Wall clock time and date at job start Sat Apr 11 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42102 * 108.57995 * 2 1 4 4 O 1.42105 * 108.57786 * 228.97694 * 2 1 3 5 5 C 1.81399 * 101.92150 * 114.48873 * 2 1 3 6 6 H 1.08994 * 109.46911 * 299.99626 * 5 2 1 7 7 C 1.53000 * 109.47007 * 60.00135 * 5 2 1 8 8 C 1.53004 * 109.46774 * 180.02562 * 7 5 2 9 9 C 1.53000 * 109.46818 * 299.99522 * 8 7 5 10 10 C 1.53000 * 109.47058 * 60.00652 * 9 8 7 11 11 C 1.52995 * 109.46871 * 299.99429 * 10 9 8 12 12 H 1.09004 * 109.47470 * 299.99859 * 11 10 9 13 13 N 1.46506 * 109.46934 * 179.97438 * 11 10 9 14 14 C 1.39781 * 119.99766 * 85.00532 * 13 11 10 15 15 C 1.38944 * 120.00662 * 180.02562 * 14 13 11 16 16 C 1.38011 * 119.99692 * 179.97438 * 15 14 13 17 17 C 1.38899 * 120.00337 * 359.97427 * 16 15 14 18 18 O 1.35798 * 119.99511 * 180.02562 * 17 16 15 19 19 C 1.34813 * 116.99884 * 5.54665 * 18 17 16 20 20 H 1.07999 * 120.00030 * 354.93687 * 19 18 17 21 21 C 1.38628 * 120.00233 * 174.67002 * 19 18 17 22 22 N 1.31577 * 119.99744 * 0.26748 * 21 19 18 23 23 Si 1.86799 * 120.00181 * 180.27343 * 21 19 18 24 24 H 1.48499 * 109.47155 * 59.99550 * 23 21 19 25 25 H 1.48491 * 109.47176 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46685 * 299.99826 * 23 21 19 27 27 C 1.38904 * 120.01479 * 0.29600 * 17 16 15 28 28 C 1.38011 * 120.00019 * 359.45462 * 27 17 16 29 29 H 1.08994 * 109.46962 * 305.51349 * 1 2 3 30 30 H 1.09004 * 109.47116 * 65.51290 * 1 2 3 31 31 H 1.09000 * 109.46948 * 185.51000 * 1 2 3 32 32 H 1.08999 * 109.47102 * 60.00371 * 7 5 2 33 33 H 1.08996 * 109.47074 * 299.99805 * 7 5 2 34 34 H 1.09007 * 109.46816 * 180.02562 * 8 7 5 35 35 H 1.08991 * 109.47356 * 59.99967 * 8 7 5 36 36 H 1.09002 * 109.47554 * 299.99844 * 9 8 7 37 37 H 1.09001 * 109.46581 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.46877 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47062 * 59.99940 * 10 9 8 40 40 H 0.96997 * 120.00325 * 264.99969 * 13 11 10 41 41 H 1.07999 * 120.00525 * 359.94875 * 15 14 13 42 42 H 1.08000 * 120.00332 * 179.97438 * 16 15 14 43 43 H 0.97000 * 119.99958 * 180.02562 * 22 21 19 44 44 H 1.07997 * 119.99492 * 179.72175 * 27 17 16 45 45 H 1.08003 * 120.00221 * 180.27331 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.7611 -0.1171 2.4042 7 6 1.5884 -2.1412 1.6870 8 6 1.9040 -2.7614 3.0497 9 6 3.4206 -2.8447 3.2331 10 6 4.0210 -1.4392 3.1613 11 6 3.7054 -0.8190 1.7987 12 1 4.1335 -1.4377 1.0099 13 7 4.2797 0.5271 1.7302 14 6 5.6137 0.6992 1.3496 15 6 6.1587 1.9756 1.2851 16 6 7.4760 2.1453 0.9098 17 6 8.2570 1.0400 0.5973 18 8 9.5532 1.2071 0.2286 19 6 10.0526 2.4575 0.2968 20 1 9.4065 3.2837 0.5542 21 6 11.3967 2.6820 0.0419 22 7 12.1838 1.6754 -0.2717 23 14 12.0902 4.4135 0.1439 24 1 11.8912 4.9464 1.5156 25 1 13.5413 4.3847 -0.1698 26 1 11.3893 5.2857 -0.8325 27 6 7.7109 -0.2358 0.6563 28 6 6.3951 -0.4063 1.0364 29 1 -0.3633 0.5969 0.8365 30 1 -0.3633 0.4260 -0.9353 31 1 -0.3633 -1.0229 0.0987 32 1 2.0162 -2.7597 0.8981 33 1 0.5079 -2.0818 1.5567 34 1 1.4766 -3.7630 3.1007 35 1 1.4760 -2.1428 3.8383 36 1 3.8487 -3.4635 2.4444 37 1 3.6454 -3.2870 4.2037 38 1 5.1015 -1.4986 3.2924 39 1 3.5930 -0.8206 3.9501 40 1 3.7343 1.2988 1.9488 41 1 5.5515 2.8351 1.5281 42 1 7.8996 3.1374 0.8592 43 1 13.1243 1.8324 -0.4497 44 1 8.3172 -1.0946 0.4088 45 1 5.9718 -1.3986 1.0866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323506521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:31 Heat of formation + Delta-G solvation = -72.015002 kcal Electronic energy + Delta-G solvation = -27742.657467 eV Core-core repulsion = 23853.084997 eV Total energy + Delta-G solvation = -3889.572471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.62853 -38.56554 -37.19332 -36.60328 -36.13365 -34.00986 -32.03407 -31.70675 -30.30870 -29.76927 -29.51314 -26.79026 -25.02633 -23.57642 -22.80824 -21.80283 -20.56646 -20.32042 -19.03994 -17.82865 -17.19682 -17.08624 -16.64394 -16.08558 -15.99430 -15.65641 -14.73297 -14.59954 -14.36330 -14.20338 -13.94387 -13.75801 -13.56213 -13.46486 -13.36959 -13.17298 -12.84880 -12.61324 -12.37333 -12.20549 -12.13541 -12.12395 -11.81091 -11.68160 -11.49840 -11.41222 -11.29702 -11.20970 -10.95377 -10.89494 -10.64504 -10.51959 -10.29383 -10.24877 -9.19427 -9.13539 -8.41607 -8.09202 -6.37947 -6.27145 -3.84159 -0.28870 2.28113 2.48081 2.63014 3.22970 3.24111 3.26470 3.40658 3.45962 3.79541 4.05670 4.10962 4.22461 4.40766 4.47161 4.61376 4.65971 4.74450 4.88349 4.92721 4.97423 5.08899 5.18530 5.25839 5.32773 5.40011 5.49218 5.54085 5.67008 5.71219 5.75909 5.81579 5.84850 6.02659 6.11175 6.28967 6.31025 6.58760 6.92703 6.96300 7.19698 7.37394 7.51005 7.68401 7.99816 8.17553 8.24710 9.18852 9.93732 10.91676 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.002712 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.659676 B =10320.472739 C =11081.198540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.666 4.666 2 S 2.421 3.579 3 O -0.922 6.922 4 O -0.931 6.931 5 C -0.579 4.579 6 H 0.138 0.862 7 C -0.107 4.107 8 C -0.111 4.111 9 C -0.123 4.123 10 C -0.127 4.127 11 C 0.180 3.820 12 H 0.091 0.909 13 N -0.762 5.762 14 C 0.123 3.877 15 C -0.132 4.132 16 C -0.191 4.191 17 C 0.116 3.884 18 O -0.188 6.188 19 C -0.386 4.386 20 H 0.088 0.912 21 C 0.036 3.964 22 N -0.870 5.870 23 Si 0.937 3.063 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.271 1.271 27 C -0.152 4.152 28 C -0.146 4.146 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.267 0.733 44 H 0.117 0.883 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.613 -7.529 7.078 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.602 3.398 3 O -0.919 6.919 4 O -0.928 6.928 5 C -0.689 4.689 6 H 0.156 0.844 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.161 4.161 10 C -0.167 4.167 11 C 0.072 3.928 12 H 0.109 0.891 13 N -0.399 5.399 14 C 0.026 3.974 15 C -0.154 4.154 16 C -0.211 4.211 17 C 0.064 3.936 18 O -0.093 6.093 19 C -0.463 4.463 20 H 0.105 0.895 21 C -0.167 4.167 22 N -0.506 5.506 23 Si 0.763 3.237 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.197 1.197 27 C -0.172 4.172 28 C -0.168 4.168 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.077 0.923 44 H 0.135 0.865 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.616 -7.563 6.227 27.426 hybrid contribution -0.604 1.069 0.847 1.492 sum -26.220 -6.494 7.075 27.924 Atomic orbital electron populations 1.30408 1.27997 1.11339 1.11652 1.08134 0.77818 0.76167 0.77724 1.93611 1.78277 1.33978 1.86060 1.93598 1.78645 1.67104 1.53485 1.30518 1.05675 1.09144 1.23543 0.84358 1.21442 1.00165 0.92057 1.00871 1.21471 0.96865 1.00768 0.95864 1.21568 0.94953 0.97202 1.02351 1.22002 1.02165 0.95671 0.96836 1.20347 0.86550 0.86580 0.99296 0.89120 1.44441 1.10456 1.05358 1.79671 1.17304 0.84046 0.93665 1.02414 1.20256 0.95324 0.94515 1.05301 1.20999 0.93882 0.99341 1.06896 1.19253 0.86288 0.93011 0.95090 1.83985 1.19770 1.31173 1.74362 1.21198 0.93424 0.82682 1.49025 0.89485 1.25208 0.95006 0.99426 0.97030 1.70040 1.05581 1.30656 1.44367 0.85840 0.78121 0.80836 0.78934 1.19712 1.20465 1.19661 1.20004 0.94934 0.95152 1.07071 1.20217 0.93794 0.96450 1.06333 0.85475 0.85342 0.85392 0.89391 0.90533 0.91260 0.91620 0.91421 0.91470 0.90344 0.91571 0.76684 0.87358 0.85456 0.92293 0.86485 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.12 10.17 101.05 1.03 -2.09 16 2 S 2.42 22.73 4.76 -107.50 -0.51 22.22 16 3 O -0.92 -12.27 16.46 -57.83 -0.95 -13.23 16 4 O -0.93 -12.48 17.91 -57.83 -1.04 -13.52 16 5 C -0.58 -4.20 2.14 -26.73 -0.06 -4.26 16 6 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 7 C -0.11 -0.58 4.95 -26.73 -0.13 -0.71 16 8 C -0.11 -0.60 5.92 -26.73 -0.16 -0.75 16 9 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 10 C -0.13 -1.21 5.44 -26.73 -0.15 -1.35 16 11 C 0.18 1.95 1.59 -67.93 -0.11 1.84 16 12 H 0.09 1.10 6.48 -51.93 -0.34 0.76 16 13 N -0.76 -10.52 4.25 -52.11 -0.22 -10.74 16 14 C 0.12 2.22 6.64 -83.71 -0.56 1.66 16 15 C -0.13 -2.60 9.89 -39.40 -0.39 -2.99 16 16 C -0.19 -4.38 9.16 -39.42 -0.36 -4.74 16 17 C 0.12 2.93 6.65 -39.09 -0.26 2.67 16 18 O -0.19 -5.59 9.76 -0.05 0.00 -5.59 16 19 C -0.39 -11.25 9.48 30.88 0.29 -10.96 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.03 5.49 -17.52 -0.10 0.94 16 22 N -0.87 -26.48 13.67 55.48 0.76 -25.72 16 23 Si 0.94 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 27 C -0.15 -3.36 9.98 -39.42 -0.39 -3.75 16 28 C -0.15 -2.74 8.84 -39.40 -0.35 -3.09 16 29 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.13 0.33 6.87 -51.92 -0.36 -0.03 16 32 H 0.09 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.08 0.19 6.56 -51.93 -0.34 -0.15 16 34 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.40 5.01 7.78 -40.82 -0.32 4.69 16 41 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.13 2.91 5.63 -52.49 -0.30 2.61 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 45 H 0.11 1.76 6.11 -52.48 -0.32 1.44 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -37.61 369.92 -9.68 -47.29 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.42 Total: 5.99 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -1.84 Total: -28.63 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.54 Total: -36.47 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.99 Total: -32.34 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 22.73 SS G_CDS: -0.51 Total: 22.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.61 -9.68 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323506521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.727 kcal (2) G-P(sol) polarization free energy of solvation -37.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds