Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 110.54542 * 2 1 4 4 O 1.42102 * 110.54291 * 223.24377 * 2 1 3 5 5 C 1.76208 * 104.44971 * 111.62194 * 2 1 3 6 6 C 1.38236 * 119.99728 * 89.99725 * 5 2 1 7 7 C 1.38240 * 120.00058 * 179.97438 * 6 5 2 8 8 C 1.38232 * 119.99631 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99860 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46912 * 90.00280 * 9 8 7 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.42907 * 113.99838 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.63767 * 330.70335 * 12 11 10 14 14 C 1.55153 * 110.71923 * 207.55707 * 12 11 10 15 15 C 1.54906 * 101.58145 * 206.13092 * 14 12 11 16 16 N 1.47426 * 104.83099 * 37.01354 * 15 14 12 17 17 C 1.36932 * 125.65263 * 155.90032 * 16 15 14 18 18 H 1.07999 * 120.00710 * 179.97438 * 17 16 15 19 19 C 1.38820 * 120.00102 * 359.97438 * 17 16 15 20 20 N 1.31619 * 119.99605 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00279 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46916 * 60.00289 * 21 19 17 23 23 H 1.48506 * 109.47161 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47310 * 300.00197 * 21 19 17 25 25 C 1.47326 * 108.73530 * 335.71367 * 16 15 14 26 26 C 1.38234 * 120.00312 * 0.27932 * 8 7 6 27 27 C 1.38233 * 120.00113 * 270.02457 * 5 2 1 28 28 H 1.09003 * 109.46959 * 308.37730 * 1 2 3 29 29 H 1.09003 * 109.46878 * 68.37219 * 1 2 3 30 30 H 1.08998 * 109.47334 * 188.37680 * 1 2 3 31 31 H 1.08002 * 120.00221 * 0.02562 * 6 5 2 32 32 H 1.07996 * 119.99763 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47152 * 330.00052 * 9 8 7 34 34 H 1.09001 * 109.46980 * 210.00152 * 9 8 7 35 35 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 36 36 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 37 37 H 1.08997 * 111.00581 * 324.21373 * 14 12 11 38 38 H 1.09004 * 111.00320 * 88.02346 * 14 12 11 39 39 H 1.09001 * 110.36622 * 155.84593 * 15 14 12 40 40 H 1.08993 * 110.37234 * 278.06245 * 15 14 12 41 41 H 0.96994 * 120.00403 * 179.97438 * 20 19 17 42 42 H 1.08995 * 110.06065 * 241.87468 * 25 16 15 43 43 H 1.08999 * 109.85142 * 120.61066 * 25 16 15 44 44 H 1.07998 * 120.00015 * 179.72855 * 26 8 7 45 45 H 1.07996 * 119.99910 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2537 -0.6288 1.5863 6 6 2.4261 -1.9883 1.7673 7 6 2.7716 -2.4816 3.0116 8 6 2.9451 -1.6152 4.0747 9 6 3.3223 -2.1529 5.4311 10 6 4.8465 -2.2024 5.5542 11 8 5.2042 -2.7128 6.8402 12 6 6.6136 -2.8009 7.0591 13 1 7.1390 -2.9652 6.1183 14 6 6.9419 -3.9265 8.0752 15 6 8.2847 -3.4297 8.6665 16 7 8.1417 -1.9647 8.7490 17 6 8.8313 -1.1420 9.5992 18 1 8.6541 -0.0768 9.5821 19 6 9.7583 -1.6772 10.4831 20 7 9.9740 -2.9754 10.5043 21 14 10.6996 -0.5550 11.6423 22 1 9.7423 0.1658 12.5194 23 1 11.6209 -1.3667 12.4777 24 1 11.4835 0.4279 10.8520 25 6 7.1373 -1.5310 7.7624 26 6 2.7676 -0.2562 3.8949 27 6 2.4257 0.2375 2.6497 28 1 -0.3633 0.6380 0.8057 29 1 -0.3633 0.3788 -0.9554 30 1 -0.3634 -1.0167 0.1497 31 1 2.2917 -2.6651 0.9364 32 1 2.9066 -3.5437 3.1529 33 1 2.9153 -3.1571 5.5499 34 1 2.9162 -1.5023 6.2056 35 1 5.2527 -2.8530 4.7797 36 1 5.2535 -1.1983 5.4354 37 1 6.1753 -3.9917 8.8472 38 1 7.0674 -4.8843 7.5702 39 1 8.4415 -3.8519 9.6591 40 1 9.1110 -3.6953 8.0073 41 1 10.6220 -3.3495 11.1216 42 1 7.5947 -0.8644 7.0314 43 1 6.3167 -1.0224 8.2685 44 1 2.8989 0.4202 4.7265 45 1 2.2901 1.2995 2.5085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224317169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -37.144522 kcal Electronic energy + Delta-G solvation = -26072.767855 eV Core-core repulsion = 22184.707482 eV Total energy + Delta-G solvation = -3888.060373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55356 -39.22497 -38.40855 -36.84072 -35.43524 -34.31649 -33.94679 -32.91735 -30.59327 -30.25906 -29.03517 -28.39599 -27.95283 -24.30978 -23.71276 -22.66378 -22.37239 -21.13356 -20.90051 -19.22929 -18.30134 -17.82275 -17.43143 -16.89020 -16.72120 -16.41962 -16.23442 -15.56413 -15.26076 -15.11400 -14.84659 -14.82002 -14.63141 -14.35425 -14.20991 -14.03738 -13.99873 -13.59458 -13.29951 -13.23548 -13.06971 -12.88126 -12.75924 -12.62588 -12.31152 -12.01291 -11.89513 -11.86974 -11.75989 -11.50686 -11.25328 -10.99914 -10.96615 -10.77731 -10.68858 -10.48902 -9.91573 -9.15735 -8.86910 -8.47332 -4.10328 -1.64553 0.40083 0.75083 1.07772 1.31120 1.62991 1.64463 1.90506 2.08702 2.51941 2.61379 2.97746 3.05973 3.60965 3.69716 3.79391 3.89162 4.00104 4.05038 4.32535 4.34929 4.38865 4.40040 4.51821 4.57349 4.67765 4.68665 4.81979 4.88821 4.89245 4.91431 4.92318 4.97925 4.99500 5.14091 5.19565 5.29222 5.37544 5.57319 5.60281 5.62825 5.90481 5.96842 6.23707 6.41791 6.55422 6.71412 6.81294 7.31201 7.62791 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.001756 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.446552 B =15939.962230 C =16485.415212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.713 4.713 2 S 1.951 4.049 3 O -1.129 7.129 4 O -1.132 7.132 5 C -0.642 4.642 6 C -0.167 4.167 7 C -0.105 4.105 8 C -0.259 4.259 9 C -0.023 4.023 10 C 0.081 3.919 11 O -0.378 6.378 12 C 0.051 3.949 13 H 0.092 0.908 14 C -0.139 4.139 15 C 0.062 3.938 16 N -0.401 5.401 17 C 0.354 3.646 18 H 0.271 0.729 19 C -0.073 4.073 20 N -0.547 5.547 21 Si 1.039 2.961 22 H -0.231 1.231 23 H -0.262 1.262 24 H -0.231 1.231 25 C 0.025 3.975 26 C -0.098 4.098 27 C -0.166 4.166 28 H 0.036 0.964 29 H 0.011 0.989 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.157 0.843 40 H 0.139 0.861 41 H 0.377 0.623 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.111 0.889 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 47.140 -10.772 64.520 80.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.147 3.853 3 O -1.127 7.127 4 O -1.129 7.129 5 C -0.745 4.745 6 C -0.196 4.196 7 C -0.127 4.127 8 C -0.275 4.275 9 C -0.060 4.060 10 C 0.004 3.996 11 O -0.297 6.297 12 C -0.008 4.008 13 H 0.110 0.890 14 C -0.177 4.177 15 C -0.058 4.058 16 N -0.068 5.068 17 C 0.174 3.826 18 H 0.287 0.713 19 C -0.308 4.308 20 N -0.174 5.174 21 Si 0.851 3.149 22 H -0.154 1.154 23 H -0.185 1.185 24 H -0.154 1.154 25 C -0.095 4.095 26 C -0.120 4.120 27 C -0.195 4.195 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.174 0.826 40 H 0.157 0.843 41 H 0.197 0.803 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.129 0.871 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 46.842 -10.777 63.028 79.265 hybrid contribution -0.691 -0.132 -0.827 1.086 sum 46.151 -10.908 62.201 78.217 Atomic orbital electron populations 1.30583 1.55701 0.98689 0.97378 1.49786 0.83713 0.71702 0.80119 1.92432 1.84782 1.46547 1.88893 1.92440 1.84799 1.63789 1.71848 1.30069 1.09269 1.02025 1.33106 1.19783 1.10370 0.94086 0.95377 1.20634 1.02513 0.96955 0.92586 1.18520 1.21138 0.92319 0.95507 1.19769 0.93754 0.99945 0.92554 1.22625 0.96124 0.97831 0.82978 1.87961 1.21564 1.85264 1.34871 1.23421 0.83513 0.94081 0.99779 0.88995 1.23178 0.96497 0.99191 0.98789 1.24193 0.99171 0.74659 1.07750 1.49852 1.23396 1.12402 1.21188 1.26518 0.79001 1.00351 0.76743 0.71317 1.28572 0.99972 0.99942 1.02335 1.69897 1.13229 1.13025 1.21229 0.84083 0.78144 0.76802 0.75862 1.15395 1.18516 1.15402 1.24157 0.92873 1.00070 0.92412 1.20633 1.02124 0.95428 0.93858 1.19811 1.10177 0.94892 0.94584 0.94520 0.96994 0.94769 0.93836 0.88235 0.92600 0.91356 0.94102 0.92254 0.88774 0.87312 0.82617 0.84318 0.80302 0.83497 0.84041 0.87071 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.71 -61.53 10.80 113.37 1.22 -60.31 16 2 S 1.95 180.92 5.80 -56.49 -0.33 180.60 16 3 O -1.13 -109.65 17.13 -127.65 -2.19 -111.84 16 4 O -1.13 -110.80 17.13 -127.65 -2.19 -112.98 16 5 C -0.64 -54.49 5.66 22.27 0.13 -54.36 16 6 C -0.17 -13.12 9.47 22.27 0.21 -12.91 16 7 C -0.10 -6.57 9.70 22.27 0.22 -6.35 16 8 C -0.26 -14.03 5.13 -19.87 -0.10 -14.13 16 9 C -0.02 -0.81 5.72 29.85 0.17 -0.64 16 10 C 0.08 1.96 5.78 71.98 0.42 2.37 16 11 O -0.38 -4.74 10.07 -148.98 -1.50 -6.24 16 12 C 0.05 -0.06 3.41 31.78 0.11 0.04 16 13 H 0.09 0.00 7.85 -2.39 -0.02 -0.02 16 14 C -0.14 1.05 6.81 31.98 0.22 1.27 16 15 C 0.06 -1.03 5.89 86.85 0.51 -0.52 16 16 N -0.40 8.07 3.40 -691.24 -2.35 5.71 16 17 C 0.35 -9.80 10.28 84.04 0.86 -8.94 16 18 H 0.27 -10.26 7.83 -2.91 -0.02 -10.29 16 19 C -0.07 1.86 5.49 84.86 0.47 2.32 16 20 N -0.55 11.81 10.09 21.65 0.22 12.03 16 21 Si 1.04 -23.15 29.55 68.60 2.03 -21.12 16 22 H -0.23 4.62 7.11 99.48 0.71 5.33 16 23 H -0.26 4.47 7.11 99.48 0.71 5.17 16 24 H -0.23 4.59 7.11 99.48 0.71 5.30 16 25 C 0.03 -0.31 7.04 86.67 0.61 0.30 16 26 C -0.10 -5.94 9.70 22.27 0.22 -5.72 16 27 C -0.17 -12.73 9.47 22.27 0.21 -12.52 16 28 H 0.04 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.01 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.03 2.80 8.14 -2.39 -0.02 2.79 16 31 H 0.04 3.56 7.57 -2.91 -0.02 3.53 16 32 H 0.10 5.36 8.06 -2.91 -0.02 5.33 16 33 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 34 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 35 H 0.04 1.11 8.11 -2.39 -0.02 1.09 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.11 -0.67 8.14 -2.38 -0.02 -0.69 16 39 H 0.16 -2.91 5.87 -2.39 -0.01 -2.92 16 40 H 0.14 -2.53 8.14 -2.39 -0.02 -2.55 16 41 H 0.38 -8.57 8.31 -92.71 -0.77 -9.34 16 42 H 0.15 -2.19 8.14 -2.39 -0.02 -2.21 16 43 H 0.14 -1.78 8.06 -2.39 -0.02 -1.80 16 44 H 0.11 5.49 8.06 -2.91 -0.02 5.47 16 45 H 0.05 3.88 7.57 -2.91 -0.02 3.86 16 Total: -1.00 -207.33 383.42 0.13 -207.20 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.97 Total: 16.73 kcal Atomic # 6 Polarization: -175.56 SS G_CDS: 5.47 Total: -170.09 kcal Atomic # 7 Polarization: 19.88 SS G_CDS: -2.13 Total: 17.74 kcal Atomic # 8 Polarization: -225.19 SS G_CDS: -5.87 Total: -231.06 kcal Atomic # 14 Polarization: -23.15 SS G_CDS: 2.03 Total: -21.12 kcal Atomic # 16 Polarization: 180.92 SS G_CDS: -0.33 Total: 180.60 kcal Total: -207.33 0.13 -207.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224317169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.059 kcal (2) G-P(sol) polarization free energy of solvation -207.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -207.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds