Wall clock time and date at job start Sat Apr 11 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00393 * 2 1 4 4 C 1.52997 * 109.47533 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46908 * 64.99805 * 4 3 2 6 6 C 1.46502 * 120.00232 * 264.80823 * 5 4 3 7 7 C 1.50701 * 109.47577 * 275.99041 * 6 5 4 8 8 H 1.07999 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00091 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99912 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00098 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47489 * 89.99709 * 11 9 7 13 13 H 1.48499 * 109.47118 * 210.00031 * 11 9 7 14 14 H 1.48498 * 109.46985 * 329.99461 * 11 9 7 15 15 C 1.34774 * 120.00135 * 84.81333 * 5 4 3 16 16 O 1.21548 * 120.00045 * 5.16395 * 15 5 4 17 17 C 1.47872 * 120.00273 * 185.16040 * 15 5 4 18 18 C 1.39685 * 120.05702 * 311.73340 * 17 15 5 19 19 C 1.38281 * 120.12950 * 179.97438 * 18 17 15 20 20 F 1.35097 * 119.87575 * 180.02562 * 19 18 17 21 21 C 1.38302 * 120.24868 * 359.97438 * 19 18 17 22 22 C 1.39695 * 120.11308 * 0.02562 * 21 19 18 23 23 C 1.47744 * 120.06473 * 179.97438 * 22 21 19 24 24 O 1.21474 * 120.00098 * 180.02562 * 23 22 21 25 25 O 1.34713 * 120.00320 * 0.02562 * 23 22 21 26 26 C 1.45204 * 116.99818 * 179.97438 * 25 23 22 27 27 C 1.39280 * 120.05899 * 131.70811 * 17 15 5 28 28 H 1.08998 * 109.47077 * 300.00100 * 1 2 3 29 29 H 1.09005 * 109.47351 * 59.99909 * 1 2 3 30 30 H 1.09000 * 109.47821 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47253 * 59.99900 * 3 2 1 32 32 H 1.09005 * 109.46726 * 299.99926 * 3 2 1 33 33 H 1.09002 * 109.47309 * 304.99981 * 4 3 2 34 34 H 1.08999 * 109.47182 * 184.99797 * 4 3 2 35 35 H 1.09002 * 109.46655 * 35.98955 * 6 5 4 36 36 H 1.09002 * 109.47162 * 155.98429 * 6 5 4 37 37 H 0.97009 * 119.99721 * 179.97438 * 10 9 7 38 38 H 1.08006 * 119.93387 * 359.97438 * 18 17 15 39 39 H 1.07999 * 119.94540 * 179.74453 * 21 19 18 40 40 H 1.08996 * 109.46866 * 60.00660 * 26 25 23 41 41 H 1.09005 * 109.46331 * 180.02562 * 26 25 23 42 42 H 1.08999 * 109.47010 * 299.99815 * 26 25 23 43 43 H 1.08004 * 120.11963 * 0.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.2157 -0.8804 -1.3078 7 6 5.6074 -1.1792 -0.8128 8 1 6.2497 -0.3737 -0.4887 9 6 6.0607 -2.4807 -0.7737 10 7 7.2754 -2.7413 -0.3422 11 14 4.9499 -3.8738 -1.3350 12 1 5.1482 -4.1105 -2.7875 13 1 5.2857 -5.1087 -0.5819 14 1 3.5328 -3.5096 -1.0818 15 6 4.1626 1.3214 -2.3499 16 8 4.0558 2.5302 -2.2801 17 6 4.4967 0.6821 -3.6408 18 6 5.5100 -0.2772 -3.7049 19 6 5.8233 -0.8763 -4.9111 20 9 6.8039 -1.8039 -4.9672 21 6 5.1358 -0.5304 -6.0602 22 6 4.1206 0.4278 -6.0079 23 6 3.3872 0.7969 -7.2362 24 8 2.5049 1.6306 -7.1894 25 8 3.6970 0.2091 -8.4081 26 6 2.9348 0.6204 -9.5735 27 6 3.8012 1.0351 -4.7947 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8901 33 1 3.8508 0.5684 0.8427 34 1 3.9784 2.1764 0.0902 35 1 3.4884 -1.3941 -0.6790 36 1 4.1142 -1.2253 -2.3368 37 1 7.5941 -3.6571 -0.3144 38 1 6.0499 -0.5515 -2.8105 39 1 5.3874 -0.9984 -7.0005 40 1 3.0701 1.6895 -9.7374 41 1 3.2839 0.0713 -10.4481 42 1 1.8782 0.4086 -9.4099 43 1 3.0170 1.7763 -4.7495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931896602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:25 Heat of formation + Delta-G solvation = -189.327121 kcal Electronic energy + Delta-G solvation = -30236.549766 eV Core-core repulsion = 25775.677085 eV Total energy + Delta-G solvation = -4460.872682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.99461 -41.89667 -41.23900 -39.36918 -38.61587 -37.56907 -36.89484 -34.66094 -33.34765 -31.89394 -31.30399 -29.49962 -28.72214 -27.22667 -25.70276 -25.23319 -24.40705 -23.37174 -22.36258 -20.70631 -19.14575 -19.08227 -18.64301 -18.05802 -17.55933 -17.48912 -17.35615 -17.25969 -16.99197 -16.85883 -16.64554 -16.60137 -16.10043 -15.80867 -15.39802 -14.93060 -14.71657 -14.47364 -14.42443 -14.32175 -13.91408 -13.51441 -13.37997 -13.22325 -13.17477 -13.00461 -12.87658 -12.79269 -12.67579 -12.51105 -12.11524 -11.95846 -11.86714 -11.84995 -11.70383 -11.07771 -10.82118 -10.59799 -10.30350 -10.04497 -9.54382 -8.33559 -6.39471 -0.70470 -0.29423 1.11352 1.35727 1.39281 1.44219 1.48000 1.64861 2.08428 2.31398 2.40444 2.89457 2.94024 3.00082 3.27680 3.58661 3.77391 3.84728 3.93579 4.11160 4.17609 4.27113 4.34080 4.36740 4.38216 4.50486 4.53248 4.55174 4.61607 4.69786 4.72530 4.78738 4.83842 4.86362 4.89283 4.98147 5.05402 5.18663 5.39559 5.50082 5.59586 6.10279 6.25421 6.48878 6.52373 6.65667 7.03731 7.26063 8.81079 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008908 B = 0.004864 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.320476 B = 5754.950729 C = 7579.676522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.115 3.885 5 N -0.576 5.576 6 C 0.217 3.783 7 C -0.540 4.540 8 H 0.043 0.957 9 C 0.039 3.961 10 N -0.927 5.927 11 Si 0.913 3.087 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.243 1.243 15 C 0.558 3.442 16 O -0.575 6.575 17 C -0.117 4.117 18 C -0.090 4.090 19 C 0.073 3.927 20 F -0.136 7.136 21 C -0.057 4.057 22 C -0.114 4.114 23 C 0.525 3.475 24 O -0.524 6.524 25 O -0.351 6.351 26 C 0.028 3.972 27 C -0.016 4.016 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.039 0.961 37 H 0.270 0.730 38 H 0.162 0.838 39 H 0.184 0.816 40 H 0.066 0.934 41 H 0.138 0.862 42 H 0.066 0.934 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 3.162 -12.381 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.022 4.022 4 C -0.007 4.007 5 N -0.304 5.304 6 C 0.095 3.905 7 C -0.578 4.578 8 H 0.062 0.938 9 C -0.162 4.162 10 N -0.565 5.565 11 Si 0.736 3.264 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.167 1.167 15 C 0.346 3.654 16 O -0.457 6.457 17 C -0.120 4.120 18 C -0.108 4.108 19 C 0.053 3.947 20 F -0.114 7.114 21 C -0.076 4.076 22 C -0.115 4.115 23 C 0.370 3.630 24 O -0.414 6.414 25 O -0.267 6.267 26 C -0.065 4.065 27 C -0.035 4.035 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.179 0.821 39 H 0.202 0.798 40 H 0.085 0.915 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.462 3.660 -12.298 17.206 hybrid contribution 0.042 -0.634 0.218 0.672 sum -11.421 3.026 -12.080 16.897 Atomic orbital electron populations 1.22893 0.79821 1.03510 1.00717 1.87943 1.21266 1.28251 1.95536 1.22934 0.93038 0.84875 1.01357 1.21603 0.93110 0.99776 0.86239 1.47808 1.63353 1.09574 1.09672 1.19796 0.95711 0.77015 0.97983 1.21376 0.98595 0.93417 1.44443 0.93832 1.25508 0.95801 1.00750 0.94150 1.70003 1.18408 1.21251 1.46867 0.86208 0.81156 0.79428 0.79648 1.18558 1.20579 1.16658 1.18282 0.76724 0.86096 0.84250 1.90698 1.54612 1.14206 1.86183 1.19516 0.99107 0.99159 0.94206 1.22594 0.96157 0.92354 0.99743 1.17467 0.90706 0.92212 0.94274 1.91541 1.59668 1.63164 1.97033 1.21711 0.92316 0.94831 0.98722 1.18645 1.00008 1.01678 0.91202 1.20734 0.80259 0.78024 0.83977 1.90845 1.31313 1.32477 1.86800 1.86533 1.60382 1.62483 1.17270 1.23681 0.96279 1.02246 0.84252 1.21208 0.97097 0.96051 0.89141 0.92443 0.93933 0.88981 0.89619 0.93757 0.89285 0.88712 0.93525 0.94357 0.92044 0.82064 0.79829 0.91536 0.84428 0.91542 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.89 9.99 -148.98 -1.49 -14.38 16 3 C 0.06 1.61 6.25 71.98 0.45 2.06 16 4 C 0.12 4.02 5.80 86.38 0.50 4.53 16 5 N -0.58 -23.42 2.42 -829.53 -2.00 -25.42 16 6 C 0.22 9.52 3.64 85.63 0.31 9.84 16 7 C -0.54 -27.87 7.42 25.60 0.19 -27.68 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 9 C 0.04 2.08 5.47 84.65 0.46 2.54 16 10 N -0.93 -53.39 13.96 21.44 0.30 -53.09 16 11 Si 0.91 40.13 27.47 68.60 1.88 42.01 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 14 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 15 C 0.56 22.85 7.20 86.79 0.63 23.48 16 16 O -0.57 -25.04 16.65 -3.87 -0.06 -25.10 16 17 C -0.12 -4.35 4.95 -20.13 -0.10 -4.45 16 18 C -0.09 -3.45 7.48 22.63 0.17 -3.28 16 19 C 0.07 2.43 7.28 22.30 0.16 2.59 16 20 F -0.14 -4.84 17.26 44.97 0.78 -4.07 16 21 C -0.06 -1.50 9.59 22.64 0.22 -1.29 16 22 C -0.11 -3.18 5.87 -20.14 -0.12 -3.30 16 23 C 0.52 13.60 7.90 70.34 0.56 14.16 16 24 O -0.52 -15.90 16.13 19.92 0.32 -15.58 16 25 O -0.35 -7.08 9.81 -56.23 -0.55 -7.63 16 26 C 0.03 0.37 10.56 113.37 1.20 1.57 16 27 C -0.02 -0.51 9.25 22.79 0.21 -0.30 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.09 3.19 8.03 -2.39 -0.02 3.17 16 34 H 0.09 3.21 7.51 -2.39 -0.02 3.19 16 35 H 0.05 2.08 6.58 -2.39 -0.02 2.07 16 36 H 0.04 1.66 4.80 -2.39 -0.01 1.64 16 37 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 38 H 0.16 7.36 4.75 -2.91 -0.01 7.35 16 39 H 0.18 3.59 7.60 -2.91 -0.02 3.57 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.15 4.71 7.64 -2.91 -0.02 4.69 16 Total: -1.00 -66.94 372.52 6.25 -60.69 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.99 Total: 20.26 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 6.08 Total: 22.31 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.71 Total: -78.52 kcal Atomic # 8 Polarization: -60.91 SS G_CDS: -1.78 Total: -62.69 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.07 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.01 kcal Total: -66.94 6.25 -60.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931896602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.637 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds