Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57405 * 2 1 4 4 O 1.42098 * 108.57788 * 228.97472 * 2 1 3 5 5 C 1.81397 * 101.92084 * 114.48756 * 2 1 3 6 6 C 1.52996 * 109.46858 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.47186 * 180.02562 * 6 5 2 8 8 C 1.53000 * 109.47004 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46980 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00328 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47295 * 299.99387 * 12 10 9 14 14 C 1.50696 * 109.47530 * 59.99483 * 12 10 9 15 15 H 1.07997 * 120.00260 * 235.33651 * 14 12 10 16 16 C 1.37879 * 119.99977 * 55.33425 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.97120 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96775 * 16 14 12 19 19 H 1.48495 * 109.47133 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46977 * 120.00228 * 18 16 14 21 21 H 1.48496 * 109.47065 * 239.99944 * 18 16 14 22 22 C 1.50707 * 109.46942 * 179.97438 * 12 10 9 23 23 C 1.38224 * 120.00104 * 47.22099 * 22 12 10 24 24 C 1.38237 * 120.00255 * 180.02562 * 23 22 12 25 25 C 1.38238 * 119.99745 * 359.95072 * 24 23 22 26 26 C 1.38236 * 119.99912 * 0.02562 * 25 24 23 27 27 C 1.38232 * 119.99717 * 227.19961 * 22 12 10 28 28 H 1.09002 * 109.47313 * 305.51161 * 1 2 3 29 29 H 1.09006 * 109.47337 * 65.51546 * 1 2 3 30 30 H 1.08994 * 109.47070 * 185.51635 * 1 2 3 31 31 H 1.08997 * 109.47445 * 59.99929 * 5 2 1 32 32 H 1.09001 * 109.46912 * 299.99627 * 5 2 1 33 33 H 1.09003 * 109.47944 * 59.99640 * 6 5 2 34 34 H 1.09001 * 109.47183 * 299.99385 * 6 5 2 35 35 H 1.08997 * 109.47288 * 59.99345 * 7 6 5 36 36 H 1.09001 * 109.46741 * 299.99245 * 7 6 5 37 37 H 1.09000 * 109.47119 * 60.00172 * 8 7 6 38 38 H 1.09001 * 109.47533 * 299.99479 * 8 7 6 39 39 H 0.97004 * 120.00070 * 359.97438 * 9 8 7 40 40 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 41 41 H 1.08000 * 120.00315 * 359.97438 * 23 22 12 42 42 H 1.07994 * 120.00683 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00281 * 179.72897 * 25 24 23 44 44 H 1.07996 * 120.00326 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00068 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7984 7 6 4.0216 -1.4395 3.1604 8 6 5.5383 -1.5227 3.3433 9 7 5.8410 -2.1169 4.6478 10 6 7.1222 -2.2898 5.0286 11 8 8.0246 -1.9539 4.2911 12 6 7.4335 -2.9015 6.3702 13 1 7.0054 -2.2835 7.1595 14 6 6.8429 -4.2861 6.4403 15 1 6.1695 -4.5459 7.2437 16 6 7.1621 -5.2213 5.4788 17 7 8.0122 -4.9172 4.5224 18 14 6.3874 -6.9201 5.5345 19 1 5.4721 -7.0087 6.7004 20 1 5.6206 -7.1557 4.2847 21 1 7.4532 -7.9462 5.6622 22 6 8.9276 -2.9834 6.5504 23 6 9.7194 -1.8872 6.2643 24 6 11.0898 -1.9625 6.4290 25 6 11.6683 -3.1339 6.8810 26 6 10.8763 -4.2300 7.1676 27 6 9.5059 -4.1548 7.0023 28 1 -0.3634 0.5969 0.8365 29 1 -0.3634 0.4259 -0.9353 30 1 -0.3633 -1.0228 0.0988 31 1 1.7611 -1.7369 1.6665 32 1 1.7611 -0.1170 2.4042 33 1 4.1329 0.1830 1.7472 34 1 4.1335 -1.4368 1.0094 35 1 3.5943 -2.4409 3.2111 36 1 3.5935 -0.8214 3.9497 37 1 5.9659 -0.5214 3.2925 38 1 5.9661 -2.1410 2.5541 39 1 5.1193 -2.3852 5.2378 40 1 8.2371 -5.5752 3.8461 41 1 9.2675 -0.9720 5.9111 42 1 11.7086 -1.1062 6.2051 43 1 12.7394 -3.1942 7.0056 44 1 11.3282 -5.1453 7.5203 45 1 8.8872 -5.0111 7.2266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276657972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -92.511217 kcal Electronic energy + Delta-G solvation = -26860.917729 eV Core-core repulsion = 22970.456475 eV Total energy + Delta-G solvation = -3890.461253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.94795 -37.52462 -37.24614 -36.33387 -35.87383 -33.59741 -33.14737 -30.81212 -30.10763 -29.64819 -29.08262 -27.11475 -24.28942 -23.30974 -21.43271 -21.21283 -20.44934 -19.13696 -19.09426 -17.00372 -16.67486 -16.62082 -16.34601 -15.81812 -15.59996 -15.15757 -14.97325 -14.80373 -14.13285 -13.85498 -13.72636 -13.60971 -13.57622 -13.14081 -12.84342 -12.59585 -12.40151 -12.35061 -12.26723 -12.22288 -12.12858 -11.90834 -11.51516 -11.36533 -11.26328 -11.21788 -11.00670 -10.78485 -10.68292 -10.60119 -10.42644 -10.03089 -9.65498 -9.35019 -8.71551 -8.28573 -7.97104 -7.66290 -7.37283 -6.13403 -4.30036 -0.34665 2.42575 2.57394 2.64130 3.17508 3.28227 3.29153 3.30957 3.67304 4.10268 4.21118 4.32098 4.33031 4.38588 4.45628 4.64092 4.96169 5.06112 5.10397 5.14397 5.21799 5.29726 5.46102 5.67708 5.71067 5.88257 5.92507 6.00184 6.08306 6.27360 6.35884 6.43838 6.61793 6.70498 6.83428 6.92857 7.16017 7.24195 7.53853 7.59009 7.66902 7.69218 7.81366 8.18923 8.29518 8.62227 8.82402 9.36560 9.72430 10.86924 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.002476 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.647371 B =11307.937400 C =12514.480676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.419 3.581 3 O -0.940 6.940 4 O -0.939 6.939 5 C -0.606 4.606 6 C -0.110 4.110 7 C -0.121 4.121 8 C 0.124 3.876 9 N -0.738 5.738 10 C 0.549 3.451 11 O -0.547 6.547 12 C 0.056 3.944 13 H 0.056 0.944 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.074 3.926 17 N -0.840 5.840 18 Si 0.886 3.114 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.015 4.015 23 C -0.100 4.100 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.065 4.065 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.395 0.605 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.033 7.443 -2.590 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.602 3.398 3 O -0.937 6.937 4 O -0.936 6.936 5 C -0.736 4.736 6 C -0.149 4.149 7 C -0.160 4.160 8 C -0.001 4.001 9 N -0.391 5.391 10 C 0.338 3.662 11 O -0.423 6.423 12 C 0.035 3.965 13 H 0.074 0.926 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.134 4.134 17 N -0.473 5.473 18 Si 0.713 3.287 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.016 4.016 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.083 4.083 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.228 0.772 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.692 7.925 -3.998 15.488 hybrid contribution -1.381 -1.627 0.502 2.192 sum -14.073 6.298 -3.497 15.809 Atomic orbital electron populations 1.30296 1.27309 1.11491 1.11659 1.07884 0.78102 0.75862 0.77969 1.93605 1.78888 1.34611 1.86640 1.93614 1.78831 1.66958 1.54209 1.30318 1.06678 1.13979 1.22588 1.21260 0.90011 1.03429 1.00199 1.21727 0.96741 1.01652 0.95878 1.21064 0.93194 0.98234 0.87617 1.45781 1.08830 1.66152 1.18358 1.21013 0.80886 0.74435 0.89841 1.90541 1.45577 1.50578 1.55651 1.17885 0.90692 0.97236 0.90700 0.92613 1.20723 1.30306 0.94618 1.12160 0.91519 1.25063 0.94434 0.98560 0.95355 1.70087 1.30023 1.34403 1.12789 0.86629 0.79452 0.84592 0.78041 1.19541 1.21009 1.20798 1.19821 0.95886 0.92125 0.93737 1.20971 0.93253 0.98944 0.98665 1.20822 0.95149 0.97424 1.02872 1.20771 0.98143 0.94268 1.03130 1.20988 0.94718 0.97541 1.03398 1.21137 0.93156 0.97911 0.96070 0.85408 0.85394 0.85385 0.84847 0.84900 0.89870 0.89801 0.90904 0.91145 0.92673 0.92250 0.77172 0.92556 0.87518 0.88113 0.88231 0.88077 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.31 10.62 101.05 1.07 -1.24 16 2 S 2.42 17.66 5.36 -107.50 -0.58 17.08 16 3 O -0.94 -10.60 18.10 -57.83 -1.05 -11.65 16 4 O -0.94 -10.98 18.10 -57.83 -1.05 -12.03 16 5 C -0.61 -3.71 5.81 37.16 0.22 -3.50 16 6 C -0.11 -1.09 5.22 -26.73 -0.14 -1.23 16 7 C -0.12 -1.38 5.33 -26.73 -0.14 -1.52 16 8 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 9 N -0.74 -14.07 5.45 -60.29 -0.33 -14.40 16 10 C 0.55 12.84 5.45 -10.99 -0.06 12.78 16 11 O -0.55 -14.58 13.95 5.55 0.08 -14.50 16 12 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.54 -12.95 7.12 -34.44 -0.25 -13.19 16 15 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.07 1.84 3.99 -17.82 -0.07 1.77 16 17 N -0.84 -22.83 10.88 55.43 0.60 -22.23 16 18 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.01 -0.35 4.52 -104.63 -0.47 -0.82 16 23 C -0.10 -2.29 8.21 -39.59 -0.33 -2.61 16 24 C -0.14 -3.00 10.05 -39.58 -0.40 -3.40 16 25 C -0.14 -2.90 10.05 -39.58 -0.40 -3.30 16 26 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 27 C -0.06 -1.52 8.20 -39.58 -0.32 -1.84 16 28 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 29 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.13 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.40 6.67 8.36 -40.82 -0.34 6.33 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.11 2.41 7.01 -52.49 -0.37 2.05 16 42 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.13 3.06 6.02 -52.49 -0.32 2.75 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -36.50 385.15 -10.41 -46.91 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.91 Total: 9.09 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -1.97 Total: -18.58 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.27 Total: -36.63 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -2.02 Total: -38.18 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 17.66 SS G_CDS: -0.58 Total: 17.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.50 -10.41 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276657972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.598 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds