Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 110.54542 * 2 1 4 4 O 1.42102 * 110.54291 * 223.24377 * 2 1 3 5 5 C 1.76208 * 104.44971 * 111.62194 * 2 1 3 6 6 C 1.38236 * 119.99728 * 89.99725 * 5 2 1 7 7 C 1.38240 * 120.00058 * 179.97438 * 6 5 2 8 8 C 1.38232 * 119.99631 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99860 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46912 * 90.00280 * 9 8 7 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.42907 * 113.99838 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.63767 * 330.70335 * 12 11 10 14 14 C 1.55153 * 110.71923 * 207.55707 * 12 11 10 15 15 C 1.54906 * 101.58145 * 206.13092 * 14 12 11 16 16 N 1.47426 * 104.83099 * 37.01354 * 15 14 12 17 17 C 1.36932 * 125.65263 * 155.90032 * 16 15 14 18 18 H 1.07999 * 120.00710 * 179.97438 * 17 16 15 19 19 C 1.38820 * 120.00102 * 359.97438 * 17 16 15 20 20 N 1.31619 * 119.99605 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00279 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46916 * 60.00289 * 21 19 17 23 23 H 1.48506 * 109.47161 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47310 * 300.00197 * 21 19 17 25 25 C 1.47326 * 108.73530 * 335.71367 * 16 15 14 26 26 C 1.38234 * 120.00312 * 0.27932 * 8 7 6 27 27 C 1.38233 * 120.00113 * 270.02457 * 5 2 1 28 28 H 1.09003 * 109.46959 * 308.37730 * 1 2 3 29 29 H 1.09003 * 109.46878 * 68.37219 * 1 2 3 30 30 H 1.08998 * 109.47334 * 188.37680 * 1 2 3 31 31 H 1.08002 * 120.00221 * 0.02562 * 6 5 2 32 32 H 1.07996 * 119.99763 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47152 * 330.00052 * 9 8 7 34 34 H 1.09001 * 109.46980 * 210.00152 * 9 8 7 35 35 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 36 36 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 37 37 H 1.08997 * 111.00581 * 324.21373 * 14 12 11 38 38 H 1.09004 * 111.00320 * 88.02346 * 14 12 11 39 39 H 1.09001 * 110.36622 * 155.84593 * 15 14 12 40 40 H 1.08993 * 110.37234 * 278.06245 * 15 14 12 41 41 H 0.96994 * 120.00403 * 179.97438 * 20 19 17 42 42 H 1.08995 * 110.06065 * 241.87468 * 25 16 15 43 43 H 1.08999 * 109.85142 * 120.61066 * 25 16 15 44 44 H 1.07998 * 120.00015 * 179.72855 * 26 8 7 45 45 H 1.07996 * 119.99910 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2537 -0.6288 1.5863 6 6 2.4261 -1.9883 1.7673 7 6 2.7716 -2.4816 3.0116 8 6 2.9451 -1.6152 4.0747 9 6 3.3223 -2.1529 5.4311 10 6 4.8465 -2.2024 5.5542 11 8 5.2042 -2.7128 6.8402 12 6 6.6136 -2.8009 7.0591 13 1 7.1390 -2.9652 6.1183 14 6 6.9419 -3.9265 8.0752 15 6 8.2847 -3.4297 8.6665 16 7 8.1417 -1.9647 8.7490 17 6 8.8313 -1.1420 9.5992 18 1 8.6541 -0.0768 9.5821 19 6 9.7583 -1.6772 10.4831 20 7 9.9740 -2.9754 10.5043 21 14 10.6996 -0.5550 11.6423 22 1 9.7423 0.1658 12.5194 23 1 11.6209 -1.3667 12.4777 24 1 11.4835 0.4279 10.8520 25 6 7.1373 -1.5310 7.7624 26 6 2.7676 -0.2562 3.8949 27 6 2.4257 0.2375 2.6497 28 1 -0.3633 0.6380 0.8057 29 1 -0.3633 0.3788 -0.9554 30 1 -0.3634 -1.0167 0.1497 31 1 2.2917 -2.6651 0.9364 32 1 2.9066 -3.5437 3.1529 33 1 2.9153 -3.1571 5.5499 34 1 2.9162 -1.5023 6.2056 35 1 5.2527 -2.8530 4.7797 36 1 5.2535 -1.1983 5.4354 37 1 6.1753 -3.9917 8.8472 38 1 7.0674 -4.8843 7.5702 39 1 8.4415 -3.8519 9.6591 40 1 9.1110 -3.6953 8.0073 41 1 10.6220 -3.3495 11.1216 42 1 7.5947 -0.8644 7.0314 43 1 6.3167 -1.0224 8.2685 44 1 2.8989 0.4202 4.7265 45 1 2.2901 1.2995 2.5085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224317169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -61.716629 kcal Electronic energy + Delta-G solvation = -26073.833382 eV Core-core repulsion = 22184.707482 eV Total energy + Delta-G solvation = -3889.125900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.87237 -38.39053 -37.51226 -36.35727 -36.08957 -33.83650 -32.12624 -31.45029 -30.10534 -29.48090 -28.78570 -26.98537 -24.55852 -23.82463 -23.28635 -21.59480 -20.19721 -20.13543 -19.47420 -18.22163 -17.01061 -16.70463 -16.63647 -16.55202 -15.76237 -15.56052 -14.96852 -14.82865 -14.75865 -14.40380 -14.09137 -13.88304 -13.83837 -13.72619 -13.37852 -13.09264 -12.54177 -12.48718 -12.39006 -12.36059 -12.31479 -11.82828 -11.67076 -11.59265 -11.51441 -11.26901 -11.01201 -10.99731 -10.84423 -10.75022 -10.31733 -10.14225 -9.78329 -9.58404 -9.47405 -9.43444 -9.14551 -8.65660 -6.84910 -5.65647 -3.07656 -0.39648 0.40513 0.91663 2.42668 2.98394 3.40984 3.44686 3.46271 3.50680 3.66305 3.79707 4.24731 4.26255 4.46247 4.48414 4.50865 4.60234 4.85473 4.93261 5.08906 5.09542 5.09593 5.26540 5.38094 5.41084 5.43130 5.49626 5.52750 5.67212 5.70667 5.73145 5.75282 5.85101 5.86965 6.16174 6.32631 6.44827 6.52054 6.57189 6.62948 6.70677 7.47876 7.58684 7.61258 7.84150 8.34829 9.21122 9.81595 10.46157 11.38429 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.001756 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.446552 B =15939.962230 C =16485.415212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.501 3.499 3 O -0.938 6.938 4 O -0.938 6.938 5 C -0.667 4.667 6 C -0.023 4.023 7 C -0.136 4.136 8 C -0.020 4.020 9 C -0.089 4.089 10 C 0.068 3.932 11 O -0.378 6.378 12 C 0.077 3.923 13 H 0.062 0.938 14 C -0.138 4.138 15 C 0.152 3.848 16 N -0.602 5.602 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.924 5.924 21 Si 0.917 3.083 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.117 3.883 26 C -0.135 4.135 27 C -0.022 4.022 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.013 0.987 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.034 0.966 44 H 0.136 0.864 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.754 1.928 -20.203 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.681 3.319 3 O -0.935 6.935 4 O -0.936 6.936 5 C -0.754 4.754 6 C -0.042 4.042 7 C -0.155 4.155 8 C -0.021 4.021 9 C -0.127 4.127 10 C -0.009 4.009 11 O -0.297 6.297 12 C 0.019 3.981 13 H 0.081 0.919 14 C -0.176 4.176 15 C 0.027 3.973 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.747 3.253 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C -0.009 4.009 26 C -0.153 4.153 27 C -0.041 4.041 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.154 0.846 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.165 2.116 -20.540 30.293 hybrid contribution 0.274 0.406 1.040 1.149 sum -21.891 2.522 -19.501 29.425 Atomic orbital electron populations 1.30230 1.25820 1.12096 1.11859 1.05112 0.77800 0.74641 0.74375 1.93594 1.77253 1.36553 1.86102 1.93591 1.77280 1.61654 1.61047 1.30471 1.19931 1.03067 1.21905 1.20934 0.92455 0.93153 0.97652 1.21259 1.01319 1.00432 0.92445 1.20184 0.92831 0.93706 0.95339 1.20649 0.95912 1.03039 0.93053 1.22341 0.93657 0.98513 0.86418 1.87897 1.23947 1.85056 1.32787 1.23262 0.79574 0.97376 0.97905 0.91947 1.23154 1.01058 0.95801 0.97625 1.21959 0.89538 0.83730 1.02029 1.44455 1.44898 1.03294 1.40295 1.19045 1.15116 0.89757 1.11143 0.90508 1.24805 0.99726 0.96223 1.00011 1.69763 1.37759 1.09585 1.40123 0.86116 0.79422 0.79257 0.80482 1.21130 1.21527 1.21213 1.21749 0.92733 0.94366 0.92098 1.21293 1.01062 0.95142 0.97842 1.20948 0.92319 0.99424 0.91411 0.84944 0.85032 0.84964 0.84070 0.84754 0.89513 0.89384 0.93409 0.93149 0.91118 0.92012 0.87123 0.96865 0.93622 0.96196 0.94824 0.84637 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.51 10.80 101.05 1.09 -0.42 16 2 S 2.50 16.64 5.80 -107.50 -0.62 16.02 16 3 O -0.94 -9.44 17.13 -57.54 -0.99 -10.42 16 4 O -0.94 -9.31 17.13 -57.54 -0.99 -10.29 16 5 C -0.67 -5.22 5.66 -39.58 -0.22 -5.44 16 6 C -0.02 -0.18 9.47 -39.58 -0.37 -0.56 16 7 C -0.14 -1.13 9.70 -39.58 -0.38 -1.51 16 8 C -0.02 -0.18 5.13 -104.62 -0.54 -0.72 16 9 C -0.09 -0.88 5.72 -27.88 -0.16 -1.03 16 10 C 0.07 0.86 5.78 37.16 0.21 1.07 16 11 O -0.38 -6.24 10.07 -35.23 -0.35 -6.60 16 12 C 0.08 1.42 3.41 -24.90 -0.08 1.34 16 13 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 14 C -0.14 -2.73 6.81 -24.59 -0.17 -2.90 16 15 C 0.15 3.77 5.89 -2.53 -0.01 3.75 16 16 N -0.60 -15.93 3.40 -169.83 -0.58 -16.51 16 17 C -0.22 -6.33 10.28 -15.06 -0.15 -6.48 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16 21 Si 0.92 22.26 29.55 -169.99 -5.02 17.23 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.12 2.57 7.04 -2.90 -0.02 2.55 16 26 C -0.13 -1.17 9.70 -39.58 -0.38 -1.55 16 27 C -0.02 -0.18 9.47 -39.58 -0.37 -0.56 16 28 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 29 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 30 H 0.13 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.14 0.85 7.57 -52.49 -0.40 0.45 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.11 3.05 5.87 -51.93 -0.30 2.74 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 44 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.14 0.91 7.57 -52.49 -0.40 0.51 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -36.72 383.42 -10.84 -47.56 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -6.96 Total: -3.32 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.67 Total: -12.90 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.02 Total: -43.06 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -2.33 Total: -27.31 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 16.64 SS G_CDS: -0.62 Total: 16.02 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.72 -10.84 -47.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224317169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.152 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds