Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99986 * 2 1 4 4 C 1.53001 * 109.46986 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47305 * 65.00085 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00061 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00225 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46861 * 89.99972 * 11 9 7 13 13 H 1.48498 * 109.47453 * 210.00313 * 11 9 7 14 14 H 1.48505 * 109.46941 * 330.00240 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 S 1.81404 * 109.47098 * 179.97438 * 17 15 5 19 19 C 1.76192 * 102.99967 * 179.97438 * 18 17 15 20 20 C 1.39038 * 120.05602 * 359.72552 * 19 18 17 21 21 C 1.38088 * 120.03180 * 179.70170 * 20 19 18 22 22 C 1.38236 * 120.13665 * 0.59323 * 21 20 19 23 23 C 1.38785 * 120.10116 * 359.68494 * 22 21 20 24 24 O 1.35896 * 120.01532 * 180.02562 * 23 22 21 25 25 C 1.42898 * 117.00043 * 0.02562 * 24 23 22 26 26 C 1.38601 * 119.97041 * 0.02562 * 23 22 21 27 27 H 1.09002 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47355 * 300.00190 * 1 2 3 29 29 H 1.09002 * 109.47554 * 59.99782 * 1 2 3 30 30 H 1.08998 * 109.46935 * 60.00247 * 3 2 1 31 31 H 1.08997 * 109.47566 * 300.00111 * 3 2 1 32 32 H 1.09006 * 109.47320 * 304.99966 * 4 3 2 33 33 H 1.09002 * 109.47139 * 185.00192 * 4 3 2 34 34 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 35 35 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 36 36 H 0.96997 * 120.00410 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 38 38 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 39 39 H 1.08001 * 119.98239 * 359.97438 * 20 19 18 40 40 H 1.08007 * 119.93450 * 180.29915 * 21 20 19 41 41 H 1.08001 * 119.94680 * 179.70040 * 22 21 20 42 42 H 1.08997 * 109.47505 * 60.00039 * 25 24 23 43 43 H 1.08997 * 109.47068 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.46994 * 299.99787 * 25 24 23 45 45 H 1.07995 * 120.06586 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1051 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2197 -0.5459 -0.6545 9 6 5.8603 -2.6289 -0.9518 10 7 7.0781 -2.9830 -0.6042 11 14 4.6168 -3.9295 -1.4536 12 1 4.7009 -4.1555 -2.9189 13 1 4.9112 -5.1977 -0.7393 14 1 3.2495 -3.4690 -1.1014 15 6 4.2614 1.3338 -2.3218 16 8 4.6263 0.8204 -3.3582 17 6 4.1286 2.8320 -2.2290 18 16 4.5818 3.5789 -3.8188 19 6 4.3680 5.3025 -3.5223 20 6 3.9358 5.7466 -2.2777 21 6 3.7743 7.0979 -2.0440 22 6 4.0299 8.0116 -3.0494 23 6 4.4560 7.5741 -4.2956 24 8 4.7072 8.4738 -5.2826 25 6 4.5122 9.8539 -4.9675 26 6 4.6253 6.2191 -4.5332 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.3852 -1.3629 -0.6734 35 1 3.9119 -1.2114 -2.3669 36 1 7.3308 -3.9195 -0.6087 37 1 3.0981 3.0911 -1.9861 38 1 4.7912 3.2080 -1.4494 39 1 3.7305 5.0346 -1.4920 40 1 3.4431 7.4415 -1.0751 41 1 3.8979 9.0675 -2.8647 42 1 5.1667 10.1342 -4.1422 43 1 4.7468 10.4627 -5.8406 44 1 3.4738 10.0175 -4.6794 45 1 4.9572 5.8770 -5.5022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = -102.944358 kcal Electronic energy + Delta-G solvation = -26622.519475 eV Core-core repulsion = 22731.605807 eV Total energy + Delta-G solvation = -3890.913668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99276 -40.87324 -38.76769 -38.31466 -36.64459 -34.81001 -32.32844 -32.12420 -31.31509 -30.58727 -28.96049 -28.10224 -27.08703 -24.50510 -24.03517 -23.66316 -23.14700 -20.32892 -19.48342 -19.12028 -18.35002 -17.80401 -17.29238 -17.08619 -16.95752 -16.91155 -16.70021 -16.64766 -16.24457 -15.86422 -15.62785 -14.98526 -14.85193 -14.72213 -14.47006 -14.34104 -14.11418 -13.79966 -13.70425 -13.38282 -13.11773 -13.02499 -12.87569 -12.70777 -12.61380 -12.45583 -12.15215 -12.05995 -11.99899 -11.94911 -11.73006 -11.11420 -10.89118 -10.81103 -10.68349 -10.52997 -9.48062 -9.33640 -8.48939 -8.32990 -6.36658 0.17197 0.21569 0.41202 1.32591 1.34774 1.35732 1.45865 1.61509 2.20325 2.31935 2.40378 2.67959 2.94886 3.02708 3.41968 3.84105 3.87330 3.98126 4.09915 4.16024 4.18762 4.25881 4.32870 4.41514 4.42810 4.47757 4.50826 4.55500 4.56357 4.63048 4.74810 4.87151 4.88319 4.92437 4.95786 4.98855 5.19274 5.30075 5.41602 5.46782 5.57410 5.65785 6.23010 6.31949 6.42941 6.60421 6.64316 7.17860 7.31307 8.83739 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002651 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.500910 B =10558.570141 C =11687.577014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.045 3.955 4 C 0.099 3.901 5 N -0.584 5.584 6 C 0.236 3.764 7 C -0.533 4.533 8 H 0.033 0.967 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.942 3.058 12 H -0.278 1.278 13 H -0.274 1.274 14 H -0.241 1.241 15 C 0.513 3.487 16 O -0.578 6.578 17 C -0.126 4.126 18 S -0.086 6.086 19 C -0.063 4.063 20 C -0.179 4.179 21 C -0.054 4.054 22 C -0.214 4.214 23 C 0.136 3.864 24 O -0.339 6.339 25 C 0.018 3.982 26 C -0.161 4.161 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.054 0.946 35 H 0.010 0.990 36 H 0.268 0.732 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.068 0.932 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.081 26.807 1.722 30.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.033 4.033 4 C -0.024 4.024 5 N -0.314 5.314 6 C 0.114 3.886 7 C -0.571 4.571 8 H 0.051 0.949 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.199 1.199 14 H -0.164 1.164 15 C 0.300 3.700 16 O -0.458 6.458 17 C -0.276 4.276 18 S 0.158 5.842 19 C -0.177 4.177 20 C -0.203 4.203 21 C -0.073 4.073 22 C -0.235 4.235 23 C 0.088 3.912 24 O -0.253 6.253 25 C -0.076 4.076 26 C -0.186 4.186 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.086 0.914 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.260 25.463 0.067 29.184 hybrid contribution -0.317 -0.177 0.757 0.840 sum -14.577 25.286 0.824 29.199 Atomic orbital electron populations 1.22867 0.79911 1.03191 1.00899 1.87993 1.21190 1.28952 1.95571 1.23196 0.92779 0.85006 1.02269 1.22021 0.93655 1.00556 0.86120 1.47791 1.64336 1.07339 1.11947 1.19258 0.95219 0.77749 0.96421 1.21577 0.97409 0.92943 1.45190 0.94915 1.25765 0.97237 1.00946 0.94573 1.70036 1.20379 1.18054 1.49963 0.85795 0.80681 0.78512 0.78498 1.20389 1.19862 1.16438 1.20198 0.77477 0.88691 0.83596 1.90702 1.48202 1.75613 1.31279 1.23836 1.09172 0.94007 1.00612 1.86713 1.84259 0.95976 1.17239 1.21790 1.01965 0.96481 0.97426 1.21426 1.05363 0.98001 0.95538 1.21256 0.94938 0.91437 0.99715 1.21587 1.07209 1.02153 0.92533 1.18925 0.95003 0.88791 0.88445 1.86056 1.83537 1.18302 1.37401 1.23382 1.02426 0.77516 1.04306 1.19917 1.08528 0.90387 0.99762 0.89951 0.91999 0.93694 0.88531 0.92463 0.90021 0.85691 0.92823 0.97176 0.92334 0.83389 0.84145 0.83740 0.81850 0.82459 0.91357 0.86581 0.91221 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.42 -11.89 9.53 -148.98 -1.42 -13.31 16 3 C 0.04 0.95 6.28 71.98 0.45 1.40 16 4 C 0.10 2.69 5.62 86.38 0.49 3.17 16 5 N -0.58 -23.28 2.42 -826.16 -2.00 -25.28 16 6 C 0.24 11.85 4.05 85.64 0.35 12.20 16 7 C -0.53 -31.89 9.94 25.60 0.25 -31.63 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 9 C 0.01 0.77 5.47 84.65 0.46 1.24 16 10 N -0.94 -60.74 13.96 21.45 0.30 -60.44 16 11 Si 0.94 46.26 27.47 68.60 1.88 48.15 16 12 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.24 -10.93 6.54 99.48 0.65 -10.28 16 15 C 0.51 20.57 7.69 87.66 0.67 21.24 16 16 O -0.58 -29.66 15.44 -3.03 -0.05 -29.71 16 17 C -0.13 -3.35 3.37 71.24 0.24 -3.11 16 18 S -0.09 -2.69 21.06 -56.49 -1.19 -3.88 16 19 C -0.06 -1.57 6.11 22.61 0.14 -1.43 16 20 C -0.18 -3.26 9.36 22.43 0.21 -3.05 16 21 C -0.05 -0.75 10.03 22.23 0.22 -0.52 16 22 C -0.21 -3.21 9.04 22.40 0.20 -3.01 16 23 C 0.14 2.84 6.68 22.49 0.15 2.99 16 24 O -0.34 -6.61 10.49 -92.38 -0.97 -7.58 16 25 C 0.02 0.16 9.81 113.37 1.11 1.28 16 26 C -0.16 -4.08 9.73 22.51 0.22 -3.86 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.08 7.30 -2.39 -0.02 1.06 16 32 H 0.08 2.52 8.07 -2.38 -0.02 2.50 16 33 H 0.13 2.29 6.44 -2.39 -0.02 2.27 16 34 H 0.05 2.61 6.17 -2.39 -0.01 2.59 16 35 H 0.01 0.56 6.85 -2.39 -0.02 0.54 16 36 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 37 H 0.15 2.75 6.85 -2.39 -0.02 2.74 16 38 H 0.14 2.98 7.02 -2.39 -0.02 2.97 16 39 H 0.14 1.94 5.87 -2.91 -0.02 1.92 16 40 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.16 1.35 6.29 -2.91 -0.02 1.33 16 42 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 43 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.44 7.66 -2.39 -0.02 0.43 16 45 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -87.06 384.69 3.92 -83.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.94 Total: 10.21 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 6.42 Total: -1.31 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -1.70 Total: -85.72 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -2.44 Total: -50.60 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.15 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -1.19 Total: -3.88 kcal Total: -87.06 3.92 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.803 kcal (2) G-P(sol) polarization free energy of solvation -87.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds