Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42101 * 110.54465 * 2 1 4 4 O 1.42104 * 110.54287 * 223.24784 * 2 1 3 5 5 C 1.76199 * 104.45038 * 111.62370 * 2 1 3 6 6 C 1.38258 * 120.00342 * 248.63583 * 5 2 1 7 7 C 1.38206 * 120.00027 * 179.72106 * 6 5 2 8 8 C 1.38256 * 120.00339 * 0.27645 * 7 6 5 9 9 C 1.38209 * 119.99883 * 359.97438 * 8 7 6 10 10 C 1.38224 * 120.00052 * 68.82682 * 5 2 1 11 11 C 1.50698 * 119.99564 * 0.04367 * 10 5 2 12 12 N 1.46502 * 109.47320 * 81.79762 * 11 10 5 13 13 C 1.34779 * 119.99990 * 184.50685 * 12 11 10 14 14 O 1.21281 * 119.99543 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99981 * 180.02562 * 13 12 11 16 16 C 1.52991 * 109.47114 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.47172 * 180.02562 * 16 15 13 18 18 C 1.52991 * 109.47172 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47114 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00238 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00350 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99887 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47294 * 89.99701 * 23 21 19 25 25 H 1.48505 * 109.47128 * 209.99688 * 23 21 19 26 26 H 1.48500 * 109.46848 * 329.99518 * 23 21 19 27 27 H 1.08994 * 109.47500 * 301.90116 * 1 2 3 28 28 H 1.09002 * 109.47060 * 61.91055 * 1 2 3 29 29 H 1.09006 * 109.47227 * 181.90545 * 1 2 3 30 30 H 1.07997 * 119.99365 * 0.02562 * 6 5 2 31 31 H 1.08010 * 119.99959 * 180.25592 * 7 6 5 32 32 H 1.07997 * 120.00002 * 179.97438 * 8 7 6 33 33 H 1.07999 * 120.00115 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.46567 * 201.79783 * 11 10 5 35 35 H 1.09001 * 109.47567 * 321.79072 * 11 10 5 36 36 H 0.96998 * 119.99849 * 4.51782 * 12 11 10 37 37 H 1.09007 * 109.46981 * 300.00801 * 15 13 12 38 38 H 1.09000 * 109.47055 * 60.00046 * 15 13 12 39 39 H 1.09004 * 109.47417 * 299.99447 * 16 15 13 40 40 H 1.09000 * 109.47597 * 59.99796 * 16 15 13 41 41 H 1.09004 * 109.46287 * 299.99880 * 17 16 15 42 42 H 1.08994 * 109.46847 * 59.99427 * 17 16 15 43 43 H 1.09007 * 109.47376 * 299.99719 * 18 17 16 44 44 H 1.09000 * 109.47597 * 59.99537 * 18 17 16 45 45 H 0.97001 * 120.00196 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.8485 0.2012 2.5183 7 6 3.1881 -0.2906 3.7644 8 6 2.9382 -1.6139 4.0770 9 6 2.3483 -2.4450 3.1435 10 6 2.0074 -1.9528 1.8973 11 6 1.3638 -2.8588 0.8795 12 7 2.3821 -3.3445 -0.0552 13 6 2.0218 -4.1013 -1.1107 14 8 0.8547 -4.3798 -1.2869 15 6 3.0693 -4.6014 -2.0717 16 6 2.3997 -5.4290 -3.1705 17 6 3.4633 -5.9373 -4.1460 18 6 2.7936 -6.7644 -5.2452 19 6 3.8411 -7.2644 -6.2063 20 1 4.8805 -7.0167 -6.0491 21 6 3.4726 -8.0382 -7.2863 22 7 4.3868 -8.4751 -8.1248 23 14 1.6748 -8.4661 -7.5586 24 1 1.0405 -7.4237 -8.4050 25 1 1.5768 -9.7828 -8.2384 26 1 0.9778 -8.5321 -6.2490 27 1 -0.3634 0.5430 0.8724 28 1 -0.3633 0.4839 -0.9066 29 1 -0.3634 -1.0271 0.0342 30 1 3.0433 1.2350 2.2742 31 1 3.6491 0.3589 4.4940 32 1 3.2040 -1.9983 5.0507 33 1 2.1534 -3.4788 3.3875 34 1 0.9030 -3.7061 1.3872 35 1 0.6015 -2.3055 0.3310 36 1 3.3155 -3.1215 0.0857 37 1 3.5858 -3.7526 -2.5202 38 1 3.7876 -5.2218 -1.5358 39 1 1.8831 -6.2778 -2.7224 40 1 1.6816 -4.8083 -3.7064 41 1 3.9803 -5.0887 -4.5942 42 1 4.1810 -6.5581 -3.6098 43 1 2.2763 -7.6129 -4.7973 44 1 2.0761 -6.1432 -5.7813 45 1 4.1275 -9.0192 -8.8848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129758712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -114.543144 kcal Electronic energy + Delta-G solvation = -26746.306003 eV Core-core repulsion = 22854.889373 eV Total energy + Delta-G solvation = -3891.416629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02280 -40.09020 -38.23390 -36.98508 -36.71969 -35.87889 -34.57237 -32.82748 -32.28345 -31.64835 -30.43752 -28.23861 -26.64904 -24.25478 -23.74629 -22.65046 -21.72494 -21.21649 -20.04409 -18.84631 -18.78416 -17.87262 -17.48073 -17.19278 -17.00875 -16.78786 -16.47339 -16.26860 -15.96852 -15.52824 -15.41112 -14.93869 -14.59431 -14.55476 -14.22192 -14.10537 -13.93123 -13.71861 -13.63843 -13.45054 -13.40181 -13.20888 -13.09776 -12.93783 -12.80080 -12.29956 -12.26376 -12.03180 -12.02252 -11.73531 -11.54360 -11.48494 -11.32068 -11.24396 -10.84154 -10.74722 -10.37162 -10.00395 -9.93455 -8.28355 -6.31473 -0.93553 -0.25205 0.18884 1.36086 1.37282 1.50753 1.77911 1.87581 2.24541 2.37462 2.57071 2.90715 3.06782 3.21385 3.36258 3.62623 3.89085 3.97262 4.01041 4.04994 4.09776 4.19423 4.22327 4.30964 4.48035 4.51146 4.66430 4.69291 4.71620 4.81863 4.86689 4.91273 4.93707 5.10077 5.19415 5.22569 5.27684 5.29930 5.36669 5.47451 5.62831 5.68050 5.70173 5.82006 6.31173 6.61756 6.76257 7.33029 7.34778 8.88331 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002134 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.420663 B =13117.546069 C =13537.349359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.490 3.510 3 O -0.976 6.976 4 O -0.955 6.955 5 C -0.647 4.647 6 C -0.038 4.038 7 C -0.132 4.132 8 C -0.064 4.064 9 C -0.122 4.122 10 C -0.021 4.021 11 C 0.127 3.873 12 N -0.698 5.698 13 C 0.524 3.476 14 O -0.586 6.586 15 C -0.135 4.135 16 C -0.095 4.095 17 C -0.095 4.095 18 C -0.016 4.016 19 C -0.530 4.530 20 H 0.035 0.965 21 C 0.002 3.998 22 N -0.951 5.951 23 Si 0.950 3.050 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.250 1.250 27 H 0.160 0.840 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.013 0.987 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 21.397 33.183 40.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.674 3.326 3 O -0.973 6.973 4 O -0.952 6.952 5 C -0.735 4.735 6 C -0.057 4.057 7 C -0.151 4.151 8 C -0.082 4.082 9 C -0.141 4.141 10 C -0.023 4.023 11 C 0.004 3.996 12 N -0.349 5.349 13 C 0.312 3.688 14 O -0.467 6.467 15 C -0.175 4.175 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.053 4.053 19 C -0.568 4.568 20 H 0.053 0.947 21 C -0.195 4.195 22 N -0.592 5.592 23 Si 0.773 3.227 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.174 1.174 27 H 0.178 0.822 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.169 0.831 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.031 0.969 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.182 21.367 32.269 39.557 hybrid contribution -0.345 -0.453 -0.051 0.572 sum -8.527 20.914 32.217 39.345 Atomic orbital electron populations 1.30271 1.21780 1.13418 1.14206 1.05199 0.79430 0.73521 0.74438 1.93523 1.79140 1.38038 1.86595 1.93639 1.78555 1.61255 1.61742 1.30305 1.16703 1.03234 1.23283 1.21215 0.92086 0.99837 0.92587 1.21732 0.99889 0.96754 0.96756 1.21880 0.92943 0.93259 1.00126 1.21520 0.98603 1.01550 0.92439 1.19437 0.96033 0.91489 0.95324 1.20682 0.91267 0.98213 0.89457 1.45639 1.11333 1.52118 1.25849 1.20843 0.89718 0.77052 0.81164 1.90645 1.21189 1.59943 1.74945 1.21664 0.97751 1.01977 0.96058 1.21268 0.97542 0.99001 0.95504 1.21349 0.97482 0.98780 0.95637 1.19570 0.95587 0.95609 0.94577 1.21547 0.94553 1.31404 1.09345 0.94677 1.26028 1.02544 0.95449 0.95452 1.70068 1.35768 1.37644 1.15753 0.85659 0.79801 0.77836 0.79374 1.19260 1.20651 1.17415 0.82215 0.83410 0.84060 0.83465 0.82460 0.82127 0.83101 0.88529 0.90797 0.75128 0.87656 0.86804 0.92511 0.93021 0.92931 0.92460 0.96522 0.96905 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.01 10.49 113.37 1.19 -3.82 16 2 S 2.49 37.80 5.17 -56.49 -0.29 37.51 16 3 O -0.98 -20.43 16.75 -127.65 -2.14 -22.57 16 4 O -0.95 -21.24 14.64 -127.65 -1.87 -23.11 16 5 C -0.65 -8.28 5.60 22.27 0.12 -8.15 16 6 C -0.04 -0.43 9.50 22.27 0.21 -0.21 16 7 C -0.13 -0.93 10.05 22.27 0.22 -0.71 16 8 C -0.06 -0.37 10.05 22.27 0.22 -0.15 16 9 C -0.12 -1.01 9.67 22.27 0.22 -0.80 16 10 C -0.02 -0.25 5.23 -19.86 -0.10 -0.36 16 11 C 0.13 1.97 4.84 85.63 0.41 2.39 16 12 N -0.70 -13.98 3.55 -466.78 -1.66 -15.63 16 13 C 0.52 14.44 7.81 87.66 0.68 15.12 16 14 O -0.59 -20.34 15.98 -3.03 -0.05 -20.39 16 15 C -0.13 -3.63 5.70 29.84 0.17 -3.46 16 16 C -0.10 -3.31 4.50 30.59 0.14 -3.18 16 17 C -0.09 -3.88 5.15 30.59 0.16 -3.72 16 18 C -0.02 -0.81 4.04 29.84 0.12 -0.68 16 19 C -0.53 -32.10 9.66 25.60 0.25 -31.86 16 20 H 0.03 2.30 7.99 -2.91 -0.02 2.28 16 21 C 0.00 0.10 5.47 84.65 0.46 0.57 16 22 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 23 Si 0.95 46.73 27.47 68.60 1.88 48.61 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 27 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.14 1.06 5.73 -2.39 -0.01 1.05 16 30 H 0.15 1.54 7.22 -2.91 -0.02 1.52 16 31 H 0.16 0.31 8.06 -2.91 -0.02 0.28 16 32 H 0.16 0.03 8.06 -2.91 -0.02 0.01 16 33 H 0.15 0.74 8.05 -2.91 -0.02 0.72 16 34 H 0.10 1.33 8.02 -2.39 -0.02 1.32 16 35 H 0.07 1.11 4.32 -2.39 -0.01 1.10 16 36 H 0.41 6.91 8.40 -92.71 -0.78 6.13 16 37 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 38 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.06 2.03 8.10 -2.38 -0.02 2.01 16 40 H 0.05 1.91 8.10 -2.39 -0.02 1.90 16 41 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 43 H 0.02 0.82 7.20 -2.38 -0.02 0.81 16 44 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 45 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -86.75 380.02 0.82 -85.93 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.17 Total: 10.01 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.48 Total: -39.03 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.36 Total: -76.97 kcal Atomic # 8 Polarization: -62.01 SS G_CDS: -4.06 Total: -66.07 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.88 Total: 48.61 kcal Atomic # 16 Polarization: 37.80 SS G_CDS: -0.29 Total: 37.51 kcal Total: -86.75 0.82 -85.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129758712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.613 kcal (2) G-P(sol) polarization free energy of solvation -86.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds