Wall clock time and date at job start Sat Apr 11 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00188 * 2 1 4 4 C 1.52996 * 109.47638 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47894 * 185.00343 * 4 3 2 6 6 N 1.46506 * 109.46836 * 64.99836 * 4 3 2 7 7 C 1.34772 * 119.99532 * 85.00698 * 6 4 3 8 8 O 1.21756 * 120.00521 * 359.97438 * 7 6 4 9 9 C 1.46242 * 119.99650 * 179.97438 * 7 6 4 10 10 S 1.75663 * 125.22992 * 359.69368 * 9 7 6 11 11 C 1.75476 * 92.09354 * 179.97438 * 10 9 7 12 12 C 1.32764 * 111.35752 * 0.32445 * 11 10 9 13 13 C 1.39546 * 125.22722 * 179.97438 * 9 7 6 14 14 C 1.40542 * 123.71306 * 0.02562 * 13 9 7 15 15 H 1.08004 * 119.99826 * 336.48260 * 14 13 9 16 16 C 1.40305 * 119.99937 * 156.49100 * 14 13 9 17 17 N 1.30642 * 120.00096 * 350.11525 * 16 14 13 18 18 Si 1.86803 * 119.99926 * 170.12382 * 16 14 13 19 19 H 1.48498 * 109.47211 * 94.80790 * 18 16 14 20 20 H 1.48501 * 109.46969 * 214.80876 * 18 16 14 21 21 H 1.48498 * 109.46847 * 334.80420 * 18 16 14 22 22 C 1.53007 * 109.46815 * 305.00574 * 4 3 2 23 23 H 1.08998 * 109.52623 * 59.87212 * 22 4 3 24 24 C 1.53180 * 109.51886 * 179.97438 * 22 4 3 25 25 C 1.53174 * 109.03673 * 176.88378 * 24 22 4 26 26 C 1.53095 * 109.16076 * 303.02026 * 25 24 22 27 27 O 1.42898 * 109.42867 * 57.60388 * 26 25 24 28 28 C 1.42907 * 114.09409 * 298.86009 * 27 26 25 29 29 H 1.09005 * 109.47409 * 59.99840 * 1 2 3 30 30 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47288 * 299.99705 * 1 2 3 32 32 H 1.08996 * 109.46867 * 59.99895 * 3 2 1 33 33 H 1.08997 * 109.47228 * 300.00140 * 3 2 1 34 34 H 0.97001 * 120.00135 * 264.99912 * 6 4 3 35 35 H 1.07994 * 124.32160 * 180.02562 * 11 10 9 36 36 H 1.08010 * 122.78062 * 179.77415 * 12 11 10 37 37 H 0.97005 * 119.99962 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.54651 * 57.01808 * 24 22 4 39 39 H 1.09003 * 109.54086 * 296.74578 * 24 22 4 40 40 H 1.08998 * 109.52526 * 183.10920 * 25 24 22 41 41 H 1.09003 * 109.57770 * 62.95231 * 25 24 22 42 42 H 1.09009 * 109.47828 * 177.58898 * 26 25 24 43 43 H 1.09000 * 109.48035 * 297.60865 * 26 25 24 44 44 H 1.09000 * 109.47038 * 301.15441 * 28 27 26 45 45 H 1.09000 * 109.48981 * 181.13361 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9785 2.1765 0.0890 6 7 3.9756 0.5645 -1.2528 7 6 4.1644 1.3231 -2.3506 8 8 3.9687 2.5239 -2.3019 9 6 4.6043 0.7041 -3.6003 10 16 4.9336 -1.0070 -3.8226 11 6 5.3585 -0.7720 -5.5088 12 6 5.2613 0.5051 -5.8585 13 6 4.8324 1.3828 -4.7981 14 6 4.6647 2.7695 -4.9531 15 1 4.0076 3.3116 -4.2891 16 6 5.3509 3.4498 -5.9705 17 7 6.2870 2.8400 -6.6476 18 14 4.9260 5.2274 -6.3565 19 1 5.8453 6.1282 -5.6158 20 1 5.0692 5.4649 -7.8154 21 1 3.5258 5.5021 -5.9455 22 6 3.9790 0.3193 1.1806 23 1 3.5346 -0.6721 1.0930 24 6 5.5059 0.1972 1.1807 25 6 5.9428 -0.6052 2.4102 26 6 5.4148 0.0819 3.6723 27 8 3.9922 0.1915 3.5940 28 6 3.5269 0.9708 2.4902 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 4.1313 -0.3922 -1.2917 35 1 5.6650 -1.5643 -6.1757 36 1 5.4840 0.8571 -6.8550 37 1 6.7617 3.3104 -7.3508 38 1 5.9513 1.1914 1.2170 39 1 5.8306 -0.3166 0.2758 40 1 7.0312 -0.6500 2.4480 41 1 5.5386 -1.6157 2.3495 42 1 5.6863 -0.5079 4.5479 43 1 5.8521 1.0770 3.7544 44 1 3.9393 1.9776 2.5568 45 1 2.4383 1.0216 2.5141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894813842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:22 Heat of formation + Delta-G solvation = -120.971542 kcal Electronic energy + Delta-G solvation = -27987.765111 eV Core-core repulsion = 24096.069725 eV Total energy + Delta-G solvation = -3891.695385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.88834 -38.37188 -37.42979 -36.06281 -34.87135 -33.05495 -32.80462 -31.42080 -29.11226 -28.44796 -26.45297 -25.79848 -24.79221 -24.05711 -22.31320 -21.09843 -20.07597 -19.79132 -18.75509 -17.62025 -16.61810 -16.33314 -15.87727 -15.69094 -15.48875 -15.34261 -15.24599 -14.76894 -14.61011 -14.17431 -13.89663 -13.66347 -13.39169 -13.07898 -12.61992 -12.48017 -12.39067 -12.10291 -12.03599 -11.80567 -11.70403 -11.43591 -11.43230 -11.16299 -11.10411 -10.99424 -10.81353 -10.43437 -10.36730 -10.29077 -10.13812 -9.64101 -9.51675 -9.47351 -9.23598 -8.42932 -8.23110 -7.48535 -7.12595 -7.04530 -4.52307 2.16509 2.94798 2.98410 3.06714 3.14471 3.64849 3.78071 3.80810 3.85368 3.90221 4.14276 4.43368 4.69783 4.77963 4.89024 5.01901 5.13329 5.23522 5.27501 5.31178 5.38169 5.41806 5.48935 5.58460 5.65477 5.67845 5.70871 5.76759 5.83613 5.97008 6.04470 6.07508 6.09187 6.26218 6.43073 6.70349 6.84116 7.12691 7.17343 7.21070 7.25371 7.37863 7.49432 7.71491 8.36145 8.47262 8.61079 8.79493 9.59425 9.86506 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003429 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.148266 B = 8162.791014 C = 8401.972893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.047 3.953 4 C 0.166 3.834 5 H 0.096 0.904 6 N -0.735 5.735 7 C 0.603 3.397 8 O -0.568 6.568 9 C -0.428 4.428 10 S -0.048 6.048 11 C -0.207 4.207 12 C -0.100 4.100 13 C 0.141 3.859 14 C -0.378 4.378 15 H 0.111 0.889 16 C 0.067 3.933 17 N -0.779 5.779 18 Si 0.924 3.076 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.255 1.255 22 C -0.124 4.124 23 H 0.092 0.908 24 C -0.117 4.117 25 C -0.154 4.154 26 C 0.059 3.941 27 O -0.382 6.382 28 C 0.070 3.930 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.393 0.607 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.287 0.713 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 -3.922 11.624 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.031 4.031 4 C 0.060 3.940 5 H 0.113 0.887 6 N -0.388 5.388 7 C 0.400 3.600 8 O -0.452 6.452 9 C -0.547 4.547 10 S 0.207 5.793 11 C -0.341 4.341 12 C -0.133 4.133 13 C 0.129 3.871 14 C -0.409 4.409 15 H 0.129 0.871 16 C -0.154 4.154 17 N -0.403 5.403 18 Si 0.748 3.252 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.179 1.179 22 C -0.143 4.143 23 H 0.110 0.890 24 C -0.155 4.155 25 C -0.192 4.192 26 C -0.018 4.018 27 O -0.301 6.301 28 C -0.007 4.007 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.279 -4.535 12.529 13.722 hybrid contribution 0.146 1.669 -1.569 2.295 sum -3.134 -2.867 10.960 11.754 Atomic orbital electron populations 1.22686 0.81766 1.02315 0.99626 1.87881 1.19016 1.27801 1.95328 1.23121 0.94771 0.84827 1.00404 1.20689 0.91102 0.97891 0.84357 0.88651 1.45743 1.72594 1.10893 1.09527 1.16843 0.76024 0.85519 0.81638 1.90639 1.55332 1.14669 1.84548 1.22585 1.41122 0.93452 0.97525 1.82760 1.76336 1.11155 1.09075 1.24958 1.10851 1.00115 0.98137 1.21722 0.99074 0.91308 1.01147 1.17930 0.87449 0.93612 0.88062 1.20024 1.19124 0.92491 1.09222 0.87119 1.26370 0.93210 1.02026 0.93805 1.69677 1.15339 1.38851 1.16442 0.86007 0.80856 0.80344 0.78016 1.19038 1.19891 1.17860 1.21958 0.96469 1.01527 0.94390 0.88959 1.21627 0.94791 1.00767 0.98320 1.22185 1.01159 1.00399 0.95474 1.22582 0.81520 0.99751 0.97904 1.87923 1.21306 1.73176 1.47657 1.22600 0.99722 0.93353 0.85009 0.94237 0.89970 0.94572 0.93285 0.92268 0.77357 0.84561 0.83782 0.90150 0.91778 0.90719 0.90981 0.91062 0.89215 0.93331 0.93163 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.72 9.77 -35.23 -0.34 -6.07 16 3 C 0.05 0.71 5.25 37.16 0.19 0.90 16 4 C 0.17 2.65 1.95 -67.93 -0.13 2.51 16 5 H 0.10 1.63 7.58 -51.93 -0.39 1.24 16 6 N -0.74 -14.06 4.38 -55.24 -0.24 -14.30 16 7 C 0.60 14.42 7.73 -13.05 -0.10 14.32 16 8 O -0.57 -15.01 14.11 5.14 0.07 -14.94 16 9 C -0.43 -10.75 6.51 -35.88 -0.23 -10.98 16 10 S -0.05 -1.04 22.25 -107.50 -2.39 -3.43 16 11 C -0.21 -4.50 11.07 28.86 0.32 -4.19 16 12 C -0.10 -2.43 9.04 -39.13 -0.35 -2.79 16 13 C 0.14 3.73 5.68 -106.21 -0.60 3.13 16 14 C -0.38 -10.11 8.51 -37.94 -0.32 -10.43 16 15 H 0.11 3.10 6.04 -52.48 -0.32 2.79 16 16 C 0.07 1.63 5.39 -17.28 -0.09 1.54 16 17 N -0.78 -18.75 10.81 55.57 0.60 -18.15 16 18 Si 0.92 18.43 29.57 -169.99 -5.03 13.41 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 C -0.12 -1.65 1.83 -90.48 -0.17 -1.82 16 23 H 0.09 1.32 7.56 -51.93 -0.39 0.93 16 24 C -0.12 -1.52 5.10 -26.55 -0.14 -1.65 16 25 C -0.15 -1.65 6.14 -26.59 -0.16 -1.81 16 26 C 0.06 0.61 6.84 37.21 0.25 0.87 16 27 O -0.38 -4.81 10.77 -35.23 -0.38 -5.19 16 28 C 0.07 0.84 5.71 37.20 0.21 1.05 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.61 6.78 -51.93 -0.35 0.26 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 7.23 7.48 -40.82 -0.31 6.93 16 35 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 36 H 0.14 3.48 6.40 -52.48 -0.34 3.15 16 37 H 0.29 6.19 8.29 -40.82 -0.34 5.86 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.06 7.56 -51.93 -0.39 0.67 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 1.07 6.70 -51.93 -0.35 0.72 16 LS Contribution 374.59 15.07 5.64 5.64 Total: -1.00 -29.15 374.59 -8.90 -38.04 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.62 Total: 12.83 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.21 Total: -7.85 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.36 Total: -32.45 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.65 Total: -26.20 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.39 Total: -3.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.15 -8.90 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894813842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.928 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds