Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00239 * 2 1 4 4 O 1.20826 * 119.99809 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00215 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46968 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.46549 * 179.97438 * 6 5 3 8 8 C 1.37098 * 120.00016 * 264.25704 * 7 6 5 9 9 H 1.07998 * 120.00024 * 146.20626 * 8 7 6 10 10 C 1.38951 * 119.99783 * 326.20196 * 8 7 6 11 11 N 1.31410 * 120.00150 * 337.64887 * 10 8 7 12 12 Si 1.86802 * 119.99729 * 157.65317 * 10 8 7 13 13 H 1.48498 * 109.47296 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47417 * 119.99934 * 12 10 8 15 15 H 1.48500 * 109.47020 * 239.99856 * 12 10 8 16 16 C 1.34775 * 119.99950 * 84.53724 * 7 6 5 17 17 O 1.21293 * 119.99963 * 359.72039 * 16 7 6 18 18 C 1.50698 * 120.00389 * 179.71738 * 16 7 6 19 19 C 1.53001 * 109.47452 * 179.97438 * 18 16 7 20 20 H 1.08999 * 109.46851 * 305.00202 * 19 18 16 21 21 O 1.42897 * 109.46750 * 65.00615 * 19 18 16 22 22 C 1.50695 * 109.46955 * 185.00144 * 19 18 16 23 23 C 1.38267 * 119.99069 * 279.73072 * 22 19 18 24 24 C 1.38224 * 120.05081 * 179.73316 * 23 22 19 25 25 C 1.38213 * 120.02513 * 0.53772 * 24 23 22 26 26 C 1.38437 * 119.97807 * 359.73651 * 25 24 23 27 27 F 1.35099 * 120.02749 * 180.02562 * 26 25 24 28 28 C 1.38186 * 119.98641 * 100.00275 * 22 19 18 29 29 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09012 * 109.47081 * 299.99950 * 1 2 3 31 31 H 1.08996 * 109.47393 * 59.99898 * 1 2 3 32 32 H 1.08994 * 109.47133 * 59.99740 * 5 3 2 33 33 H 1.08997 * 109.46664 * 300.00003 * 5 3 2 34 34 H 1.09002 * 109.46738 * 60.00460 * 6 5 3 35 35 H 1.08993 * 109.47348 * 300.00066 * 6 5 3 36 36 H 0.97003 * 119.99709 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.47439 * 300.00585 * 18 16 7 38 38 H 1.09005 * 109.46643 * 60.00019 * 18 16 7 39 39 H 0.96699 * 114.00617 * 59.99465 * 21 19 18 40 40 H 1.08000 * 119.96951 * 359.97320 * 23 22 19 41 41 H 1.08000 * 119.98259 * 180.27191 * 24 23 22 42 42 H 1.08002 * 120.01008 * 179.70733 * 25 24 23 43 43 H 1.07997 * 120.00818 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8186 -0.0011 8 6 6.1414 2.9735 1.1803 9 1 7.1099 2.5139 1.3112 10 6 5.5828 3.7220 2.2091 11 7 4.6633 4.6221 1.9424 12 14 6.1392 3.4488 3.9713 13 1 7.1768 2.3869 4.0038 14 1 6.7044 4.7106 4.5133 15 1 4.9782 3.0313 4.7978 16 6 6.1420 2.7424 -1.1629 17 8 5.5419 2.6054 -2.2080 18 6 7.6465 2.8276 -1.1636 19 6 8.1632 2.7145 -2.5993 20 1 7.7794 1.8006 -3.0526 21 8 7.7204 3.8436 -3.3550 22 6 9.6696 2.6762 -2.5894 23 6 10.3901 3.8497 -2.4647 24 6 11.7718 3.8154 -2.4500 25 6 12.4350 2.6088 -2.5711 26 6 11.7148 1.4337 -2.7018 27 9 12.3620 0.2537 -2.8198 28 6 10.3305 1.4687 -2.7107 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.9557 0.7809 -0.8907 33 1 3.9563 0.7805 0.8891 34 1 3.6108 3.2363 0.8890 35 1 3.6101 3.2359 -0.8910 36 1 4.2736 5.1449 2.6607 37 1 7.9567 3.7826 -0.7395 38 1 8.0567 2.0141 -0.5651 39 1 8.0252 4.6932 -3.0081 40 1 9.8727 4.7934 -2.3748 41 1 12.3334 4.7322 -2.3480 42 1 13.5147 2.5828 -2.5643 43 1 9.7676 0.5527 -2.8130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = -207.212378 kcal Electronic energy + Delta-G solvation = -29241.920450 eV Core-core repulsion = 24780.272205 eV Total energy + Delta-G solvation = -4461.648245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.88778 -41.58564 -40.92642 -39.99207 -37.86463 -37.51839 -36.64247 -33.83337 -33.26754 -32.51318 -31.40775 -30.45875 -28.67907 -26.89477 -26.08798 -24.38642 -23.73357 -22.22467 -21.72287 -20.95181 -19.28742 -18.87422 -18.20080 -17.82738 -17.67294 -17.50808 -17.37243 -17.10971 -16.92989 -16.57867 -16.35702 -16.15514 -15.79952 -15.30090 -15.02359 -14.83459 -14.55520 -14.52813 -14.19911 -14.00484 -13.79309 -13.61243 -13.34553 -13.13745 -12.95719 -12.86978 -12.73125 -12.62475 -12.51318 -12.42527 -12.05957 -11.97444 -11.83926 -11.78671 -11.61783 -11.12270 -10.99067 -10.35217 -9.91711 -9.63615 -9.53613 -8.28906 -6.03176 0.16434 0.24446 1.11509 1.42681 1.51713 1.62781 1.66177 2.07099 2.34864 2.58106 2.94763 3.08376 3.24437 3.64040 3.65489 3.84518 3.84712 4.05015 4.10200 4.13434 4.19966 4.25085 4.29527 4.30450 4.35090 4.45999 4.59621 4.64732 4.68755 4.80364 4.87490 4.97064 5.03389 5.11751 5.16888 5.26035 5.37363 5.40831 5.53853 5.54855 5.93409 5.98192 6.41771 6.68486 6.84609 7.15061 7.60727 8.04510 8.73471 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.003119 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.232324 B = 8975.126787 C =10243.836908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.115 4.115 6 C 0.134 3.866 7 N -0.452 5.452 8 C -0.352 4.352 9 H 0.109 0.891 10 C 0.002 3.998 11 N -0.890 5.890 12 Si 0.976 3.024 13 H -0.250 1.250 14 H -0.282 1.282 15 H -0.284 1.284 16 C 0.461 3.539 17 O -0.619 6.619 18 C -0.134 4.134 19 C 0.173 3.827 20 H 0.093 0.907 21 O -0.558 6.558 22 C -0.089 4.089 23 C -0.124 4.124 24 C -0.082 4.082 25 C -0.154 4.154 26 C 0.081 3.919 27 F -0.148 7.148 28 C -0.155 4.155 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.029 0.971 36 H 0.270 0.730 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.379 0.621 40 H 0.145 0.855 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.700 -5.443 -2.405 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.153 4.153 6 C 0.009 3.991 7 N -0.170 5.170 8 C -0.480 4.480 9 H 0.126 0.874 10 C -0.201 4.201 11 N -0.527 5.527 12 Si 0.800 3.200 13 H -0.174 1.174 14 H -0.208 1.208 15 H -0.210 1.210 16 C 0.252 3.748 17 O -0.506 6.506 18 C -0.174 4.174 19 C 0.114 3.886 20 H 0.111 0.889 21 O -0.364 6.364 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.099 4.099 25 C -0.172 4.172 26 C 0.062 3.938 27 F -0.127 7.127 28 C -0.174 4.174 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.228 0.772 40 H 0.163 0.837 41 H 0.184 0.816 42 H 0.175 0.825 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.791 -5.597 -3.165 10.892 hybrid contribution -0.195 0.334 1.175 1.237 sum 8.596 -5.263 -1.990 10.274 Atomic orbital electron populations 1.23585 0.74785 1.05890 1.02431 1.86506 1.25161 1.32359 1.83858 1.23870 0.92173 0.81278 0.71030 1.90641 1.67860 1.37500 1.46724 1.21682 0.86754 1.00922 1.05988 1.20903 0.82791 0.92804 1.02599 1.43674 1.04348 1.63020 1.05991 1.19834 1.05698 1.31916 0.90507 0.87355 1.26178 0.96861 0.93013 1.04044 1.70075 1.28911 1.19377 1.34356 0.85134 0.78484 0.78624 0.77746 1.17357 1.20753 1.21036 1.21043 0.91087 0.79875 0.82816 1.90563 1.71575 1.55980 1.32453 1.22050 0.91899 1.05417 0.97999 1.20382 0.87541 0.90528 0.90188 0.88889 1.86700 1.77531 1.16783 1.55394 1.20368 0.95868 0.93754 0.98940 1.21299 0.94992 0.98181 0.99748 1.21339 0.93689 0.98408 0.96482 1.21472 1.01935 0.91049 1.02772 1.17857 0.90416 0.81644 1.03909 1.91474 1.81681 1.45876 1.93678 1.21071 0.92972 0.99408 1.03951 0.84343 0.92090 0.92197 0.87981 0.86346 0.88654 0.95224 0.92014 0.88340 0.87919 0.77173 0.83727 0.81608 0.82519 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.54 10.56 -51.39 -0.54 -12.08 16 3 C 0.47 18.46 7.96 71.24 0.57 19.03 16 4 O -0.54 -24.28 15.73 21.97 0.35 -23.94 16 5 C -0.11 -4.62 6.10 29.85 0.18 -4.43 16 6 C 0.13 6.56 4.18 86.38 0.36 6.93 16 7 N -0.45 -21.66 2.56 -635.54 -1.63 -23.29 16 8 C -0.35 -16.39 8.70 84.04 0.73 -15.66 16 9 H 0.11 4.60 6.98 -2.91 -0.02 4.58 16 10 C 0.00 0.11 4.92 84.93 0.42 0.53 16 11 N -0.89 -46.70 11.34 21.66 0.25 -46.46 16 12 Si 0.98 37.31 29.61 68.60 2.03 39.34 16 13 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 14 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 15 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 16 C 0.46 21.11 7.48 87.66 0.66 21.77 16 17 O -0.62 -31.92 15.09 10.72 0.16 -31.76 16 18 C -0.13 -4.68 4.02 29.85 0.12 -4.56 16 19 C 0.17 5.47 2.75 29.85 0.08 5.55 16 20 H 0.09 3.23 7.82 -2.39 -0.02 3.21 16 21 O -0.56 -18.98 12.42 -135.19 -1.68 -20.65 16 22 C -0.09 -2.25 4.97 -19.87 -0.10 -2.34 16 23 C -0.12 -2.54 9.32 22.27 0.21 -2.33 16 24 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 25 C -0.15 -2.78 10.03 22.31 0.22 -2.56 16 26 C 0.08 1.86 7.30 22.37 0.16 2.02 16 27 F -0.15 -3.60 17.27 44.97 0.78 -2.83 16 28 C -0.16 -3.84 9.65 22.31 0.22 -3.62 16 29 H 0.14 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 33 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 34 H 0.10 5.13 5.31 -2.39 -0.01 5.12 16 35 H 0.03 1.61 7.55 -2.39 -0.02 1.59 16 36 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 37 H 0.10 3.32 8.10 -2.39 -0.02 3.30 16 38 H 0.10 3.29 7.65 -2.38 -0.02 3.27 16 39 H 0.38 9.91 7.49 -74.06 -0.56 9.36 16 40 H 0.15 2.44 6.77 -2.91 -0.02 2.42 16 41 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.14 3.23 8.04 -2.91 -0.02 3.20 16 Total: -1.00 -69.12 374.69 5.46 -63.65 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.50 Total: 37.00 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 5.25 Total: 21.01 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.38 Total: -69.75 kcal Atomic # 8 Polarization: -86.72 SS G_CDS: -1.71 Total: -88.43 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -69.12 5.46 -63.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.557 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds