Wall clock time and date at job start Sat Apr 11 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99985 * 2 1 4 4 H 1.08999 * 109.47546 * 34.12993 * 3 2 1 5 5 C 1.52999 * 109.47364 * 274.12437 * 3 2 1 6 6 N 1.46503 * 109.47100 * 303.64688 * 5 3 2 7 7 S 1.65599 * 120.00037 * 165.49303 * 6 5 3 8 8 O 1.42092 * 106.40322 * 311.46035 * 7 6 5 9 9 O 1.42096 * 106.40422 * 178.53481 * 7 6 5 10 10 C 1.76204 * 107.21610 * 64.99769 * 7 6 5 11 11 C 1.38233 * 120.00000 * 269.72156 * 10 7 6 12 12 C 1.38238 * 119.99985 * 179.76482 * 11 10 7 13 13 C 1.38237 * 119.99785 * 0.49340 * 12 11 10 14 14 C 1.50697 * 119.99789 * 179.76546 * 13 12 11 15 15 C 1.50699 * 109.47182 * 270.02033 * 14 13 12 16 16 H 1.08002 * 120.00175 * 0.02562 * 15 14 13 17 17 C 1.37885 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47143 * 60.00184 * 19 17 15 21 21 H 1.48498 * 109.46729 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47122 * 299.99989 * 19 17 15 23 23 C 1.38231 * 120.00172 * 359.78678 * 13 12 11 24 24 C 1.38238 * 120.00038 * 359.95390 * 23 13 12 25 25 C 1.53002 * 109.47096 * 154.12496 * 3 2 1 26 26 C 1.52998 * 117.50156 * 8.74904 * 25 3 2 27 27 C 1.52994 * 117.50322 * 300.08876 * 25 3 2 28 28 H 1.09004 * 109.47305 * 175.10483 * 1 2 3 29 29 H 1.09000 * 109.47086 * 295.10848 * 1 2 3 30 30 H 1.09000 * 109.47139 * 55.10682 * 1 2 3 31 31 H 1.08993 * 109.47544 * 183.64349 * 5 3 2 32 32 H 1.09006 * 109.46532 * 63.64252 * 5 3 2 33 33 H 0.97004 * 119.99987 * 345.49147 * 6 5 3 34 34 H 1.07998 * 119.99918 * 0.02562 * 11 10 7 35 35 H 1.08004 * 119.99958 * 180.25643 * 12 11 10 36 36 H 1.08997 * 109.47294 * 30.02397 * 14 13 12 37 37 H 1.08999 * 109.47113 * 150.01790 * 14 13 12 38 38 H 0.97003 * 119.99508 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.00104 * 179.97438 * 23 13 12 40 40 H 1.07991 * 120.00098 * 179.97438 * 24 23 13 41 41 H 1.09003 * 115.54984 * 154.41578 * 25 3 2 42 42 H 1.09002 * 117.49381 * 0.02562 * 26 25 3 43 43 H 1.08993 * 117.50534 * 145.01404 * 26 25 3 44 44 H 1.09001 * 117.50194 * 214.98385 * 27 25 3 45 45 H 1.09004 * 117.49378 * 359.97116 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3809 1.9834 0.5766 5 6 2.1228 1.8136 -1.4387 6 7 2.8963 0.8576 -2.2351 7 16 2.8801 0.9529 -3.8883 8 8 1.5157 1.0580 -4.2708 9 8 3.7421 -0.0746 -4.3579 10 6 3.6398 2.4801 -4.3302 11 6 2.8706 3.6204 -4.4675 12 6 3.4672 4.8196 -4.8094 13 6 4.8317 4.8762 -5.0240 14 6 5.4813 6.1824 -5.4019 15 6 5.4936 6.3218 -6.9023 16 1 5.0726 5.5426 -7.5205 17 6 6.0423 7.4440 -7.4861 18 7 6.5544 8.3930 -6.7333 19 14 6.0581 7.6164 -9.3460 20 1 4.6642 7.5912 -9.8573 21 1 6.6982 8.9036 -9.7183 22 1 6.8239 6.4918 -9.9408 23 6 5.6001 3.7347 -4.8923 24 6 5.0042 2.5367 -4.5452 25 6 3.4033 1.2435 0.6295 26 6 3.9820 -0.1407 0.9296 27 6 3.5040 0.7543 2.0757 28 1 -0.3634 -1.0239 -0.0877 29 1 -0.3633 0.4361 0.9306 30 1 -0.3633 0.5879 -0.8429 31 1 2.6248 2.7811 -1.4441 32 1 1.1255 1.9193 -1.8658 33 1 3.4179 0.1689 -1.7940 34 1 1.8041 3.5753 -4.3035 35 1 2.8668 5.7114 -4.9126 36 1 4.9192 7.0077 -4.9649 37 1 6.5046 6.2011 -5.0268 38 1 6.9401 9.1827 -7.1439 39 1 6.6660 3.7789 -5.0604 40 1 5.6044 1.6448 -4.4427 41 1 4.0978 2.0212 0.3118 42 1 3.3704 -1.0072 0.6781 43 1 5.0572 -0.2736 0.8097 44 1 4.2649 1.2100 2.7093 45 1 2.5776 0.4771 2.5788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885207911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:41 Heat of formation + Delta-G solvation = -101.486102 kcal Electronic energy + Delta-G solvation = -27190.411639 eV Core-core repulsion = 23299.561206 eV Total energy + Delta-G solvation = -3890.850433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.23443 -40.10516 -38.32692 -36.95813 -36.89012 -35.75130 -35.57518 -33.31256 -31.95263 -30.05956 -29.23979 -27.41389 -25.58827 -24.34343 -23.69277 -23.15263 -22.46384 -21.23260 -20.52017 -19.02144 -18.60389 -18.45555 -17.87208 -17.09170 -16.84231 -16.83350 -16.30482 -15.99019 -15.87245 -15.59625 -15.27344 -15.13232 -14.63285 -14.44278 -14.31166 -14.04653 -13.96761 -13.85780 -13.40607 -13.38089 -13.21196 -13.14531 -12.78597 -12.66662 -12.65651 -12.34832 -12.18473 -12.14022 -12.10576 -12.02921 -11.69546 -11.43539 -11.21480 -10.96047 -10.65165 -10.52925 -10.34382 -9.95437 -9.94122 -8.27299 -6.39957 -0.60479 -0.05658 0.40634 1.38436 1.39807 1.48311 2.03902 2.34803 2.58079 2.71834 2.86943 3.05396 3.08035 3.33342 3.67849 3.80863 3.89392 3.98888 4.10991 4.16714 4.24010 4.37690 4.47701 4.48666 4.50098 4.52717 4.59852 4.71348 4.76462 4.82228 4.91046 4.92200 4.95555 4.98033 5.11978 5.14713 5.25556 5.26322 5.33279 5.34246 5.43945 5.66949 5.87082 5.93016 6.07299 6.10083 6.32532 6.71725 7.29072 8.82552 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.002596 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.719510 B =10784.236278 C =11332.916549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.390 6.390 3 C 0.115 3.885 4 H 0.098 0.902 5 C 0.086 3.914 6 N -1.094 6.094 7 S 2.725 3.275 8 O -0.984 6.984 9 O -0.989 6.989 10 C -0.698 4.698 11 C -0.019 4.019 12 C -0.153 4.153 13 C -0.003 4.003 14 C 0.049 3.951 15 C -0.535 4.535 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.155 4.155 24 C -0.019 4.019 25 C -0.165 4.165 26 C -0.175 4.175 27 C -0.168 4.168 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.426 0.574 34 H 0.157 0.843 35 H 0.131 0.869 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.267 0.733 39 H 0.128 0.872 40 H 0.153 0.847 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -15.638 18.307 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.309 6.309 3 C 0.056 3.944 4 H 0.115 0.885 5 C -0.040 4.040 6 N -0.857 5.857 7 S 2.815 3.185 8 O -0.974 6.974 9 O -0.979 6.979 10 C -0.786 4.786 11 C -0.038 4.038 12 C -0.172 4.172 13 C -0.003 4.003 14 C 0.012 3.988 15 C -0.573 4.573 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.174 4.174 24 C -0.038 4.038 25 C -0.183 4.183 26 C -0.212 4.212 27 C -0.205 4.205 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.264 0.736 34 H 0.175 0.825 35 H 0.149 0.851 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.140 0.860 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.552 -16.112 17.654 26.127 hybrid contribution 0.760 1.249 -0.850 1.691 sum -9.793 -14.863 16.804 24.479 Atomic orbital electron populations 1.22968 0.80148 1.03596 1.00863 1.87905 1.20640 1.27419 1.94928 1.21781 0.94004 0.85535 0.93089 0.88462 1.22083 0.96597 0.92421 0.92888 1.54999 1.62795 1.43933 1.24005 1.00734 0.72714 0.72507 0.72498 1.93523 1.34595 1.87073 1.82164 1.93531 1.68499 1.55986 1.79911 1.30765 1.04944 1.20928 1.21930 1.21039 1.00025 0.90516 0.92196 1.21307 0.94350 0.99028 1.02512 1.20810 0.94668 0.96525 0.88303 1.18253 0.95079 0.89630 0.95853 1.21272 1.39614 1.04640 0.91766 0.92842 1.25850 0.94500 0.95234 1.03277 1.70045 1.39796 1.09230 1.37353 0.85535 0.78785 0.77659 0.79337 1.19351 1.20369 1.19444 1.21292 1.00811 0.92553 1.02753 1.21002 0.92872 0.98006 0.91899 1.22456 0.96782 0.99811 0.99246 1.22922 1.00990 0.94212 1.03047 1.22947 1.03396 1.03598 0.90509 0.89120 0.92580 0.93620 0.89174 0.89692 0.73642 0.82508 0.85110 0.96725 0.96916 0.92363 0.85398 0.82940 0.85991 0.88350 0.88547 0.88126 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.80 113.37 1.22 1.45 16 2 O -0.39 -5.82 8.48 -148.98 -1.26 -7.08 16 3 C 0.12 1.46 2.74 30.59 0.08 1.54 16 4 H 0.10 0.89 7.88 -2.39 -0.02 0.87 16 5 C 0.09 1.29 5.91 86.38 0.51 1.80 16 6 N -1.09 -20.21 5.67 -187.49 -1.06 -21.27 16 7 S 2.73 70.21 5.74 -56.49 -0.32 69.88 16 8 O -0.98 -29.41 16.75 -128.00 -2.14 -31.56 16 9 O -0.99 -30.66 17.28 -128.00 -2.21 -32.87 16 10 C -0.70 -20.36 5.95 22.27 0.13 -20.23 16 11 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 12 C -0.15 -5.53 9.70 22.27 0.22 -5.32 16 13 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 14 C 0.05 2.48 5.10 29.10 0.15 2.62 16 15 C -0.54 -29.68 9.09 25.60 0.23 -29.45 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.01 0.58 5.46 84.66 0.46 1.05 16 18 N -0.92 -53.99 13.29 21.45 0.28 -53.70 16 19 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 C -0.16 -5.75 9.70 22.27 0.22 -5.53 16 24 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 25 C -0.16 -2.09 5.04 -10.80 -0.05 -2.14 16 26 C -0.17 -2.34 9.54 30.62 0.29 -2.05 16 27 C -0.17 -1.96 10.19 30.61 0.31 -1.65 16 28 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.53 7.53 -2.39 -0.02 0.51 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.23 7.21 -2.38 -0.02 1.22 16 33 H 0.43 7.10 7.79 -96.74 -0.75 6.35 16 34 H 0.16 3.78 7.61 -2.91 -0.02 3.76 16 35 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.01 0.77 8.09 -2.39 -0.02 0.75 16 37 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 38 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.15 4.00 7.62 -2.92 -0.02 3.98 16 41 H 0.12 1.49 8.11 -2.39 -0.02 1.48 16 42 H 0.10 1.50 7.06 -2.39 -0.02 1.48 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.56 389.42 -0.36 -70.92 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.24 Total: 19.02 kcal Atomic # 6 Polarization: -62.93 SS G_CDS: 4.10 Total: -58.83 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -0.78 Total: -74.98 kcal Atomic # 8 Polarization: -65.89 SS G_CDS: -5.62 Total: -71.51 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 70.21 SS G_CDS: -0.32 Total: 69.88 kcal Total: -70.56 -0.36 -70.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885207911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.568 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds