 299.99787 * 25 24 23 45 45 H 1.07995 * 120.06586 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1051 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2197 -0.5459 -0.6545 9 6 5.8603 -2.6289 -0.9518 10 7 7.0781 -2.9830 -0.6042 11 14 4.6168 -3.9295 -1.4536 12 1 4.7009 -4.1555 -2.9189 13 1 4.9112 -5.1977 -0.7393 14 1 3.2495 -3.4690 -1.1014 15 6 4.2614 1.3338 -2.3218 16 8 4.6263 0.8204 -3.3582 17 6 4.1286 2.8320 -2.2290 18 16 4.5818 3.5789 -3.8188 19 6 4.3680 5.3025 -3.5223 20 6 3.9358 5.7466 -2.2777 21 6 3.7743 7.0979 -2.0440 22 6 4.0299 8.0116 -3.0494 23 6 4.4560 7.5741 -4.2956 24 8 4.7072 8.4738 -5.2826 25 6 4.5122 9.8539 -4.9675 26 6 4.6253 6.2191 -4.5332 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.3852 -1.3629 -0.6734 35 1 3.9119 -1.2114 -2.3669 36 1 7.3308 -3.9195 -0.6087 37 1 3.0981 3.0911 -1.9861 38 1 4.7912 3.2080 -1.4494 39 1 3.7305 5.0346 -1.4920 40 1 3.4431 7.4415 -1.0751 41 1 3.8979 9.0675 -2.8647 42 1 5.1667 10.1342 -4.1422 43 1 4.7468 10.4627 -5.8406 44 1 3.4738 10.0175 -4.6794 45 1 4.9572 5.8770 -5.5022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -77.586142 kcal Electronic energy + Delta-G solvation = -26621.419860 eV Core-core repulsion = 22731.605807 eV Total energy + Delta-G solvation = -3889.814053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26145 -39.35098 -37.67818 -37.57568 -35.07144 -32.68564 -31.36119 -31.01275 -30.12135 -29.50783 -27.61709 -27.20660 -26.11301 -23.20064 -22.83395 -22.43664 -22.18349 -19.06166 -18.46564 -17.10170 -16.95741 -16.64837 -16.43086 -16.22052 -16.03628 -15.90020 -15.73458 -15.32087 -14.97172 -14.57056 -14.14694 -14.09373 -13.94038 -13.51748 -13.28301 -13.11825 -12.69358 -12.57469 -12.44662 -12.11873 -12.02087 -11.86268 -11.78553 -11.55623 -11.51457 -11.31086 -11.03220 -10.88018 -10.42229 -10.12063 -10.08001 -9.85648 -9.62375 -9.51861 -9.23251 -8.55480 -8.53199 -7.81035 -7.40899 -6.03920 -4.02341 0.98093 1.19429 1.30584 2.37282 3.02723 3.11015 3.34873 3.40852 3.44651 3.46102 3.67102 3.86600 4.45678 4.51060 4.67199 4.75864 4.76687 4.80208 4.87942 4.91256 5.09227 5.11065 5.14112 5.16011 5.28361 5.29451 5.31333 5.34683 5.39812 5.44059 5.49813 5.65685 5.69660 5.97696 6.07202 6.07805 6.16271 6.35076 6.82366 7.01428 7.11520 7.22644 7.27398 7.66378 8.12279 8.48656 8.78220 8.98613 9.56512 11.09376 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002651 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.500910 B =10558.570141 C =11687.577014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.042 3.958 4 C 0.109 3.891 5 N -0.577 5.577 6 C 0.221 3.779 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.523 3.477 16 O -0.518 6.518 17 C -0.152 4.152 18 S -0.015 6.015 19 C -0.059 4.059 20 C -0.175 4.175 21 C -0.059 4.059 22 C -0.221 4.221 23 C 0.145 3.855 24 O -0.316 6.316 25 C 0.028 3.972 26 C -0.136 4.136 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.260 23.900 -0.245 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.036 4.036 4 C -0.016 4.016 5 N -0.308 5.308 6 C 0.100 3.900 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.307 3.693 16 O -0.395 6.395 17 C -0.303 4.303 18 S 0.231 5.769 19 C -0.173 4.173 20 C -0.200 4.200 21 C -0.079 4.079 22 C -0.243 4.243 23 C 0.098 3.902 24 O -0.230 6.230 25 C -0.067 4.067 26 C -0.161 4.161 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.406 22.486 -1.942 25.288 hybrid contribution -1.251 0.515 1.362 1.920 sum -12.656 23.001 -0.579 26.260 Atomic orbital electron populations 1.22721 0.81788 1.02672 0.99371 1.88063 1.18962 1.27031 1.95192 1.23135 0.95130 0.85512 0.99792 1.21605 0.91225 0.99338 0.89413 1.47756 1.64365 1.08964 1.09762 1.19748 0.97907 0.74182 0.98115 1.21332 0.96042 0.93591 1.45785 0.90843 1.24819 0.95167 0.98343 0.94581 1.69893 1.18171 1.17269 1.48375 0.86879 0.82455 0.81363 0.79280 1.19998 1.21175 1.18634 1.19298 0.79005 0.86266 0.84684 1.90734 1.45785 1.73919 1.29020 1.24026 1.06307 0.98993 1.00962 1.86423 1.82845 0.92410 1.15229 1.22006 1.00070 0.99066 0.96149 1.21104 1.06071 0.96581 0.96224 1.20813 0.96398 0.92360 0.98333 1.21186 1.09111 1.00380 0.93608 1.18813 0.94828 0.89213 0.87364 1.86080 1.83494 1.16480 1.36921 1.23059 1.01184 0.79644 1.02833 1.19859 1.07141 0.89124 0.99963 0.89765 0.94437 0.94437 0.92617 0.93681 0.88281 0.89814 0.93645 0.94793 0.92621 0.87248 0.86736 0.85757 0.85544 0.85472 0.92581 0.88219 0.92637 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.76 9.53 -35.23 -0.34 -6.10 16 3 C 0.04 0.53 6.28 37.16 0.23 0.76 16 4 C 0.11 1.60 5.62 -4.05 -0.02 1.58 16 5 N -0.58 -11.57 2.42 -175.06 -0.42 -11.99 16 6 C 0.22 5.44 4.05 -5.19 -0.02 5.42 16 7 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 11 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 12 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 15 C 0.52 10.42 7.69 -10.98 -0.08 10.34 16 16 O -0.52 -12.73 15.44 5.56 0.09 -12.64 16 17 C -0.15 -2.15 3.37 36.01 0.12 -2.03 16 18 S -0.01 -0.23 21.06 -107.50 -2.26 -2.49 16 19 C -0.06 -0.76 6.11 -39.05 -0.24 -1.00 16 20 C -0.18 -1.89 9.36 -39.34 -0.37 -2.26 16 21 C -0.06 -0.54 10.03 -39.64 -0.40 -0.94 16 22 C -0.22 -2.06 9.04 -39.38 -0.36 -2.41 16 23 C 0.14 1.62 6.68 -39.25 -0.26 1.35 16 24 O -0.32 -3.26 10.49 -19.41 -0.20 -3.46 16 25 C 0.03 0.16 9.81 101.05 0.99 1.16 16 26 C -0.14 -1.70 9.73 -39.22 -0.38 -2.08 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.52 7.30 -51.93 -0.38 0.14 16 32 H 0.10 1.58 8.07 -51.93 -0.42 1.16 16 33 H 0.08 0.93 6.44 -51.93 -0.33 0.60 16 34 H 0.05 1.11 6.17 -51.93 -0.32 0.79 16 35 H 0.03 0.91 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.11 1.23 6.85 -51.92 -0.36 0.87 16 38 H 0.11 1.39 7.02 -51.92 -0.36 1.03 16 39 H 0.12 1.13 5.87 -52.49 -0.31 0.82 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 41 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 42 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 45 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -36.67 384.69 -7.87 -44.54 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.51 Total: -1.60 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.11 Total: -2.18 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.35 Total: -39.19 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.45 Total: -22.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.26 Total: -2.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.67 -7.87 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.048 kcal (2) G-P(sol) polarization free energy of solvation -36.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds