Wall clock time and date at job start Sat Apr 11 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00393 * 2 1 4 4 C 1.52997 * 109.47533 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46908 * 64.99805 * 4 3 2 6 6 C 1.46502 * 120.00232 * 264.80823 * 5 4 3 7 7 C 1.50701 * 109.47577 * 275.99041 * 6 5 4 8 8 H 1.07999 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00091 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99912 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00098 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47489 * 89.99709 * 11 9 7 13 13 H 1.48499 * 109.47118 * 210.00031 * 11 9 7 14 14 H 1.48498 * 109.46985 * 329.99461 * 11 9 7 15 15 C 1.34774 * 120.00135 * 84.81333 * 5 4 3 16 16 O 1.21548 * 120.00045 * 5.16395 * 15 5 4 17 17 C 1.47872 * 120.00273 * 185.16040 * 15 5 4 18 18 C 1.39685 * 120.05702 * 311.73340 * 17 15 5 19 19 C 1.38281 * 120.12950 * 179.97438 * 18 17 15 20 20 F 1.35097 * 119.87575 * 180.02562 * 19 18 17 21 21 C 1.38302 * 120.24868 * 359.97438 * 19 18 17 22 22 C 1.39695 * 120.11308 * 0.02562 * 21 19 18 23 23 C 1.47744 * 120.06473 * 179.97438 * 22 21 19 24 24 O 1.21474 * 120.00098 * 180.02562 * 23 22 21 25 25 O 1.34713 * 120.00320 * 0.02562 * 23 22 21 26 26 C 1.45204 * 116.99818 * 179.97438 * 25 23 22 27 27 C 1.39280 * 120.05899 * 131.70811 * 17 15 5 28 28 H 1.08998 * 109.47077 * 300.00100 * 1 2 3 29 29 H 1.09005 * 109.47351 * 59.99909 * 1 2 3 30 30 H 1.09000 * 109.47821 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47253 * 59.99900 * 3 2 1 32 32 H 1.09005 * 109.46726 * 299.99926 * 3 2 1 33 33 H 1.09002 * 109.47309 * 304.99981 * 4 3 2 34 34 H 1.08999 * 109.47182 * 184.99797 * 4 3 2 35 35 H 1.09002 * 109.46655 * 35.98955 * 6 5 4 36 36 H 1.09002 * 109.47162 * 155.98429 * 6 5 4 37 37 H 0.97009 * 119.99721 * 179.97438 * 10 9 7 38 38 H 1.08006 * 119.93387 * 359.97438 * 18 17 15 39 39 H 1.07999 * 119.94540 * 179.74453 * 21 19 18 40 40 H 1.08996 * 109.46866 * 60.00660 * 26 25 23 41 41 H 1.09005 * 109.46331 * 180.02562 * 26 25 23 42 42 H 1.08999 * 109.47010 * 299.99815 * 26 25 23 43 43 H 1.08004 * 120.11963 * 0.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.2157 -0.8804 -1.3078 7 6 5.6074 -1.1792 -0.8128 8 1 6.2497 -0.3737 -0.4887 9 6 6.0607 -2.4807 -0.7737 10 7 7.2754 -2.7413 -0.3422 11 14 4.9499 -3.8738 -1.3350 12 1 5.1482 -4.1105 -2.7875 13 1 5.2857 -5.1087 -0.5819 14 1 3.5328 -3.5096 -1.0818 15 6 4.1626 1.3214 -2.3499 16 8 4.0558 2.5302 -2.2801 17 6 4.4967 0.6821 -3.6408 18 6 5.5100 -0.2772 -3.7049 19 6 5.8233 -0.8763 -4.9111 20 9 6.8039 -1.8039 -4.9672 21 6 5.1358 -0.5304 -6.0602 22 6 4.1206 0.4278 -6.0079 23 6 3.3872 0.7969 -7.2362 24 8 2.5049 1.6306 -7.1894 25 8 3.6970 0.2091 -8.4081 26 6 2.9348 0.6204 -9.5735 27 6 3.8012 1.0351 -4.7947 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8901 33 1 3.8508 0.5684 0.8427 34 1 3.9784 2.1764 0.0902 35 1 3.4884 -1.3941 -0.6790 36 1 4.1142 -1.2253 -2.3368 37 1 7.5941 -3.6571 -0.3144 38 1 6.0499 -0.5515 -2.8105 39 1 5.3874 -0.9984 -7.0005 40 1 3.0701 1.6895 -9.7374 41 1 3.2839 0.0713 -10.4481 42 1 1.8782 0.4086 -9.4099 43 1 3.0170 1.7763 -4.7495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931896602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:26 Heat of formation + Delta-G solvation = -171.228922 kcal Electronic energy + Delta-G solvation = -30235.764970 eV Core-core repulsion = 25775.677085 eV Total energy + Delta-G solvation = -4460.087885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.58517 -40.68977 -39.83968 -38.08303 -37.34937 -36.50064 -35.25657 -32.77567 -31.95892 -30.54571 -29.86236 -27.91814 -27.78852 -26.15823 -24.38094 -23.97196 -22.61629 -22.01484 -21.14028 -19.34698 -17.71206 -17.42641 -17.20220 -16.70427 -16.49541 -16.19857 -16.03692 -16.00856 -15.72604 -15.45030 -15.25583 -15.20585 -14.63390 -14.24545 -14.04504 -13.71584 -13.53612 -13.25294 -12.98038 -12.66069 -12.42069 -12.23793 -12.11449 -11.96267 -11.86006 -11.81500 -11.62214 -11.35205 -11.07268 -10.98405 -10.89079 -10.67612 -10.63060 -10.30614 -9.72985 -9.59175 -9.38865 -8.96690 -8.76336 -8.67540 -7.90448 -6.31579 -4.34697 0.59361 1.05815 2.37678 2.47630 3.10036 3.16339 3.25211 3.28602 3.54698 3.78145 4.01918 4.21994 4.24351 4.64687 4.80516 4.90176 4.97739 4.98318 5.04893 5.13066 5.26529 5.29012 5.33657 5.37672 5.51370 5.53319 5.59050 5.63302 5.72355 5.84407 5.99185 6.06698 6.17092 6.19817 6.25985 6.38299 6.50697 6.75167 6.93225 7.16792 7.33324 7.37667 7.59124 7.94647 8.29047 8.61830 8.74712 9.27155 10.79396 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008908 B = 0.004864 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.320476 B = 5754.950729 C = 7579.676522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.572 5.572 6 C 0.201 3.799 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.086 3.914 10 N -0.880 5.880 11 Si 0.859 3.141 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.258 1.258 15 C 0.561 3.439 16 O -0.557 6.557 17 C -0.104 4.104 18 C -0.074 4.074 19 C 0.080 3.920 20 F -0.128 7.128 21 C -0.086 4.086 22 C -0.122 4.122 23 C 0.517 3.483 24 O -0.503 6.503 25 O -0.354 6.354 26 C 0.037 3.963 27 C -0.021 4.021 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.269 0.731 38 H 0.194 0.806 39 H 0.149 0.851 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 3.666 -10.042 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.032 4.032 4 C 0.000 4.000 5 N -0.300 5.300 6 C 0.080 3.920 7 C -0.591 4.591 8 H 0.101 0.899 9 C -0.120 4.120 10 N -0.516 5.516 11 Si 0.684 3.316 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.183 1.183 15 C 0.349 3.651 16 O -0.437 6.437 17 C -0.107 4.107 18 C -0.093 4.093 19 C 0.061 3.939 20 F -0.106 7.106 21 C -0.105 4.105 22 C -0.123 4.123 23 C 0.362 3.638 24 O -0.392 6.392 25 O -0.271 6.271 26 C -0.057 4.057 27 C -0.040 4.040 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.211 0.789 39 H 0.167 0.833 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.360 4.157 -9.953 14.282 hybrid contribution -0.613 -0.885 -0.422 1.156 sum -9.973 3.272 -10.375 14.758 Atomic orbital electron populations 1.22691 0.81961 1.02377 0.99441 1.88002 1.18862 1.27733 1.95280 1.23058 0.95078 0.84850 1.00209 1.21419 0.90983 1.00073 0.87547 1.47756 1.63370 1.10199 1.08665 1.20096 0.98042 0.75795 0.98024 1.21348 0.97647 0.94511 1.45564 0.89913 1.24826 0.94757 0.98409 0.94002 1.69877 1.16403 1.20707 1.44590 0.87073 0.82215 0.82475 0.79804 1.19392 1.20618 1.18259 1.18012 0.77212 0.86238 0.83659 1.90725 1.53642 1.13590 1.85772 1.19664 0.98300 0.98521 0.94248 1.22985 0.95465 0.90938 0.99882 1.17422 0.90339 0.92131 0.94038 1.91559 1.59215 1.62855 1.97008 1.21493 0.94187 0.96279 0.98568 1.18549 1.00273 1.02364 0.91132 1.21002 0.80899 0.78363 0.83527 1.90843 1.30429 1.31496 1.86401 1.86550 1.60126 1.63105 1.17325 1.23289 0.96189 1.01359 0.84829 1.21199 0.97474 0.96154 0.89166 0.94478 0.94500 0.89952 0.92722 0.93153 0.88554 0.88971 0.93363 0.95101 0.92063 0.78920 0.83277 0.91740 0.87944 0.91772 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.21 9.99 -35.23 -0.35 -6.56 16 3 C 0.05 0.69 6.25 37.16 0.23 0.92 16 4 C 0.12 2.12 5.80 -4.04 -0.02 2.10 16 5 N -0.57 -11.39 2.42 -176.16 -0.43 -11.82 16 6 C 0.20 4.37 3.64 -5.19 -0.02 4.35 16 7 C -0.55 -13.74 7.42 -34.44 -0.26 -13.99 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.09 2.22 5.47 -17.82 -0.10 2.12 16 10 N -0.88 -24.48 13.96 55.43 0.77 -23.71 16 11 Si 0.86 19.53 27.47 -169.99 -4.67 14.86 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 15 C 0.56 11.29 7.20 -12.32 -0.09 11.20 16 16 O -0.56 -11.95 16.65 5.32 0.09 -11.86 16 17 C -0.10 -1.93 4.95 -105.03 -0.52 -2.45 16 18 C -0.07 -1.41 7.48 -39.03 -0.29 -1.71 16 19 C 0.08 1.38 7.28 -39.54 -0.29 1.09 16 20 F -0.13 -2.34 17.26 2.25 0.04 -2.30 16 21 C -0.09 -1.25 9.59 -39.01 -0.37 -1.63 16 22 C -0.12 -1.84 5.87 -105.05 -0.62 -2.46 16 23 C 0.52 7.43 7.90 34.62 0.27 7.71 16 24 O -0.50 -8.19 16.13 -19.25 -0.31 -8.50 16 25 O -0.35 -4.24 9.81 -40.53 -0.40 -4.64 16 26 C 0.04 0.31 10.56 101.05 1.07 1.38 16 27 C -0.02 -0.35 9.25 -38.77 -0.36 -0.70 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.68 8.03 -51.93 -0.42 1.26 16 34 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 35 H 0.05 1.08 6.58 -51.93 -0.34 0.74 16 36 H 0.03 0.67 4.80 -51.93 -0.25 0.42 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.19 4.20 4.75 -52.48 -0.25 3.95 16 39 H 0.15 1.79 7.60 -52.49 -0.40 1.39 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.15 2.39 7.64 -52.48 -0.40 1.99 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -30.27 372.52 -5.31 -35.57 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.42 Total: 3.91 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.25 Total: 9.43 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.35 Total: -35.52 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.97 Total: -31.56 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.27 -5.31 -35.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931896602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.656 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds