Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00117 * 2 1 4 4 O 1.20817 * 119.99856 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99844 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46688 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.46609 * 180.02562 * 6 5 3 8 8 C 1.36940 * 119.99633 * 264.71348 * 7 6 5 9 9 H 1.08000 * 120.00043 * 138.73586 * 8 7 6 10 10 C 1.38813 * 119.99775 * 318.73158 * 8 7 6 11 11 N 1.31622 * 119.99516 * 166.34586 * 10 8 7 12 12 Si 1.86797 * 120.00510 * 346.34692 * 10 8 7 13 13 H 1.48496 * 109.46955 * 91.16085 * 12 10 8 14 14 H 1.48497 * 109.47346 * 211.16447 * 12 10 8 15 15 H 1.48505 * 109.46795 * 331.16657 * 12 10 8 16 16 C 1.46498 * 120.00308 * 84.71882 * 7 6 5 17 17 H 1.08997 * 109.46810 * 358.56704 * 16 7 6 18 18 C 1.50693 * 109.47336 * 118.57150 * 16 7 6 19 19 O 1.20823 * 120.00192 * 359.72977 * 18 16 7 20 20 O 1.34229 * 119.99881 * 179.97438 * 18 16 7 21 21 C 1.45203 * 117.00265 * 179.72705 * 20 18 16 22 22 C 1.50702 * 109.46849 * 238.57483 * 16 7 6 23 23 C 1.38251 * 119.97193 * 291.84501 * 22 16 7 24 24 C 1.38200 * 120.02294 * 179.76904 * 23 22 16 25 25 C 1.38462 * 119.97535 * 0.50884 * 24 23 22 26 26 F 1.35094 * 120.02634 * 179.77005 * 25 24 23 27 27 C 1.38464 * 119.94780 * 359.74516 * 25 24 23 28 28 C 1.38197 * 119.97415 * 0.02562 * 27 25 24 29 29 H 1.09004 * 109.46877 * 299.99750 * 1 2 3 30 30 H 1.08998 * 109.47687 * 59.99720 * 1 2 3 31 31 H 1.08997 * 109.46945 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47073 * 60.00225 * 5 3 2 33 33 H 1.09006 * 109.47168 * 300.00517 * 5 3 2 34 34 H 1.08995 * 109.47042 * 60.00468 * 6 5 3 35 35 H 1.08998 * 109.46875 * 299.99556 * 6 5 3 36 36 H 0.97001 * 119.99921 * 179.97438 * 11 10 8 37 37 H 1.08991 * 109.47266 * 180.02562 * 21 20 18 38 38 H 1.09010 * 109.47013 * 300.00357 * 21 20 18 39 39 H 1.09001 * 109.47074 * 59.99629 * 21 20 18 40 40 H 1.07996 * 119.98693 * 0.02562 * 23 22 16 41 41 H 1.08001 * 120.01167 * 180.25318 * 24 23 22 42 42 H 1.07999 * 120.01411 * 179.97438 * 27 25 24 43 43 H 1.07994 * 119.98771 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8186 -0.0010 8 6 6.1421 2.9626 1.1795 9 1 7.0515 2.4057 1.3508 10 6 5.6616 3.8244 2.1558 11 7 6.1461 3.7694 3.3784 12 14 4.3276 5.0623 1.7347 13 1 2.9948 4.4617 1.9958 14 1 4.4962 6.2763 2.5730 15 1 4.4311 5.4328 0.3003 16 6 6.1997 2.7413 -1.2650 17 1 5.4973 2.6032 -2.0869 18 6 6.9736 4.0173 -1.4744 19 8 6.9119 4.9027 -0.6546 20 8 7.7275 4.1722 -2.5741 21 6 8.4405 5.4295 -2.7128 22 6 7.1547 1.5763 -1.2193 23 6 8.2428 1.6082 -0.3670 24 6 9.1165 0.5384 -0.3209 25 6 8.9077 -0.5610 -1.1363 26 9 9.7638 -1.6053 -1.0953 27 6 7.8205 -0.5895 -1.9933 28 6 6.9455 0.4794 -2.0343 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9557 0.7809 -0.8909 33 1 3.9564 0.7804 0.8891 34 1 3.6108 3.2355 0.8907 35 1 3.6100 3.2366 -0.8893 36 1 5.8106 4.3718 4.0606 37 1 9.0092 5.4240 -3.6426 38 1 7.7260 6.2526 -2.7292 39 1 9.1211 5.5560 -1.8709 40 1 8.4077 2.4675 0.2659 41 1 9.9641 0.5617 0.3480 42 1 7.6569 -1.4463 -2.6300 43 1 6.0973 0.4572 -2.7023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879472421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -148.866107 kcal Electronic energy + Delta-G solvation = -30671.715616 eV Core-core repulsion = 26212.597455 eV Total energy + Delta-G solvation = -4459.118161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.63292 -40.26938 -40.00839 -38.59691 -36.77040 -36.14453 -35.27668 -32.22504 -31.97872 -30.83151 -29.74645 -27.89267 -27.52383 -26.17835 -24.43094 -22.71929 -22.19433 -21.80161 -20.48697 -19.73186 -17.64326 -17.52825 -17.03642 -16.73134 -16.41695 -16.28769 -16.08508 -15.98637 -15.71666 -15.34086 -15.30970 -14.50596 -14.20182 -13.84376 -13.67986 -13.34362 -13.22474 -13.09636 -12.79423 -12.67027 -12.48138 -12.40337 -12.20275 -11.99370 -11.76218 -11.72453 -11.57159 -11.11184 -10.93159 -10.70268 -10.67605 -10.46321 -10.24658 -10.18177 -9.91360 -9.74986 -9.43658 -8.73901 -8.64346 -8.20443 -7.14140 -6.05857 -3.64936 1.44895 1.59399 2.48428 2.88601 2.99040 3.26924 3.37859 3.51573 3.61746 3.88366 4.49985 4.55100 4.76510 5.00965 5.09946 5.13223 5.16358 5.18106 5.20357 5.25998 5.39182 5.45425 5.47445 5.50361 5.52729 5.57865 5.64069 5.73824 5.82580 5.88990 5.97893 6.23053 6.31103 6.35065 6.41649 6.51051 6.62436 6.66082 6.89418 7.00571 7.21779 7.83672 8.00735 8.16407 8.55875 8.74024 9.56282 9.81076 11.05757 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008148 B = 0.005354 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.417010 B = 5228.207247 C = 6853.600805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.512 6.512 5 C -0.130 4.130 6 C 0.146 3.854 7 N -0.567 5.567 8 C -0.284 4.284 9 H 0.095 0.905 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.887 3.113 13 H -0.285 1.285 14 H -0.303 1.303 15 H -0.261 1.261 16 C 0.220 3.780 17 H 0.099 0.901 18 C 0.431 3.569 19 O -0.462 6.462 20 O -0.373 6.373 21 C 0.036 3.964 22 C -0.080 4.080 23 C -0.055 4.055 24 C -0.155 4.155 25 C 0.089 3.911 26 F -0.148 7.148 27 C -0.161 4.161 28 C -0.080 4.080 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.145 0.855 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -7.145 -12.380 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.305 3.695 4 O -0.400 6.400 5 C -0.170 4.170 6 C 0.021 3.979 7 N -0.286 5.286 8 C -0.411 4.411 9 H 0.112 0.888 10 C -0.145 4.145 11 N -0.534 5.534 12 Si 0.718 3.282 13 H -0.213 1.213 14 H -0.232 1.232 15 H -0.185 1.185 16 C 0.110 3.890 17 H 0.117 0.883 18 C 0.269 3.731 19 O -0.343 6.343 20 O -0.290 6.290 21 C -0.059 4.059 22 C -0.082 4.082 23 C -0.073 4.073 24 C -0.174 4.174 25 C 0.070 3.930 26 F -0.127 7.127 27 C -0.179 4.179 28 C -0.099 4.099 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.464 -6.467 -11.908 13.629 hybrid contribution -0.704 0.837 0.111 1.100 sum -2.168 -5.629 -11.796 13.249 Atomic orbital electron populations 1.23186 0.77294 1.03165 1.02324 1.86557 1.22806 1.34288 1.84428 1.24317 0.92652 0.80935 0.71588 1.90650 1.67467 1.36382 1.45481 1.22249 0.85195 1.03476 1.06104 1.21177 0.83373 0.91491 1.01892 1.44077 1.00441 1.82786 1.01313 1.18816 1.10890 1.21688 0.89748 0.88756 1.25449 0.97767 0.95801 0.95447 1.69764 1.43814 1.38292 1.01557 0.86842 0.80571 0.81369 0.79401 1.21318 1.23159 1.18521 1.19076 0.91531 0.86643 0.91785 0.88297 1.25384 0.77862 0.91116 0.78768 1.90688 1.59126 1.41949 1.42578 1.86593 1.58319 1.39376 1.44737 1.23068 0.96008 0.84746 1.02063 1.20009 0.95656 0.96021 0.96506 1.21267 0.92023 0.98462 0.95577 1.21125 1.01922 0.93649 1.00736 1.17715 0.90304 0.85446 0.99581 1.91452 1.69231 1.56290 1.95747 1.20931 0.95454 1.00461 1.01103 1.20758 0.98583 0.92216 0.98298 0.92115 0.92215 0.88512 0.88271 0.86681 0.90647 0.92971 0.92442 0.89169 0.92717 0.92378 0.83754 0.85189 0.85296 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.25 10.57 -39.27 -0.41 -5.67 16 3 C 0.46 7.74 7.96 36.01 0.29 8.02 16 4 O -0.51 -10.03 15.73 -18.74 -0.29 -10.32 16 5 C -0.13 -2.14 6.13 -27.88 -0.17 -2.31 16 6 C 0.15 2.93 3.43 -4.04 -0.01 2.92 16 7 N -0.57 -12.01 1.78 -168.31 -0.30 -12.31 16 8 C -0.28 -7.16 7.57 -15.06 -0.11 -7.27 16 9 H 0.10 2.50 5.08 -52.49 -0.27 2.23 16 10 C 0.06 1.62 5.39 -17.43 -0.09 1.52 16 11 N -0.90 -26.32 13.97 55.49 0.78 -25.55 16 12 Si 0.89 23.02 24.24 -169.99 -4.12 18.90 16 13 H -0.28 -7.32 6.62 56.52 0.37 -6.95 16 14 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 15 H -0.26 -6.79 7.06 56.52 0.40 -6.39 16 16 C 0.22 3.93 2.99 -70.24 -0.21 3.72 16 17 H 0.10 1.46 7.63 -51.93 -0.40 1.06 16 18 C 0.43 8.40 6.43 36.00 0.23 8.64 16 19 O -0.46 -10.82 14.51 -18.75 -0.27 -11.09 16 20 O -0.37 -6.19 10.48 -39.25 -0.41 -6.60 16 21 C 0.04 0.48 10.56 101.05 1.07 1.55 16 22 C -0.08 -1.30 4.85 -104.61 -0.51 -1.81 16 23 C -0.05 -0.96 7.48 -39.59 -0.30 -1.26 16 24 C -0.16 -2.45 10.03 -39.51 -0.40 -2.84 16 25 C 0.09 1.32 7.30 -39.42 -0.29 1.03 16 26 F -0.15 -2.20 17.27 2.25 0.04 -2.16 16 27 C -0.16 -2.11 10.03 -39.51 -0.40 -2.51 16 28 C -0.08 -1.07 9.67 -39.59 -0.38 -1.45 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 34 H 0.08 1.77 3.25 -51.93 -0.17 1.60 16 35 H 0.05 0.99 8.00 -51.93 -0.42 0.57 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 40 H 0.14 2.90 6.14 -52.49 -0.32 2.57 16 41 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.13 1.34 7.96 -52.49 -0.42 0.92 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -32.86 367.27 -5.06 -37.92 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.38 Total: 1.95 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.22 Total: 9.39 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.48 Total: -37.86 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.39 Total: -33.68 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.12 Total: 18.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.86 -5.06 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.943 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds