Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00239 * 2 1 4 4 O 1.20826 * 119.99809 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00215 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46968 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.46549 * 179.97438 * 6 5 3 8 8 C 1.37098 * 120.00016 * 264.25704 * 7 6 5 9 9 H 1.07998 * 120.00024 * 146.20626 * 8 7 6 10 10 C 1.38951 * 119.99783 * 326.20196 * 8 7 6 11 11 N 1.31410 * 120.00150 * 337.64887 * 10 8 7 12 12 Si 1.86802 * 119.99729 * 157.65317 * 10 8 7 13 13 H 1.48498 * 109.47296 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47417 * 119.99934 * 12 10 8 15 15 H 1.48500 * 109.47020 * 239.99856 * 12 10 8 16 16 C 1.34775 * 119.99950 * 84.53724 * 7 6 5 17 17 O 1.21293 * 119.99963 * 359.72039 * 16 7 6 18 18 C 1.50698 * 120.00389 * 179.71738 * 16 7 6 19 19 C 1.53001 * 109.47452 * 179.97438 * 18 16 7 20 20 H 1.08999 * 109.46851 * 305.00202 * 19 18 16 21 21 O 1.42897 * 109.46750 * 65.00615 * 19 18 16 22 22 C 1.50695 * 109.46955 * 185.00144 * 19 18 16 23 23 C 1.38267 * 119.99069 * 279.73072 * 22 19 18 24 24 C 1.38224 * 120.05081 * 179.73316 * 23 22 19 25 25 C 1.38213 * 120.02513 * 0.53772 * 24 23 22 26 26 C 1.38437 * 119.97807 * 359.73651 * 25 24 23 27 27 F 1.35099 * 120.02749 * 180.02562 * 26 25 24 28 28 C 1.38186 * 119.98641 * 100.00275 * 22 19 18 29 29 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09012 * 109.47081 * 299.99950 * 1 2 3 31 31 H 1.08996 * 109.47393 * 59.99898 * 1 2 3 32 32 H 1.08994 * 109.47133 * 59.99740 * 5 3 2 33 33 H 1.08997 * 109.46664 * 300.00003 * 5 3 2 34 34 H 1.09002 * 109.46738 * 60.00460 * 6 5 3 35 35 H 1.08993 * 109.47348 * 300.00066 * 6 5 3 36 36 H 0.97003 * 119.99709 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.47439 * 300.00585 * 18 16 7 38 38 H 1.09005 * 109.46643 * 60.00019 * 18 16 7 39 39 H 0.96699 * 114.00617 * 59.99465 * 21 19 18 40 40 H 1.08000 * 119.96951 * 359.97320 * 23 22 19 41 41 H 1.08000 * 119.98259 * 180.27191 * 24 23 22 42 42 H 1.08002 * 120.01008 * 179.70733 * 25 24 23 43 43 H 1.07997 * 120.00818 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8186 -0.0011 8 6 6.1414 2.9735 1.1803 9 1 7.1099 2.5139 1.3112 10 6 5.5828 3.7220 2.2091 11 7 4.6633 4.6221 1.9424 12 14 6.1392 3.4488 3.9713 13 1 7.1768 2.3869 4.0038 14 1 6.7044 4.7106 4.5133 15 1 4.9782 3.0313 4.7978 16 6 6.1420 2.7424 -1.1629 17 8 5.5419 2.6054 -2.2080 18 6 7.6465 2.8276 -1.1636 19 6 8.1632 2.7145 -2.5993 20 1 7.7794 1.8006 -3.0526 21 8 7.7204 3.8436 -3.3550 22 6 9.6696 2.6762 -2.5894 23 6 10.3901 3.8497 -2.4647 24 6 11.7718 3.8154 -2.4500 25 6 12.4350 2.6088 -2.5711 26 6 11.7148 1.4337 -2.7018 27 9 12.3620 0.2537 -2.8198 28 6 10.3305 1.4687 -2.7107 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.9557 0.7809 -0.8907 33 1 3.9563 0.7805 0.8891 34 1 3.6108 3.2363 0.8890 35 1 3.6101 3.2359 -0.8910 36 1 4.2736 5.1449 2.6607 37 1 7.9567 3.7826 -0.7395 38 1 8.0567 2.0141 -0.5651 39 1 8.0252 4.6932 -3.0081 40 1 9.8727 4.7934 -2.3748 41 1 12.3334 4.7322 -2.3480 42 1 13.5147 2.5828 -2.5643 43 1 9.7676 0.5527 -2.8130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = -189.070471 kcal Electronic energy + Delta-G solvation = -29241.133758 eV Core-core repulsion = 24780.272205 eV Total energy + Delta-G solvation = -4460.861553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.95130 -40.06328 -39.69390 -38.51518 -36.53757 -36.09085 -34.84589 -32.12728 -31.94863 -30.96116 -30.46262 -29.18124 -27.46790 -25.08583 -24.76342 -22.92803 -22.84712 -21.08700 -20.22005 -19.15923 -17.98859 -17.42943 -16.78737 -16.45237 -16.29367 -16.23343 -16.13525 -15.77681 -15.64951 -15.60191 -14.93844 -14.57973 -14.22967 -14.01741 -13.71312 -13.54489 -13.34913 -13.13407 -12.90369 -12.67301 -12.32565 -12.18475 -12.04840 -11.89349 -11.72122 -11.56496 -11.34429 -11.22117 -10.90744 -10.84754 -10.61688 -10.54162 -10.43103 -10.11846 -10.01167 -9.81762 -9.22561 -9.02823 -8.76409 -8.44930 -7.66381 -6.46556 -4.15312 1.06912 1.12281 2.67002 3.03002 3.06226 3.16987 3.19213 3.48418 3.82634 4.03382 4.11706 4.46870 4.67575 4.76756 4.81869 4.89833 5.00606 5.11551 5.23920 5.27270 5.30753 5.33243 5.46644 5.58259 5.63620 5.73145 5.82051 5.90937 5.96359 6.00520 6.11975 6.23099 6.26986 6.28754 6.37579 6.60279 6.73223 6.80163 6.88717 7.27364 7.41401 7.79695 7.96599 8.17845 8.26963 8.98669 9.41672 9.85173 10.54514 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.003119 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.232324 B = 8975.126787 C =10243.836908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.128 3.872 7 N -0.441 5.441 8 C -0.348 4.348 9 H 0.093 0.907 10 C 0.044 3.956 11 N -0.850 5.850 12 Si 0.909 3.091 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.472 3.528 17 O -0.588 6.588 18 C -0.146 4.146 19 C 0.163 3.837 20 H 0.111 0.889 21 O -0.536 6.536 22 C -0.077 4.077 23 C -0.121 4.121 24 C -0.088 4.088 25 C -0.161 4.161 26 C 0.097 3.903 27 F -0.142 7.142 28 C -0.144 4.144 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.365 0.635 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 -4.761 -3.335 9.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.004 3.996 7 N -0.159 5.159 8 C -0.475 4.475 9 H 0.110 0.890 10 C -0.163 4.163 11 N -0.485 5.485 12 Si 0.735 3.265 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.204 1.204 16 C 0.261 3.739 17 O -0.472 6.472 18 C -0.187 4.187 19 C 0.103 3.897 20 H 0.129 0.871 21 O -0.340 6.340 22 C -0.077 4.077 23 C -0.139 4.139 24 C -0.106 4.106 25 C -0.180 4.180 26 C 0.078 3.922 27 F -0.121 7.121 28 C -0.163 4.163 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.212 0.788 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.702 -4.887 -4.096 9.251 hybrid contribution 0.499 0.123 1.538 1.622 sum 7.201 -4.764 -2.558 9.006 Atomic orbital electron populations 1.23166 0.77388 1.03013 1.02335 1.86538 1.22737 1.34449 1.84675 1.24084 0.92407 0.80883 0.71737 1.90652 1.67265 1.36220 1.45022 1.21911 0.85846 1.03504 1.05121 1.21170 0.82218 0.90767 1.05448 1.43433 1.04428 1.62787 1.05283 1.19451 1.05164 1.32246 0.90674 0.88985 1.25354 0.96898 0.93562 1.00454 1.69949 1.27201 1.18046 1.33317 0.86163 0.78927 0.78588 0.82784 1.19073 1.20642 1.20432 1.20211 0.89054 0.80991 0.83659 1.90591 1.70361 1.54822 1.31472 1.22101 0.95674 1.04713 0.96165 1.20625 0.85636 0.91493 0.91925 0.87092 1.86746 1.76812 1.15659 1.54749 1.20688 0.97741 0.92693 0.96595 1.21025 0.94063 0.98305 1.00555 1.20966 0.94251 0.97299 0.98080 1.21110 1.00599 0.91661 1.04593 1.17679 0.90488 0.81127 1.02888 1.91490 1.81702 1.45395 1.93511 1.21011 0.92370 0.99386 1.03565 0.88633 0.92186 0.92164 0.88351 0.87928 0.86530 0.91837 0.91832 0.88932 0.89300 0.78797 0.85228 0.84978 0.84995 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.02 10.56 -39.25 -0.41 -6.44 16 3 C 0.47 9.00 7.96 36.01 0.29 9.29 16 4 O -0.50 -11.07 15.73 -18.75 -0.29 -11.36 16 5 C -0.12 -2.47 6.10 -27.88 -0.17 -2.64 16 6 C 0.13 3.02 4.18 -4.04 -0.02 3.01 16 7 N -0.44 -10.37 2.56 -114.81 -0.29 -10.67 16 8 C -0.35 -8.16 8.70 -14.93 -0.13 -8.29 16 9 H 0.09 2.03 6.98 -52.49 -0.37 1.67 16 10 C 0.04 1.06 4.92 -17.47 -0.09 0.98 16 11 N -0.85 -21.80 11.34 55.50 0.63 -21.17 16 12 Si 0.91 18.48 29.61 -169.99 -5.03 13.45 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 16 C 0.47 10.60 7.48 -10.99 -0.08 10.52 16 17 O -0.59 -14.66 15.09 -8.88 -0.13 -14.79 16 18 C -0.15 -2.59 4.02 -27.88 -0.11 -2.70 16 19 C 0.16 2.57 2.75 -27.88 -0.08 2.50 16 20 H 0.11 1.87 7.82 -51.93 -0.41 1.46 16 21 O -0.54 -9.08 12.42 -49.66 -0.62 -9.69 16 22 C -0.08 -1.01 4.97 -104.63 -0.52 -1.53 16 23 C -0.12 -1.38 9.32 -39.58 -0.37 -1.75 16 24 C -0.09 -0.88 10.04 -39.60 -0.40 -1.28 16 25 C -0.16 -1.70 10.03 -39.52 -0.40 -2.10 16 26 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 27 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 28 C -0.14 -1.84 9.65 -39.51 -0.38 -2.23 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 33 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 34 H 0.12 3.00 5.31 -51.93 -0.28 2.72 16 35 H 0.06 1.63 7.55 -51.93 -0.39 1.23 16 36 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 37 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 38 H 0.09 1.47 7.65 -51.93 -0.40 1.07 16 39 H 0.37 4.85 7.49 45.56 0.34 5.20 16 40 H 0.13 1.26 6.77 -52.49 -0.36 0.90 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.14 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -31.07 374.69 -6.93 -38.00 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.79 Total: 12.61 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.67 Total: 6.20 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.34 Total: -31.84 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.46 Total: -42.29 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.07 -6.93 -38.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.066 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds