Wall clock time and date at job start Sat Apr 11 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99904 * 2 1 4 4 H 1.08998 * 110.02056 * 331.38369 * 3 2 1 5 5 C 1.53879 * 110.07943 * 92.80396 * 3 2 1 6 6 C 1.54266 * 106.59902 * 119.30412 * 5 3 2 7 7 C 1.55029 * 104.28200 * 23.51974 * 6 5 3 8 8 C 1.54273 * 110.02950 * 209.99590 * 3 2 1 9 9 H 1.09001 * 110.48406 * 335.86339 * 8 3 2 10 10 C 1.52994 * 110.48763 * 98.37474 * 8 3 2 11 11 N 1.46505 * 109.47260 * 183.16031 * 10 8 3 12 12 S 1.65600 * 120.00067 * 165.00253 * 11 10 8 13 13 O 1.42101 * 106.40001 * 178.54225 * 12 11 10 14 14 O 1.42104 * 106.39751 * 311.45665 * 12 11 10 15 15 C 1.76201 * 107.21903 * 64.99992 * 12 11 10 16 16 C 1.38659 * 119.87161 * 269.72509 * 15 12 11 17 17 C 1.38622 * 120.49684 * 179.72168 * 16 15 12 18 18 C 1.37635 * 120.24519 * 0.55395 * 17 16 15 19 19 C 1.40699 * 119.74786 * 359.72713 * 18 17 16 20 20 C 1.41392 * 120.24509 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00475 * 204.41291 * 20 19 18 22 22 C 1.39949 * 119.99881 * 24.41193 * 20 19 18 23 23 N 1.30824 * 120.00280 * 17.85205 * 22 20 19 24 24 Si 1.86801 * 119.99941 * 197.85178 * 22 20 19 25 25 H 1.48501 * 109.47463 * 89.99864 * 24 22 20 26 26 H 1.48503 * 109.47125 * 209.99859 * 24 22 20 27 27 H 1.48498 * 109.47176 * 330.00098 * 24 22 20 28 28 C 1.37588 * 119.87659 * 90.00000 * 15 12 11 29 29 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47335 * 300.01076 * 1 2 3 31 31 H 1.09006 * 109.46448 * 60.00345 * 1 2 3 32 32 H 1.09000 * 110.02954 * 238.59246 * 5 3 2 33 33 H 1.09007 * 110.02607 * 359.97165 * 5 3 2 34 34 H 1.09003 * 110.48348 * 142.29118 * 6 5 3 35 35 H 1.09003 * 110.48761 * 264.79908 * 6 5 3 36 36 H 1.08997 * 110.87733 * 203.90169 * 7 6 5 37 37 H 1.09002 * 110.69786 * 80.48040 * 7 6 5 38 38 H 1.09004 * 109.47309 * 63.15908 * 10 8 3 39 39 H 1.08998 * 109.47564 * 303.16199 * 10 8 3 40 40 H 0.97004 * 119.99378 * 344.99618 * 11 10 8 41 41 H 1.07996 * 119.75274 * 359.97438 * 16 15 12 42 42 H 1.08000 * 119.87195 * 180.27803 * 17 16 15 43 43 H 1.07998 * 120.12455 * 179.74193 * 18 17 16 44 44 H 0.96993 * 120.00071 * 180.02562 * 23 22 20 45 45 H 1.08005 * 120.12646 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3407 2.0120 -0.4905 5 6 2.2897 1.7593 1.4435 6 6 3.8114 1.9914 1.5457 7 6 4.2566 2.2581 0.0849 8 6 3.3719 1.2776 -0.7246 9 1 3.7957 0.2736 -0.7017 10 6 3.2202 1.7606 -2.1684 11 7 4.5089 1.6540 -2.8570 12 16 4.5753 1.7482 -4.5090 13 8 5.9480 1.6462 -4.8619 14 8 3.5783 0.8634 -5.0016 15 6 4.0650 3.3733 -4.9597 16 6 2.7259 3.6324 -5.2092 17 6 2.3093 4.9075 -5.5591 18 6 3.2248 5.9288 -5.6737 19 6 4.5870 5.6761 -5.4286 20 6 5.5365 6.7174 -5.5438 21 1 6.5711 6.4848 -5.7486 22 6 5.1357 8.0497 -5.3924 23 7 3.9969 8.3283 -4.8119 24 14 6.2268 9.4303 -6.0193 25 1 5.8703 9.7429 -7.4265 26 1 6.0289 10.6383 -5.1784 27 1 7.6487 9.0073 -5.9512 28 6 4.9976 4.3791 -5.0683 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.7557 2.6860 1.6535 33 1 1.9815 0.9839 2.1449 34 1 4.0239 2.8564 2.1740 35 1 4.3070 1.1040 1.9395 36 1 5.3129 2.0248 -0.0480 37 1 4.0489 3.2898 -0.1989 38 1 2.8915 2.7999 -2.1712 39 1 2.4819 1.1448 -2.6819 40 1 5.3233 1.5284 -2.3452 41 1 2.0014 2.8359 -5.1263 42 1 1.2632 5.0990 -5.7468 43 1 2.8987 6.9205 -5.9505 44 1 3.7190 9.2517 -4.7073 45 1 6.0407 4.1741 -4.8775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:22 Heat of formation + Delta-G solvation = -141.127440 kcal Electronic energy + Delta-G solvation = -27589.895640 eV Core-core repulsion = 23697.326229 eV Total energy + Delta-G solvation = -3892.569411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28541 -39.44326 -38.27235 -37.40582 -36.90945 -35.67699 -35.49652 -31.91079 -31.58338 -30.45989 -29.10945 -27.35047 -27.17741 -25.00992 -23.66601 -22.79543 -21.52107 -21.22141 -20.49521 -19.60094 -18.48744 -18.07826 -17.72879 -17.14481 -16.79333 -16.60696 -16.39182 -16.10228 -15.79043 -15.28175 -15.16893 -15.08798 -15.02051 -14.37202 -14.29510 -13.78533 -13.64851 -13.53408 -13.31624 -13.18837 -13.08237 -13.04352 -12.89171 -12.79734 -12.59691 -12.46035 -12.21593 -12.21429 -11.99242 -11.73360 -11.56857 -11.53893 -11.34762 -11.31804 -11.14643 -10.52590 -10.39347 -9.84842 -9.55979 -8.73335 -6.45001 -0.48825 0.40818 0.84518 1.37721 1.46498 1.50299 2.12762 2.17699 2.55539 2.78583 2.87730 3.43370 3.51593 3.58824 3.60306 3.91935 4.21672 4.26324 4.32135 4.39420 4.44499 4.46746 4.49111 4.58000 4.61377 4.73039 4.75419 4.84854 4.87917 4.90688 4.93592 4.98623 5.05607 5.07541 5.18499 5.20527 5.24069 5.28649 5.41280 5.48778 5.56978 5.89058 5.94287 6.09529 6.12283 6.34364 6.52909 6.79901 6.84939 8.24469 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.003260 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.043230 B = 8585.891061 C = 9351.181096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.084 3.916 4 H 0.072 0.928 5 C -0.142 4.142 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.091 4.091 9 H 0.094 0.906 10 C 0.122 3.878 11 N -1.103 6.103 12 S 2.720 3.280 13 O -0.995 6.995 14 O -0.987 6.987 15 C -0.636 4.636 16 C -0.149 4.149 17 C -0.121 4.121 18 C -0.141 4.141 19 C 0.064 3.936 20 C -0.498 4.498 21 H 0.078 0.922 22 C 0.040 3.960 23 N -0.820 5.820 24 Si 0.982 3.018 25 H -0.263 1.263 26 H -0.265 1.265 27 H -0.260 1.260 28 C -0.144 4.144 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.426 0.574 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.113 0.887 44 H 0.292 0.708 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 -8.365 12.711 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.026 3.974 4 H 0.090 0.910 5 C -0.180 4.180 6 C -0.155 4.155 7 C -0.162 4.162 8 C -0.111 4.111 9 H 0.112 0.888 10 C -0.004 4.004 11 N -0.865 5.865 12 S 2.812 3.188 13 O -0.986 6.986 14 O -0.977 6.977 15 C -0.725 4.725 16 C -0.169 4.169 17 C -0.140 4.140 18 C -0.161 4.161 19 C 0.060 3.940 20 C -0.527 4.527 21 H 0.096 0.904 22 C -0.176 4.176 23 N -0.445 5.445 24 Si 0.802 3.198 25 H -0.187 1.187 26 H -0.189 1.189 27 H -0.184 1.184 28 C -0.165 4.165 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.263 0.737 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.178 -9.000 12.136 15.971 hybrid contribution 0.242 1.682 -0.125 1.704 sum -4.937 -7.317 12.011 14.905 Atomic orbital electron populations 1.22959 0.80013 1.03668 1.00682 1.87910 1.20967 1.28159 1.95126 1.22883 0.94047 0.84577 0.95940 0.91012 1.22630 0.97532 1.01881 0.95928 1.22299 0.94811 1.02185 0.96180 1.22635 0.99765 0.98834 0.94967 1.22222 0.95799 1.01117 0.91949 0.88766 1.21468 0.83778 1.01554 0.93606 1.55138 1.15864 1.90388 1.25134 1.00744 0.71991 0.73423 0.72602 1.93501 1.35066 1.87349 1.82659 1.93493 1.61727 1.63179 1.79340 1.30206 1.02291 1.21872 1.18136 1.20459 0.93152 0.97244 1.06090 1.21135 0.99167 0.93118 1.00616 1.21642 0.93752 0.98818 1.01882 1.18028 0.93668 0.92461 0.89806 1.19860 0.96460 0.91505 1.44916 0.90431 1.26702 0.96902 1.02198 0.91819 1.69804 1.21974 1.22839 1.29884 0.85200 0.79044 0.76388 0.79132 1.18730 1.18931 1.18393 1.20851 0.97402 0.93655 1.04598 0.88676 0.92986 0.93694 0.90510 0.90583 0.90591 0.90969 0.90053 0.91248 0.91309 0.90528 0.73741 0.85131 0.85539 0.86901 0.89727 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.85 113.37 1.23 1.58 16 2 O -0.40 -8.51 10.26 -148.98 -1.53 -10.04 16 3 C 0.08 1.62 2.96 31.32 0.09 1.71 16 4 H 0.07 1.33 7.50 -2.39 -0.02 1.31 16 5 C -0.14 -2.27 6.62 31.32 0.21 -2.06 16 6 C -0.12 -1.82 6.83 31.72 0.22 -1.60 16 7 C -0.12 -2.29 5.96 31.94 0.19 -2.10 16 8 C -0.09 -1.86 2.70 -9.72 -0.03 -1.89 16 9 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 10 C 0.12 3.05 5.50 86.38 0.48 3.52 16 11 N -1.10 -30.50 5.92 -187.49 -1.11 -31.61 16 12 S 2.72 99.58 5.74 -56.49 -0.32 99.26 16 13 O -1.00 -41.41 17.27 -128.00 -2.21 -43.62 16 14 O -0.99 -39.05 16.73 -128.00 -2.14 -41.19 16 15 C -0.64 -27.30 5.94 22.22 0.13 -27.17 16 16 C -0.15 -6.20 9.53 22.46 0.21 -5.98 16 17 C -0.12 -5.29 10.02 22.22 0.22 -5.07 16 18 C -0.14 -7.07 8.70 22.73 0.20 -6.87 16 19 C 0.06 3.35 5.57 -21.29 -0.12 3.23 16 20 C -0.50 -26.18 9.05 23.46 0.21 -25.97 16 21 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 22 C 0.04 1.91 5.14 85.26 0.44 2.35 16 23 N -0.82 -40.41 10.95 21.83 0.24 -40.17 16 24 Si 0.98 36.78 29.59 68.60 2.03 38.81 16 25 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 27 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 28 C -0.14 -7.01 9.26 22.73 0.21 -6.79 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.68 8.10 -2.38 -0.02 0.66 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.19 7.96 -2.38 -0.02 1.17 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.36 8.01 -2.39 -0.02 1.34 16 37 H 0.07 1.41 8.00 -2.39 -0.02 1.39 16 38 H 0.07 1.76 8.06 -2.38 -0.02 1.74 16 39 H 0.08 1.97 7.75 -2.39 -0.02 1.95 16 40 H 0.43 9.75 8.24 -96.74 -0.80 8.95 16 41 H 0.13 4.74 7.59 -2.91 -0.02 4.72 16 42 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.11 5.81 6.15 -2.91 -0.02 5.79 16 44 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 45 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 Total: -1.00 -65.27 380.42 -0.95 -66.22 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.20 Total: 35.45 kcal Atomic # 6 Polarization: -77.00 SS G_CDS: 3.89 Total: -73.11 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.87 Total: -71.78 kcal Atomic # 8 Polarization: -88.97 SS G_CDS: -5.88 Total: -94.85 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: 99.58 SS G_CDS: -0.32 Total: 99.26 kcal Total: -65.27 -0.95 -66.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.906 kcal (2) G-P(sol) polarization free energy of solvation -65.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds