Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42101 * 110.54465 * 2 1 4 4 O 1.42104 * 110.54287 * 223.24784 * 2 1 3 5 5 C 1.76199 * 104.45038 * 111.62370 * 2 1 3 6 6 C 1.38258 * 120.00342 * 248.63583 * 5 2 1 7 7 C 1.38206 * 120.00027 * 179.72106 * 6 5 2 8 8 C 1.38256 * 120.00339 * 0.27645 * 7 6 5 9 9 C 1.38209 * 119.99883 * 359.97438 * 8 7 6 10 10 C 1.38224 * 120.00052 * 68.82682 * 5 2 1 11 11 C 1.50698 * 119.99564 * 0.04367 * 10 5 2 12 12 N 1.46502 * 109.47320 * 81.79762 * 11 10 5 13 13 C 1.34779 * 119.99990 * 184.50685 * 12 11 10 14 14 O 1.21281 * 119.99543 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99981 * 180.02562 * 13 12 11 16 16 C 1.52991 * 109.47114 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.47172 * 180.02562 * 16 15 13 18 18 C 1.52991 * 109.47172 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47114 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00238 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00350 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99887 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47294 * 89.99701 * 23 21 19 25 25 H 1.48505 * 109.47128 * 209.99688 * 23 21 19 26 26 H 1.48500 * 109.46848 * 329.99518 * 23 21 19 27 27 H 1.08994 * 109.47500 * 301.90116 * 1 2 3 28 28 H 1.09002 * 109.47060 * 61.91055 * 1 2 3 29 29 H 1.09006 * 109.47227 * 181.90545 * 1 2 3 30 30 H 1.07997 * 119.99365 * 0.02562 * 6 5 2 31 31 H 1.08010 * 119.99959 * 180.25592 * 7 6 5 32 32 H 1.07997 * 120.00002 * 179.97438 * 8 7 6 33 33 H 1.07999 * 120.00115 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.46567 * 201.79783 * 11 10 5 35 35 H 1.09001 * 109.47567 * 321.79072 * 11 10 5 36 36 H 0.96998 * 119.99849 * 4.51782 * 12 11 10 37 37 H 1.09007 * 109.46981 * 300.00801 * 15 13 12 38 38 H 1.09000 * 109.47055 * 60.00046 * 15 13 12 39 39 H 1.09004 * 109.47417 * 299.99447 * 16 15 13 40 40 H 1.09000 * 109.47597 * 59.99796 * 16 15 13 41 41 H 1.09004 * 109.46287 * 299.99880 * 17 16 15 42 42 H 1.08994 * 109.46847 * 59.99427 * 17 16 15 43 43 H 1.09007 * 109.47376 * 299.99719 * 18 17 16 44 44 H 1.09000 * 109.47597 * 59.99537 * 18 17 16 45 45 H 0.97001 * 120.00196 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.8485 0.2012 2.5183 7 6 3.1881 -0.2906 3.7644 8 6 2.9382 -1.6139 4.0770 9 6 2.3483 -2.4450 3.1435 10 6 2.0074 -1.9528 1.8973 11 6 1.3638 -2.8588 0.8795 12 7 2.3821 -3.3445 -0.0552 13 6 2.0218 -4.1013 -1.1107 14 8 0.8547 -4.3798 -1.2869 15 6 3.0693 -4.6014 -2.0717 16 6 2.3997 -5.4290 -3.1705 17 6 3.4633 -5.9373 -4.1460 18 6 2.7936 -6.7644 -5.2452 19 6 3.8411 -7.2644 -6.2063 20 1 4.8805 -7.0167 -6.0491 21 6 3.4726 -8.0382 -7.2863 22 7 4.3868 -8.4751 -8.1248 23 14 1.6748 -8.4661 -7.5586 24 1 1.0405 -7.4237 -8.4050 25 1 1.5768 -9.7828 -8.2384 26 1 0.9778 -8.5321 -6.2490 27 1 -0.3634 0.5430 0.8724 28 1 -0.3633 0.4839 -0.9066 29 1 -0.3634 -1.0271 0.0342 30 1 3.0433 1.2350 2.2742 31 1 3.6491 0.3589 4.4940 32 1 3.2040 -1.9983 5.0507 33 1 2.1534 -3.4788 3.3875 34 1 0.9030 -3.7061 1.3872 35 1 0.6015 -2.3055 0.3310 36 1 3.3155 -3.1215 0.0857 37 1 3.5858 -3.7526 -2.5202 38 1 3.7876 -5.2218 -1.5358 39 1 1.8831 -6.2778 -2.7224 40 1 1.6816 -4.8083 -3.7064 41 1 3.9803 -5.0887 -4.5942 42 1 4.1810 -6.5581 -3.6098 43 1 2.2763 -7.6129 -4.7973 44 1 2.0761 -6.1432 -5.7813 45 1 4.1275 -9.0192 -8.8848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129758712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = -86.364818 kcal Electronic energy + Delta-G solvation = -26745.084099 eV Core-core repulsion = 22854.889373 eV Total energy + Delta-G solvation = -3890.194725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.34416 -39.26982 -37.54267 -36.30049 -35.34647 -34.75031 -32.55294 -32.04437 -31.83702 -30.03167 -30.01651 -27.08641 -25.31912 -23.81785 -22.46334 -21.77504 -20.17036 -19.91738 -19.47910 -18.21960 -17.03979 -16.88540 -16.62411 -16.50456 -16.17215 -15.89837 -15.64867 -15.31600 -14.97505 -14.37695 -14.14184 -13.91176 -13.83420 -13.69588 -13.56416 -13.20350 -13.02450 -12.70427 -12.57633 -12.41414 -12.26577 -12.10210 -11.98970 -11.80876 -11.66114 -11.45337 -11.04890 -11.01219 -10.63696 -10.43099 -10.03649 -9.90784 -9.77327 -9.57998 -9.54693 -9.25948 -9.08264 -9.04590 -8.43775 -5.95033 -3.91929 -0.40807 0.19905 0.60602 2.39553 2.77119 2.85524 3.27190 3.39614 3.46064 3.46734 3.52729 3.73958 3.89706 4.09043 4.28039 4.33516 4.44372 4.55170 4.59473 4.68853 4.88668 4.93863 5.07923 5.16268 5.25729 5.37167 5.39394 5.41743 5.48529 5.51057 5.67557 5.73541 5.96303 6.17455 6.18841 6.28314 6.32240 6.53635 6.80150 6.93406 7.08747 7.46689 7.53204 7.59358 7.91094 8.35893 8.64839 9.10599 9.68562 11.18541 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002134 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.420663 B =13117.546069 C =13537.349359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.492 3.508 3 O -0.941 6.941 4 O -0.913 6.913 5 C -0.646 4.646 6 C -0.023 4.023 7 C -0.134 4.134 8 C -0.066 4.066 9 C -0.120 4.120 10 C -0.013 4.013 11 C 0.135 3.865 12 N -0.712 5.712 13 C 0.526 3.474 14 O -0.547 6.547 15 C -0.138 4.138 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.016 4.016 19 C -0.517 4.517 20 H 0.071 0.929 21 C 0.063 3.937 22 N -0.907 5.907 23 Si 0.880 3.120 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.264 1.264 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.405 0.595 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.015 0.985 44 H 0.011 0.989 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 20.882 30.443 37.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.670 3.330 3 O -0.938 6.938 4 O -0.910 6.910 5 C -0.732 4.732 6 C -0.042 4.042 7 C -0.153 4.153 8 C -0.084 4.084 9 C -0.139 4.139 10 C -0.015 4.015 11 C 0.011 3.989 12 N -0.365 5.365 13 C 0.314 3.686 14 O -0.424 6.424 15 C -0.178 4.178 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.053 4.053 19 C -0.555 4.555 20 H 0.089 0.911 21 C -0.137 4.137 22 N -0.547 5.547 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.189 1.189 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.240 0.760 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.742 20.811 29.506 36.731 hybrid contribution -0.887 -0.349 0.702 1.184 sum -7.630 20.463 30.208 37.275 Atomic orbital electron populations 1.30377 1.25697 1.12432 1.12169 1.05545 0.78104 0.74776 0.74561 1.93571 1.77481 1.36728 1.85998 1.93696 1.76690 1.60573 1.60023 1.30574 1.15764 1.02931 1.23924 1.21043 0.91620 0.99645 0.91871 1.21393 1.00768 0.96108 0.97028 1.21522 0.94082 0.93615 0.99222 1.21262 0.99167 1.00568 0.92943 1.19593 0.94926 0.91911 0.95041 1.20491 0.91549 0.97455 0.89403 1.45765 1.10316 1.53710 1.26702 1.20932 0.90476 0.76713 0.80492 1.90666 1.19892 1.58069 1.73757 1.21745 0.97529 1.01777 0.96716 1.21472 0.98695 0.98928 0.95220 1.21477 0.96911 0.99405 0.96261 1.19580 0.96575 0.95011 0.94142 1.21203 0.94959 1.31266 1.08093 0.91107 1.25051 0.97336 0.95552 0.95780 1.69926 1.33193 1.36619 1.14918 0.86766 0.86051 0.77671 0.78750 1.20345 1.21538 1.18891 0.84954 0.84560 0.84540 0.83521 0.84806 0.84901 0.84634 0.89410 0.91014 0.76043 0.88496 0.89246 0.91957 0.91794 0.92820 0.92909 0.96665 0.97058 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.06 10.49 101.05 1.06 -2.00 16 2 S 2.49 19.14 5.17 -107.50 -0.56 18.58 16 3 O -0.94 -9.65 16.75 -57.54 -0.96 -10.62 16 4 O -0.91 -10.02 14.64 -57.54 -0.84 -10.87 16 5 C -0.65 -4.47 5.60 -39.58 -0.22 -4.69 16 6 C -0.02 -0.14 9.50 -39.59 -0.38 -0.52 16 7 C -0.13 -0.65 10.05 -39.59 -0.40 -1.05 16 8 C -0.07 -0.30 10.05 -39.59 -0.40 -0.70 16 9 C -0.12 -0.66 9.67 -39.59 -0.38 -1.04 16 10 C -0.01 -0.09 5.23 -104.62 -0.55 -0.64 16 11 C 0.13 1.13 4.84 -5.19 -0.03 1.11 16 12 N -0.71 -7.51 3.55 -61.47 -0.22 -7.73 16 13 C 0.53 7.46 7.81 -10.99 -0.09 7.38 16 14 O -0.55 -9.60 15.98 5.56 0.09 -9.51 16 15 C -0.14 -1.94 5.70 -27.89 -0.16 -2.09 16 16 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 17 C -0.10 -2.12 5.15 -26.73 -0.14 -2.26 16 18 C -0.02 -0.40 4.04 -27.89 -0.11 -0.51 16 19 C -0.52 -15.37 9.66 -34.44 -0.33 -15.70 16 20 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 21 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.91 -28.85 13.96 55.43 0.77 -28.08 16 23 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 27 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.14 0.62 5.73 -51.92 -0.30 0.32 16 30 H 0.15 0.80 7.22 -52.49 -0.38 0.42 16 31 H 0.13 0.35 8.06 -52.48 -0.42 -0.08 16 32 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 33 H 0.14 0.54 8.05 -52.49 -0.42 0.12 16 34 H 0.09 0.68 8.02 -51.93 -0.42 0.26 16 35 H 0.07 0.57 4.32 -51.93 -0.22 0.35 16 36 H 0.40 3.62 8.40 -40.82 -0.34 3.27 16 37 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.38 7.20 -51.92 -0.37 0.01 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -39.52 380.02 -9.65 -49.18 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.66 Total: -1.87 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.33 Total: -22.87 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.56 Total: -35.81 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.72 Total: -30.99 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Atomic # 16 Polarization: 19.14 SS G_CDS: -0.56 Total: 18.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.52 -9.65 -49.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129758712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.189 kcal (2) G-P(sol) polarization free energy of solvation -39.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds