Wall clock time and date at job start Sat Apr 11 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99985 * 2 1 4 4 H 1.08999 * 109.47546 * 34.12993 * 3 2 1 5 5 C 1.52999 * 109.47364 * 274.12437 * 3 2 1 6 6 N 1.46503 * 109.47100 * 303.64688 * 5 3 2 7 7 S 1.65599 * 120.00037 * 165.49303 * 6 5 3 8 8 O 1.42092 * 106.40322 * 311.46035 * 7 6 5 9 9 O 1.42096 * 106.40422 * 178.53481 * 7 6 5 10 10 C 1.76204 * 107.21610 * 64.99769 * 7 6 5 11 11 C 1.38233 * 120.00000 * 269.72156 * 10 7 6 12 12 C 1.38238 * 119.99985 * 179.76482 * 11 10 7 13 13 C 1.38237 * 119.99785 * 0.49340 * 12 11 10 14 14 C 1.50697 * 119.99789 * 179.76546 * 13 12 11 15 15 C 1.50699 * 109.47182 * 270.02033 * 14 13 12 16 16 H 1.08002 * 120.00175 * 0.02562 * 15 14 13 17 17 C 1.37885 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47143 * 60.00184 * 19 17 15 21 21 H 1.48498 * 109.46729 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47122 * 299.99989 * 19 17 15 23 23 C 1.38231 * 120.00172 * 359.78678 * 13 12 11 24 24 C 1.38238 * 120.00038 * 359.95390 * 23 13 12 25 25 C 1.53002 * 109.47096 * 154.12496 * 3 2 1 26 26 C 1.52998 * 117.50156 * 8.74904 * 25 3 2 27 27 C 1.52994 * 117.50322 * 300.08876 * 25 3 2 28 28 H 1.09004 * 109.47305 * 175.10483 * 1 2 3 29 29 H 1.09000 * 109.47086 * 295.10848 * 1 2 3 30 30 H 1.09000 * 109.47139 * 55.10682 * 1 2 3 31 31 H 1.08993 * 109.47544 * 183.64349 * 5 3 2 32 32 H 1.09006 * 109.46532 * 63.64252 * 5 3 2 33 33 H 0.97004 * 119.99987 * 345.49147 * 6 5 3 34 34 H 1.07998 * 119.99918 * 0.02562 * 11 10 7 35 35 H 1.08004 * 119.99958 * 180.25643 * 12 11 10 36 36 H 1.08997 * 109.47294 * 30.02397 * 14 13 12 37 37 H 1.08999 * 109.47113 * 150.01790 * 14 13 12 38 38 H 0.97003 * 119.99508 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.00104 * 179.97438 * 23 13 12 40 40 H 1.07991 * 120.00098 * 179.97438 * 24 23 13 41 41 H 1.09003 * 115.54984 * 154.41578 * 25 3 2 42 42 H 1.09002 * 117.49381 * 0.02562 * 26 25 3 43 43 H 1.08993 * 117.50534 * 145.01404 * 26 25 3 44 44 H 1.09001 * 117.50194 * 214.98385 * 27 25 3 45 45 H 1.09004 * 117.49378 * 359.97116 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3809 1.9834 0.5766 5 6 2.1228 1.8136 -1.4387 6 7 2.8963 0.8576 -2.2351 7 16 2.8801 0.9529 -3.8883 8 8 1.5157 1.0580 -4.2708 9 8 3.7421 -0.0746 -4.3579 10 6 3.6398 2.4801 -4.3302 11 6 2.8706 3.6204 -4.4675 12 6 3.4672 4.8196 -4.8094 13 6 4.8317 4.8762 -5.0240 14 6 5.4813 6.1824 -5.4019 15 6 5.4936 6.3218 -6.9023 16 1 5.0726 5.5426 -7.5205 17 6 6.0423 7.4440 -7.4861 18 7 6.5544 8.3930 -6.7333 19 14 6.0581 7.6164 -9.3460 20 1 4.6642 7.5912 -9.8573 21 1 6.6982 8.9036 -9.7183 22 1 6.8239 6.4918 -9.9408 23 6 5.6001 3.7347 -4.8923 24 6 5.0042 2.5367 -4.5452 25 6 3.4033 1.2435 0.6295 26 6 3.9820 -0.1407 0.9296 27 6 3.5040 0.7543 2.0757 28 1 -0.3634 -1.0239 -0.0877 29 1 -0.3633 0.4361 0.9306 30 1 -0.3633 0.5879 -0.8429 31 1 2.6248 2.7811 -1.4441 32 1 1.1255 1.9193 -1.8658 33 1 3.4179 0.1689 -1.7940 34 1 1.8041 3.5753 -4.3035 35 1 2.8668 5.7114 -4.9126 36 1 4.9192 7.0077 -4.9649 37 1 6.5046 6.2011 -5.0268 38 1 6.9401 9.1827 -7.1439 39 1 6.6660 3.7789 -5.0604 40 1 5.6044 1.6448 -4.4427 41 1 4.0978 2.0212 0.3118 42 1 3.3704 -1.0072 0.6781 43 1 5.0572 -0.2736 0.8097 44 1 4.2649 1.2100 2.7093 45 1 2.5776 0.4771 2.5788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885207911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:42 Heat of formation + Delta-G solvation = -80.228516 kcal Electronic energy + Delta-G solvation = -27189.489841 eV Core-core repulsion = 23299.561206 eV Total energy + Delta-G solvation = -3889.928635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.52793 -38.80450 -37.09919 -36.34159 -35.72171 -34.93511 -33.68242 -31.56160 -30.58113 -29.38694 -27.43418 -26.87752 -23.74678 -23.66529 -22.61643 -22.33388 -20.89924 -20.65214 -19.41911 -17.86988 -17.44411 -17.07823 -16.50793 -16.44338 -15.86570 -15.42784 -15.15539 -14.98135 -14.76176 -14.38203 -14.24301 -13.84551 -13.64042 -13.43076 -13.18946 -13.10326 -12.81846 -12.23968 -11.98662 -11.89804 -11.87473 -11.82941 -11.70092 -11.59260 -11.58496 -11.49310 -10.96588 -10.90781 -10.68233 -10.53801 -10.48495 -10.40746 -9.87989 -9.78889 -9.70160 -9.50744 -8.59646 -8.54388 -8.39199 -6.18071 -4.23124 0.54912 1.32864 1.78786 3.04906 3.25521 3.29644 3.32836 3.34814 3.61637 3.80502 4.12085 4.23701 4.36790 4.39405 4.54249 4.65339 4.79475 4.93445 5.03853 5.09183 5.10637 5.15740 5.22248 5.24144 5.27601 5.37781 5.42077 5.45227 5.66591 5.69993 5.71645 5.84879 5.85654 5.90674 6.00236 6.24427 6.32702 6.50583 6.77202 6.83240 6.89666 6.98133 7.28131 7.42303 7.57983 7.76915 8.12321 8.81429 9.41840 10.91938 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.002596 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.719510 B =10784.236278 C =11332.916549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.113 3.887 4 H 0.079 0.921 5 C 0.098 3.902 6 N -1.108 6.108 7 S 2.699 3.301 8 O -0.967 6.967 9 O -0.966 6.966 10 C -0.704 4.704 11 C -0.026 4.026 12 C -0.146 4.146 13 C 0.026 3.974 14 C 0.040 3.960 15 C -0.518 4.518 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.146 4.146 24 C -0.021 4.021 25 C -0.161 4.161 26 C -0.167 4.167 27 C -0.174 4.174 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.419 0.581 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.133 -14.383 17.798 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.294 6.294 3 C 0.054 3.946 4 H 0.097 0.903 5 C -0.030 4.030 6 N -0.868 5.868 7 S 2.791 3.209 8 O -0.957 6.957 9 O -0.957 6.957 10 C -0.793 4.793 11 C -0.045 4.045 12 C -0.165 4.165 13 C 0.026 3.974 14 C 0.003 3.997 15 C -0.556 4.556 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.165 4.165 24 C -0.041 4.041 25 C -0.179 4.179 26 C -0.204 4.204 27 C -0.211 4.211 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.255 0.745 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.405 -14.863 17.145 24.562 hybrid contribution 0.464 0.951 -0.815 1.336 sum -8.941 -13.912 16.330 23.241 Atomic orbital electron populations 1.22836 0.80929 1.03084 1.00134 1.87918 1.19681 1.26883 1.94889 1.21734 0.93603 0.85422 0.93822 0.90325 1.21786 0.96526 0.92300 0.92348 1.55313 1.62636 1.43460 1.25405 1.01520 0.73687 0.73752 0.71924 1.93543 1.33843 1.87121 1.81186 1.93563 1.67958 1.55458 1.78694 1.30358 1.05172 1.20185 1.23597 1.20775 0.98636 0.91530 0.93594 1.21242 0.95218 0.97739 1.02252 1.21111 0.93441 0.97716 0.85153 1.18527 0.96237 0.87759 0.97162 1.20937 1.39840 1.04706 0.90164 0.92342 1.25001 0.94924 0.95560 0.98619 1.69937 1.38956 1.08674 1.35434 0.86535 0.78522 0.77438 0.84886 1.20036 1.21096 1.20022 1.21250 1.00714 0.92230 1.02267 1.20774 0.92222 0.98161 0.92916 1.22406 0.96756 0.99975 0.98779 1.22924 1.00897 0.94344 1.02245 1.22915 1.03210 1.04239 0.90709 0.89561 0.94069 0.93439 0.90365 0.90100 0.74528 0.85348 0.85382 0.94741 0.94741 0.92566 0.85372 0.85260 0.86204 0.87502 0.88866 0.88832 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.80 101.05 1.09 1.27 16 2 O -0.38 -3.20 8.48 -35.23 -0.30 -3.50 16 3 C 0.11 0.86 2.74 -26.73 -0.07 0.78 16 4 H 0.08 0.48 7.88 -51.93 -0.41 0.07 16 5 C 0.10 0.85 5.91 -4.04 -0.02 0.83 16 6 N -1.11 -11.55 5.67 -10.61 -0.06 -11.61 16 7 S 2.70 37.86 5.74 -107.50 -0.62 37.24 16 8 O -0.97 -15.65 16.75 -57.17 -0.96 -16.61 16 9 O -0.97 -15.98 17.28 -57.17 -0.99 -16.97 16 10 C -0.70 -10.97 5.95 -39.58 -0.24 -11.21 16 11 C -0.03 -0.41 9.52 -39.58 -0.38 -0.79 16 12 C -0.15 -2.66 9.70 -39.58 -0.38 -3.04 16 13 C 0.03 0.54 5.07 -104.63 -0.53 0.01 16 14 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 15 C -0.52 -14.04 9.09 -34.44 -0.31 -14.35 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 24 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 25 C -0.16 -1.19 5.04 -90.62 -0.46 -1.65 16 26 C -0.17 -1.25 9.54 -26.70 -0.25 -1.51 16 27 C -0.17 -1.18 10.19 -26.70 -0.27 -1.46 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.32 7.53 -51.93 -0.39 -0.07 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.70 7.21 -51.93 -0.37 0.33 16 33 H 0.42 3.96 7.79 -34.47 -0.27 3.69 16 34 H 0.13 1.74 7.61 -52.49 -0.40 1.34 16 35 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 36 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.13 1.83 7.62 -52.49 -0.40 1.43 16 41 H 0.12 0.86 8.11 -51.93 -0.42 0.44 16 42 H 0.11 0.88 7.06 -51.93 -0.37 0.51 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -33.01 389.42 -10.97 -43.98 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.79 Total: 2.74 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: -2.84 Total: -32.50 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.68 Total: -36.34 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -2.24 Total: -37.07 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 37.86 SS G_CDS: -0.62 Total: 37.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.01 -10.97 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885207911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.250 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds