Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 110.54257 * 2 1 4 4 O 1.42096 * 110.53838 * 136.74494 * 2 1 3 5 5 C 1.76195 * 104.45134 * 248.37018 * 2 1 3 6 6 C 1.38230 * 119.99939 * 269.72798 * 5 2 1 7 7 C 1.38243 * 119.99747 * 179.74053 * 6 5 2 8 8 C 1.38234 * 119.99845 * 0.55629 * 7 6 5 9 9 C 1.50700 * 119.99991 * 179.71943 * 8 7 6 10 10 H 1.08993 * 109.47462 * 204.97742 * 9 8 7 11 11 O 1.42902 * 109.47235 * 324.97958 * 9 8 7 12 12 C 1.53002 * 109.46951 * 84.97399 * 9 8 7 13 13 N 1.46895 * 109.47123 * 179.97438 * 12 9 8 14 14 C 1.46904 * 111.00174 * 180.02562 * 13 12 9 15 15 C 1.52999 * 109.47203 * 185.34988 * 14 13 12 16 16 C 1.50699 * 115.54908 * 65.04941 * 15 14 13 17 17 H 1.07999 * 120.00358 * 265.44367 * 16 15 14 18 18 C 1.37881 * 119.99543 * 85.44431 * 16 15 14 19 19 N 1.31507 * 120.00233 * 353.59560 * 18 16 15 20 20 Si 1.86810 * 119.99759 * 173.59567 * 18 16 15 21 21 H 1.48503 * 109.47135 * 89.99829 * 20 18 16 22 22 H 1.48494 * 109.46986 * 209.99800 * 20 18 16 23 23 H 1.48498 * 109.46928 * 330.00320 * 20 18 16 24 24 C 1.53004 * 117.50270 * 279.37975 * 15 14 13 25 25 C 1.52999 * 117.49880 * 210.72209 * 15 14 13 26 26 C 1.38237 * 119.99916 * 359.70023 * 8 7 6 27 27 C 1.38232 * 120.00259 * 0.02562 * 26 8 7 28 28 H 1.08998 * 109.46799 * 51.62862 * 1 2 3 29 29 H 1.09001 * 109.47068 * 291.62854 * 1 2 3 30 30 H 1.08999 * 109.47240 * 171.62924 * 1 2 3 31 31 H 1.07998 * 120.00319 * 0.02562 * 6 5 2 32 32 H 1.07998 * 119.99590 * 180.27049 * 7 6 5 33 33 H 0.96702 * 113.99993 * 59.99871 * 11 9 8 34 34 H 1.08993 * 109.47318 * 300.00432 * 12 9 8 35 35 H 1.09001 * 109.46813 * 60.00617 * 12 9 8 36 36 H 1.00903 * 111.00528 * 303.95661 * 13 12 9 37 37 H 1.09000 * 109.47020 * 305.35286 * 14 13 12 38 38 H 1.09002 * 109.47091 * 65.35435 * 14 13 12 39 39 H 0.97004 * 120.00300 * 179.97438 * 19 18 16 40 40 H 1.09004 * 117.49366 * 0.02562 * 24 15 14 41 41 H 1.08996 * 117.49757 * 145.01453 * 24 15 14 42 42 H 1.09004 * 117.49545 * 214.98391 * 25 15 14 43 43 H 1.08994 * 117.49884 * 359.97336 * 25 15 14 44 44 H 1.08006 * 119.99591 * 180.02562 * 26 8 7 45 45 H 1.07994 * 120.00074 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9691 0.9118 5 6 2.2538 -0.6289 -1.5861 6 6 2.4317 -1.9879 -1.7656 7 6 2.7715 -2.4818 -3.0113 8 6 2.9445 -1.6156 -4.0746 9 6 3.3210 -2.1535 -5.4311 10 1 3.8322 -1.3774 -6.0006 11 8 4.1884 -3.2781 -5.2736 12 6 2.0570 -2.5850 -6.1774 13 7 2.4239 -3.1086 -7.4999 14 6 1.2326 -3.5332 -8.2472 15 6 1.6617 -4.1932 -9.5591 16 6 2.4313 -5.4810 -9.4174 17 1 3.5113 -5.4680 -9.4205 18 6 1.7567 -6.6761 -9.2838 19 7 0.4481 -6.6815 -9.1534 20 14 2.7016 -8.2876 -9.2880 21 1 3.0903 -8.6371 -7.8981 22 1 1.8438 -9.3629 -9.8474 23 1 3.9219 -8.1436 -10.1219 24 6 2.0319 -3.2736 -10.7246 25 6 0.7198 -4.0612 -10.7575 26 6 2.7716 -0.2561 -3.8937 27 6 2.4264 0.2373 -2.6495 28 1 -0.3633 0.6379 -0.8057 29 1 -0.3633 0.3788 0.9553 30 1 -0.3634 -1.0167 -0.1496 31 1 2.3009 -2.6642 -0.9339 32 1 2.9062 -3.5440 -3.1526 33 1 3.7981 -4.0091 -4.7751 34 1 1.5458 -3.3610 -5.6079 35 1 1.3954 -1.7271 -6.2976 36 1 2.9555 -2.4292 -8.0232 37 1 0.6644 -4.2466 -7.6503 38 1 0.6109 -2.6644 -8.4639 39 1 -0.0265 -7.5222 -9.0598 40 1 1.9700 -2.1984 -10.5566 41 1 2.8318 -3.6003 -11.3890 42 1 0.6570 -4.9059 -11.4436 43 1 -0.2059 -3.5046 -10.6112 44 1 2.9064 0.4206 -4.7246 45 1 2.2918 1.2995 -2.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819281663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -88.661957 kcal Electronic energy + Delta-G solvation = -26623.487921 eV Core-core repulsion = 22733.193584 eV Total energy + Delta-G solvation = -3890.294337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81138 -38.92080 -38.14302 -37.98988 -36.97550 -35.36868 -33.87795 -32.93597 -32.02837 -30.30358 -29.39621 -27.54591 -25.95502 -24.03152 -23.80904 -22.82812 -22.30868 -20.85993 -20.03700 -19.01055 -18.20856 -17.85566 -17.32738 -17.12355 -16.80054 -16.47730 -16.30473 -15.96945 -15.60608 -15.37270 -15.27914 -14.80040 -14.58196 -14.49673 -14.22289 -14.08290 -13.93677 -13.69870 -13.47673 -13.18985 -13.14489 -13.04488 -12.89919 -12.84947 -12.59449 -12.40121 -12.33470 -12.18843 -12.01000 -11.99205 -11.71292 -11.43340 -11.00378 -10.72275 -10.37293 -10.16726 -10.05670 -9.89690 -9.03288 -8.02878 -6.08167 -0.86007 -0.24833 0.28458 1.43008 1.44961 1.53895 1.92004 2.35664 2.48810 3.02301 3.12004 3.18935 3.27377 3.51376 3.57969 3.72775 3.90922 3.91621 4.02121 4.11622 4.13715 4.21310 4.32555 4.39255 4.48090 4.54976 4.66775 4.68237 4.74402 4.75882 4.87853 4.97516 4.99146 5.00087 5.04454 5.05824 5.11737 5.29274 5.43960 5.65173 5.75879 5.80216 5.89318 6.32563 6.51318 6.68789 6.81483 6.94904 7.56878 9.05989 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002236 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.970127 B =12517.804581 C =13031.823076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.511 3.489 3 O -0.975 6.975 4 O -0.978 6.978 5 C -0.667 4.667 6 C -0.032 4.032 7 C -0.143 4.143 8 C -0.066 4.066 9 C 0.153 3.847 10 H 0.115 0.885 11 O -0.556 6.556 12 C 0.041 3.959 13 N -0.672 5.672 14 C 0.125 3.875 15 C 0.026 3.974 16 C -0.478 4.478 17 H 0.045 0.955 18 C 0.023 3.977 19 N -0.912 5.912 20 Si 0.942 3.058 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.189 4.189 25 C -0.167 4.167 26 C -0.137 4.137 27 C -0.031 4.031 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.141 0.859 33 H 0.382 0.618 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.338 0.662 37 H 0.042 0.958 38 H 0.008 0.992 39 H 0.256 0.744 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.152 0.848 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 15.891 17.368 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.694 3.306 3 O -0.973 6.973 4 O -0.976 6.976 5 C -0.753 4.753 6 C -0.050 4.050 7 C -0.161 4.161 8 C -0.067 4.067 9 C 0.093 3.907 10 H 0.132 0.868 11 O -0.363 6.363 12 C -0.089 4.089 13 N -0.302 5.302 14 C -0.004 4.004 15 C 0.025 3.975 16 C -0.516 4.516 17 H 0.063 0.937 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.769 3.231 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.226 4.226 25 C -0.205 4.205 26 C -0.156 4.156 27 C -0.049 4.049 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.156 0.844 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.169 0.831 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.511 15.747 17.915 23.899 hybrid contribution -0.853 -1.069 -0.902 1.639 sum -2.364 14.677 17.013 22.593 Atomic orbital electron populations 1.30047 1.19715 1.14189 1.14056 1.04714 0.79813 0.72993 0.73057 1.93534 1.79639 1.37825 1.86279 1.93537 1.79683 1.62382 1.61952 1.30697 1.19116 1.02921 1.22516 1.21132 0.92324 0.93817 0.97742 1.21292 1.00993 1.00960 0.92885 1.20994 0.94610 0.94958 0.96173 1.20864 0.90390 0.88808 0.90596 0.86758 1.86624 1.42921 1.27959 1.78768 1.22566 0.96255 0.98519 0.91559 1.60030 1.22448 1.44451 1.03308 1.21176 0.89800 0.94944 0.94509 1.18926 0.98018 0.94218 0.86301 1.20525 0.91892 0.90616 1.48578 0.93680 1.25533 0.95534 1.01371 0.95132 1.70098 1.07688 1.26458 1.50851 0.85814 0.78723 0.80460 0.78105 1.20481 1.21295 1.19907 1.22977 0.98118 0.96562 1.04919 1.22441 0.92635 1.00793 1.04628 1.21404 1.00822 0.94674 0.98681 1.21203 0.92167 1.00376 0.91191 0.82851 0.82817 0.83116 0.82764 0.84125 0.76911 0.91804 0.93900 0.84379 0.93990 0.97421 0.93556 0.89123 0.90831 0.92573 0.90962 0.83054 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.08 10.80 113.37 1.22 -0.86 16 2 S 2.51 33.69 5.80 -56.49 -0.33 33.37 16 3 O -0.98 -19.49 17.13 -127.65 -2.19 -21.67 16 4 O -0.98 -20.37 17.12 -127.65 -2.19 -22.55 16 5 C -0.67 -10.88 5.66 22.27 0.13 -10.76 16 6 C -0.03 -0.56 9.47 22.27 0.21 -0.35 16 7 C -0.14 -2.80 9.33 22.27 0.21 -2.59 16 8 C -0.07 -1.36 5.00 -19.87 -0.10 -1.46 16 9 C 0.15 3.63 3.42 29.85 0.10 3.73 16 10 H 0.11 2.52 8.05 -2.39 -0.02 2.50 16 11 O -0.56 -15.74 13.00 -148.98 -1.94 -17.68 16 12 C 0.04 1.12 5.32 86.30 0.46 1.58 16 13 N -0.67 -24.01 6.24 -513.89 -3.21 -27.22 16 14 C 0.12 5.26 5.51 86.30 0.48 5.73 16 15 C 0.03 1.23 1.55 -52.93 -0.08 1.15 16 16 C -0.48 -25.92 8.74 25.60 0.22 -25.69 16 17 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 18 C 0.02 1.27 5.39 84.66 0.46 1.72 16 19 N -0.91 -51.66 12.92 21.45 0.28 -51.38 16 20 Si 0.94 44.03 29.54 68.60 2.03 46.06 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 24 C -0.19 -7.72 9.96 30.62 0.30 -7.42 16 25 C -0.17 -7.65 9.41 30.62 0.29 -7.36 16 26 C -0.14 -2.40 9.68 22.27 0.22 -2.18 16 27 C -0.03 -0.50 9.47 22.27 0.21 -0.29 16 28 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.15 2.22 7.57 -2.91 -0.02 2.20 16 32 H 0.14 2.42 6.61 -2.91 -0.02 2.40 16 33 H 0.38 9.09 7.39 -74.06 -0.55 8.55 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.34 11.21 8.79 -89.69 -0.79 10.42 16 37 H 0.04 2.03 8.13 -2.39 -0.02 2.01 16 38 H 0.01 0.30 8.09 -2.39 -0.02 0.28 16 39 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 41 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 43 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.16 1.88 7.57 -2.91 -0.02 1.86 16 Total: -1.00 -76.29 391.44 -3.55 -79.84 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.33 Total: 26.28 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 4.32 Total: -45.04 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.93 Total: -78.60 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -6.31 Total: -61.90 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 33.69 SS G_CDS: -0.33 Total: 33.37 kcal Total: -76.29 -3.55 -79.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819281663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.826 kcal (2) G-P(sol) polarization free energy of solvation -76.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds