Wall clock time and date at job start Sat Apr 11 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99904 * 2 1 4 4 H 1.08998 * 110.02056 * 331.38369 * 3 2 1 5 5 C 1.53879 * 110.07943 * 92.80396 * 3 2 1 6 6 C 1.54266 * 106.59902 * 119.30412 * 5 3 2 7 7 C 1.55029 * 104.28200 * 23.51974 * 6 5 3 8 8 C 1.54273 * 110.02950 * 209.99590 * 3 2 1 9 9 H 1.09001 * 110.48406 * 335.86339 * 8 3 2 10 10 C 1.52994 * 110.48763 * 98.37474 * 8 3 2 11 11 N 1.46505 * 109.47260 * 183.16031 * 10 8 3 12 12 S 1.65600 * 120.00067 * 165.00253 * 11 10 8 13 13 O 1.42101 * 106.40001 * 178.54225 * 12 11 10 14 14 O 1.42104 * 106.39751 * 311.45665 * 12 11 10 15 15 C 1.76201 * 107.21903 * 64.99992 * 12 11 10 16 16 C 1.38659 * 119.87161 * 269.72509 * 15 12 11 17 17 C 1.38622 * 120.49684 * 179.72168 * 16 15 12 18 18 C 1.37635 * 120.24519 * 0.55395 * 17 16 15 19 19 C 1.40699 * 119.74786 * 359.72713 * 18 17 16 20 20 C 1.41392 * 120.24509 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00475 * 204.41291 * 20 19 18 22 22 C 1.39949 * 119.99881 * 24.41193 * 20 19 18 23 23 N 1.30824 * 120.00280 * 17.85205 * 22 20 19 24 24 Si 1.86801 * 119.99941 * 197.85178 * 22 20 19 25 25 H 1.48501 * 109.47463 * 89.99864 * 24 22 20 26 26 H 1.48503 * 109.47125 * 209.99859 * 24 22 20 27 27 H 1.48498 * 109.47176 * 330.00098 * 24 22 20 28 28 C 1.37588 * 119.87659 * 90.00000 * 15 12 11 29 29 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47335 * 300.01076 * 1 2 3 31 31 H 1.09006 * 109.46448 * 60.00345 * 1 2 3 32 32 H 1.09000 * 110.02954 * 238.59246 * 5 3 2 33 33 H 1.09007 * 110.02607 * 359.97165 * 5 3 2 34 34 H 1.09003 * 110.48348 * 142.29118 * 6 5 3 35 35 H 1.09003 * 110.48761 * 264.79908 * 6 5 3 36 36 H 1.08997 * 110.87733 * 203.90169 * 7 6 5 37 37 H 1.09002 * 110.69786 * 80.48040 * 7 6 5 38 38 H 1.09004 * 109.47309 * 63.15908 * 10 8 3 39 39 H 1.08998 * 109.47564 * 303.16199 * 10 8 3 40 40 H 0.97004 * 119.99378 * 344.99618 * 11 10 8 41 41 H 1.07996 * 119.75274 * 359.97438 * 16 15 12 42 42 H 1.08000 * 119.87195 * 180.27803 * 17 16 15 43 43 H 1.07998 * 120.12455 * 179.74193 * 18 17 16 44 44 H 0.96993 * 120.00071 * 180.02562 * 23 22 20 45 45 H 1.08005 * 120.12646 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3407 2.0120 -0.4905 5 6 2.2897 1.7593 1.4435 6 6 3.8114 1.9914 1.5457 7 6 4.2566 2.2581 0.0849 8 6 3.3719 1.2776 -0.7246 9 1 3.7957 0.2736 -0.7017 10 6 3.2202 1.7606 -2.1684 11 7 4.5089 1.6540 -2.8570 12 16 4.5753 1.7482 -4.5090 13 8 5.9480 1.6462 -4.8619 14 8 3.5783 0.8634 -5.0016 15 6 4.0650 3.3733 -4.9597 16 6 2.7259 3.6324 -5.2092 17 6 2.3093 4.9075 -5.5591 18 6 3.2248 5.9288 -5.6737 19 6 4.5870 5.6761 -5.4286 20 6 5.5365 6.7174 -5.5438 21 1 6.5711 6.4848 -5.7486 22 6 5.1357 8.0497 -5.3924 23 7 3.9969 8.3283 -4.8119 24 14 6.2268 9.4303 -6.0193 25 1 5.8703 9.7429 -7.4265 26 1 6.0289 10.6383 -5.1784 27 1 7.6487 9.0073 -5.9512 28 6 4.9976 4.3791 -5.0683 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.7557 2.6860 1.6535 33 1 1.9815 0.9839 2.1449 34 1 4.0239 2.8564 2.1740 35 1 4.3070 1.1040 1.9395 36 1 5.3129 2.0248 -0.0480 37 1 4.0489 3.2898 -0.1989 38 1 2.8915 2.7999 -2.1712 39 1 2.4819 1.1448 -2.6819 40 1 5.3233 1.5284 -2.3452 41 1 2.0014 2.8359 -5.1263 42 1 1.2632 5.0990 -5.7468 43 1 2.8987 6.9205 -5.9505 44 1 3.7190 9.2517 -4.7073 45 1 6.0407 4.1741 -4.8775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:22 Heat of formation + Delta-G solvation = -121.625207 kcal Electronic energy + Delta-G solvation = -27589.049960 eV Core-core repulsion = 23697.326229 eV Total energy + Delta-G solvation = -3891.723730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.46994 -37.65105 -36.70787 -36.46885 -35.27896 -34.46153 -33.85954 -30.09121 -29.79929 -29.51648 -28.36682 -26.45388 -25.50508 -24.03117 -21.90458 -21.00563 -20.74934 -20.30407 -19.00643 -17.95696 -17.21375 -17.01564 -16.00328 -15.85924 -15.53700 -15.29418 -15.15412 -14.79596 -14.48953 -14.32476 -14.16158 -13.55879 -13.48719 -13.34089 -12.86728 -12.59191 -12.28669 -12.13499 -11.90924 -11.62785 -11.59720 -11.53183 -11.40072 -11.38863 -11.34689 -11.24531 -11.00570 -10.89952 -10.78302 -10.75463 -10.62090 -10.59881 -9.79035 -9.71824 -9.65351 -9.37282 -9.12505 -8.05287 -7.72147 -6.94717 -4.55237 1.05158 2.18857 2.61657 2.98743 3.02936 3.05575 3.50498 3.68705 3.81510 4.24778 4.36170 4.38055 4.45151 4.71594 4.96160 5.09190 5.15243 5.15800 5.19420 5.26993 5.32456 5.39759 5.46051 5.46392 5.54915 5.68611 5.73671 5.83632 5.87569 5.98407 5.99196 6.03824 6.13206 6.17254 6.30241 6.64357 6.74803 6.83874 7.01713 7.08775 7.19213 7.25414 7.37489 7.71361 7.79712 7.92885 8.38968 8.65374 8.70380 10.00726 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.003260 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.043230 B = 8585.891061 C = 9351.181096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.382 6.382 3 C 0.088 3.912 4 H 0.070 0.930 5 C -0.146 4.146 6 C -0.121 4.121 7 C -0.123 4.123 8 C -0.095 4.095 9 H 0.095 0.905 10 C 0.127 3.873 11 N -1.119 6.119 12 S 2.690 3.310 13 O -0.973 6.973 14 O -0.975 6.975 15 C -0.631 4.631 16 C -0.150 4.150 17 C -0.121 4.121 18 C -0.119 4.119 19 C 0.092 3.908 20 C -0.460 4.460 21 H 0.083 0.917 22 C 0.075 3.925 23 N -0.794 5.794 24 Si 0.912 3.088 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.260 1.260 28 C -0.123 4.123 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.413 0.587 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.283 0.717 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -8.091 11.594 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C 0.029 3.971 4 H 0.088 0.912 5 C -0.183 4.183 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.115 4.115 9 H 0.113 0.887 10 C 0.001 3.999 11 N -0.877 5.877 12 S 2.785 3.215 13 O -0.964 6.964 14 O -0.965 6.965 15 C -0.723 4.723 16 C -0.171 4.171 17 C -0.140 4.140 18 C -0.139 4.139 19 C 0.088 3.912 20 C -0.490 4.490 21 H 0.101 0.899 22 C -0.143 4.143 23 N -0.419 5.419 24 Si 0.736 3.264 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.184 1.184 28 C -0.144 4.144 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.247 0.753 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.094 0.906 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.660 -8.740 11.022 14.819 hybrid contribution 0.181 1.727 0.162 1.744 sum -4.479 -7.013 11.184 13.941 Atomic orbital electron populations 1.22794 0.81272 1.02648 1.00029 1.87945 1.19490 1.27709 1.94963 1.22826 0.94509 0.84652 0.95117 0.91167 1.22654 0.97299 1.01474 0.96919 1.22305 0.94985 1.01547 0.96998 1.22615 0.99492 0.99688 0.94218 1.22261 0.94847 1.01048 0.93340 0.88710 1.21289 0.84808 1.01482 0.92331 1.55505 1.14443 1.91081 1.26660 1.01624 0.73072 0.74925 0.71830 1.93536 1.33873 1.87483 1.81490 1.93511 1.61296 1.63515 1.78202 1.29746 1.02417 1.20757 1.19362 1.20085 0.92695 0.96838 1.07507 1.20805 0.98038 0.93405 1.01751 1.21635 0.93468 0.98500 1.00282 1.17684 0.92903 0.91502 0.89096 1.19637 0.96472 0.90121 1.42744 0.89886 1.25931 0.95518 1.00496 0.92316 1.69777 1.20735 1.21761 1.29671 0.86243 0.81145 0.79364 0.79657 1.19149 1.20220 1.18413 1.20780 0.96887 0.93381 1.03393 0.89779 0.94246 0.93741 0.91316 0.90864 0.91467 0.91496 0.90763 0.90362 0.91179 0.90305 0.75331 0.87642 0.88438 0.85773 0.90601 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.35 10.26 -35.23 -0.36 -4.71 16 3 C 0.09 0.91 2.96 -25.61 -0.08 0.84 16 4 H 0.07 0.70 7.50 -51.93 -0.39 0.31 16 5 C -0.15 -1.31 6.62 -25.61 -0.17 -1.48 16 6 C -0.12 -1.06 6.83 -25.00 -0.17 -1.23 16 7 C -0.12 -1.22 5.96 -24.66 -0.15 -1.37 16 8 C -0.10 -1.05 2.70 -88.96 -0.24 -1.29 16 9 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 10 C 0.13 1.68 5.50 -4.04 -0.02 1.66 16 11 N -1.12 -16.16 5.92 -10.61 -0.06 -16.22 16 12 S 2.69 50.40 5.74 -107.50 -0.62 49.78 16 13 O -0.97 -20.45 17.27 -57.17 -0.99 -21.44 16 14 O -0.98 -20.00 16.73 -57.17 -0.96 -20.96 16 15 C -0.63 -13.61 5.94 -39.66 -0.24 -13.85 16 16 C -0.15 -3.21 9.53 -39.28 -0.37 -3.58 16 17 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 18 C -0.12 -2.93 8.70 -38.87 -0.34 -3.26 16 19 C 0.09 2.34 5.57 -106.83 -0.60 1.75 16 20 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 21 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 22 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 23 N -0.79 -19.33 10.95 55.55 0.61 -18.72 16 24 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 27 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 28 C -0.12 -2.93 9.26 -38.88 -0.36 -3.29 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.65 7.96 -51.93 -0.41 0.24 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 37 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 38 H 0.07 0.93 8.06 -51.93 -0.42 0.52 16 39 H 0.08 1.08 7.75 -51.93 -0.40 0.67 16 40 H 0.41 5.02 8.24 -34.48 -0.28 4.74 16 41 H 0.11 2.03 7.59 -52.49 -0.40 1.63 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 43 H 0.12 3.11 6.15 -52.49 -0.32 2.78 16 44 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 45 H 0.11 2.55 7.60 -52.48 -0.40 2.15 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -30.52 380.42 -10.92 -41.44 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.78 Total: 9.40 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: -2.46 Total: -37.16 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.55 Total: -34.95 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -2.31 Total: -47.11 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 50.40 SS G_CDS: -0.62 Total: 49.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.52 -10.92 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.187 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds