Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99997 * 2 1 4 4 O 1.20831 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99841 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47118 * 180.02562 * 5 3 2 7 7 C 1.34777 * 120.00193 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99774 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00197 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47129 * 180.02562 * 9 7 6 11 11 C 1.34779 * 119.99738 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00349 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97533 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71691 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96849 * 179.97438 * 14 13 11 28 28 H 1.09005 * 109.47323 * 300.00540 * 1 2 3 29 29 H 1.09002 * 109.47061 * 59.99592 * 1 2 3 30 30 H 1.08991 * 109.47254 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47201 * 59.99792 * 5 3 2 32 32 H 1.09001 * 109.46910 * 299.99839 * 5 3 2 33 33 H 0.97007 * 120.00454 * 359.97438 * 6 5 3 34 34 H 1.08994 * 109.47542 * 59.99579 * 9 7 6 35 35 H 1.09001 * 109.47139 * 299.99913 * 9 7 6 36 36 H 0.96998 * 120.00159 * 359.97438 * 10 9 7 37 37 H 0.96998 * 119.99666 * 359.97438 * 13 11 10 38 38 H 1.08003 * 126.06887 * 0.02562 * 15 14 13 39 39 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 40 40 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 41 41 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 42 42 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 5.2921 2.9950 0.0011 8 8 6.1274 2.1156 0.0012 9 6 5.7194 4.4401 0.0011 10 7 7.1824 4.5167 0.0005 11 6 7.7943 5.7176 0.0009 12 8 7.1321 6.7374 0.0012 13 7 9.1403 5.7881 0.0009 14 6 9.7768 7.0373 0.0007 15 6 9.1388 8.2879 0.0000 16 6 10.0969 9.2424 0.0065 17 7 11.2967 8.6246 0.0015 18 6 12.6047 9.2845 0.0023 19 6 13.4197 8.7831 1.1666 20 1 13.0050 8.0462 1.8384 21 6 14.6947 9.2650 1.3740 22 7 15.2017 10.1584 0.5528 23 14 15.7052 8.6429 2.8167 24 1 17.0332 9.3075 2.8141 25 1 14.9990 8.9528 4.0858 26 1 15.8866 7.1739 2.6971 27 7 11.0728 7.2419 0.0012 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.3137 3.3831 0.0006 34 1 5.3297 4.9343 0.8909 35 1 5.3298 4.9341 -0.8890 36 1 7.7107 3.7032 0.0006 37 1 9.6685 4.9745 0.0010 38 1 8.0722 8.4576 -0.0001 39 1 9.9312 10.3097 0.0117 40 1 12.4678 10.3622 0.0921 41 1 13.1251 9.0607 -0.9288 42 1 14.6771 10.4813 -0.1965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365486294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = -55.486432 kcal Electronic energy + Delta-G solvation = -27284.337929 eV Core-core repulsion = 22881.481728 eV Total energy + Delta-G solvation = -4402.856201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38962 -40.85350 -40.28408 -39.36488 -37.38928 -35.36267 -34.99168 -34.53160 -33.62246 -31.00377 -30.31519 -29.34914 -28.40401 -26.86811 -25.97363 -23.15461 -22.14977 -21.68318 -21.22607 -20.57027 -20.06145 -18.89495 -18.10917 -17.83507 -17.45963 -17.15731 -16.92555 -16.63084 -16.40686 -16.00957 -15.49135 -15.37542 -14.66830 -14.62210 -14.46588 -14.05246 -13.96340 -13.76495 -13.53298 -13.47574 -13.14271 -12.85875 -12.74365 -12.40225 -12.19690 -11.80947 -11.54281 -11.35959 -11.14206 -10.79846 -10.67233 -10.45934 -10.17512 -10.14178 -9.96037 -9.74846 -9.43230 -8.96544 -8.55896 -8.16526 -7.46258 -6.55818 -4.29751 1.36788 1.58202 1.92869 2.18974 2.58574 2.71343 3.03524 3.39631 3.41557 3.52520 3.61172 3.77703 3.86325 4.09884 4.27694 4.43504 4.45105 4.48532 4.56879 4.64113 4.88675 4.94115 4.96304 5.17930 5.43162 5.45850 5.61593 5.72748 6.01816 6.17970 6.42797 6.47983 6.64769 6.69841 6.78923 6.88822 6.96934 7.42366 7.44104 7.64793 7.86731 7.88811 8.37108 8.49607 8.58152 8.65551 9.38462 10.81710 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.001495 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.829024 B =18720.782365 C =19313.987576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.459 3.541 4 O -0.502 6.502 5 C 0.128 3.872 6 N -0.722 5.722 7 C 0.518 3.482 8 O -0.529 6.529 9 C 0.126 3.874 10 N -0.735 5.735 11 C 0.719 3.281 12 O -0.568 6.568 13 N -0.640 5.640 14 C 0.277 3.723 15 C -0.284 4.284 16 C 0.050 3.950 17 N -0.319 5.319 18 C 0.250 3.750 19 C -0.608 4.608 20 H 0.063 0.937 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.304 5.304 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.417 0.583 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.409 0.591 37 H 0.409 0.591 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.179 -19.213 -2.193 35.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.302 3.698 4 O -0.389 6.389 5 C 0.003 3.997 6 N -0.380 5.380 7 C 0.305 3.695 8 O -0.405 6.405 9 C -0.003 4.003 10 N -0.396 5.396 11 C 0.418 3.582 12 O -0.444 6.444 13 N -0.290 5.290 14 C 0.023 3.977 15 C -0.315 4.315 16 C -0.099 4.099 17 N -0.100 5.100 18 C 0.131 3.869 19 C -0.646 4.646 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.211 1.211 27 N -0.135 5.135 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.255 0.745 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.247 0.753 37 H 0.244 0.756 38 H 0.180 0.820 39 H 0.185 0.815 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.702 -18.973 -1.452 32.789 hybrid contribution -2.409 -0.242 -0.776 2.543 sum -29.112 -19.216 -2.228 34.953 Atomic orbital electron populations 1.23380 0.75148 1.04279 1.02972 1.86481 1.24268 1.32375 1.83731 1.23519 0.91841 0.81944 0.72531 1.90708 1.66802 1.36248 1.45164 1.20628 0.87070 0.85078 1.06907 1.45610 1.08120 1.07629 1.76608 1.20595 0.81782 0.91667 0.75487 1.90751 1.51116 1.49775 1.48865 1.20789 0.81594 0.92258 1.05616 1.44593 1.05905 1.07875 1.81180 1.15437 0.81200 0.83570 0.78028 1.90876 1.63947 1.33019 1.56515 1.41294 1.04638 1.06705 1.76385 1.18766 0.90838 0.85102 1.02988 1.21519 1.01070 0.89155 1.19768 1.22556 0.85398 0.99386 1.02595 1.48762 1.07028 1.01874 1.52365 1.19748 0.76098 0.91794 0.99214 1.22115 1.02013 1.28080 1.12398 0.91831 1.25915 0.95566 0.94551 1.02122 1.70851 1.39963 1.28242 1.15023 0.83420 0.75896 0.75988 0.74318 1.20546 1.21253 1.21150 1.77357 1.12413 0.95380 1.28311 0.91477 0.91492 0.87562 0.86538 0.86530 0.74519 0.87757 0.87780 0.75333 0.75565 0.81987 0.81529 0.93624 0.94799 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.10 10.56 101.05 1.07 1.17 16 2 O -0.35 -1.75 10.57 -39.25 -0.41 -2.17 16 3 C 0.46 2.53 8.03 36.00 0.29 2.82 16 4 O -0.50 -3.94 15.42 -18.75 -0.29 -4.23 16 5 C 0.13 0.56 6.27 -5.20 -0.03 0.53 16 6 N -0.72 -3.82 5.53 -61.48 -0.34 -4.15 16 7 C 0.52 3.81 7.90 -10.99 -0.09 3.73 16 8 O -0.53 -5.42 15.67 5.56 0.09 -5.33 16 9 C 0.13 0.97 6.15 -5.20 -0.03 0.94 16 10 N -0.74 -7.63 5.53 -66.41 -0.37 -8.00 16 11 C 0.72 10.43 8.53 -86.91 -0.74 9.68 16 12 O -0.57 -9.77 13.47 5.29 0.07 -9.70 16 13 N -0.64 -10.12 5.46 -15.50 -0.08 -10.20 16 14 C 0.28 5.65 8.11 -154.36 -1.25 4.40 16 15 C -0.28 -5.67 9.61 -39.84 -0.38 -6.05 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 18 C 0.25 6.37 5.57 -5.19 -0.03 6.34 16 19 C -0.61 -17.24 9.24 -34.44 -0.32 -17.56 16 20 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 21 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 22 N -0.91 -26.49 13.65 55.43 0.76 -25.74 16 23 Si 1.08 25.09 29.90 -169.99 -5.08 20.01 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 N -0.30 -7.12 12.42 31.44 0.39 -6.73 16 28 H 0.07 0.19 8.13 -51.93 -0.42 -0.23 16 29 H 0.07 0.19 8.13 -51.93 -0.42 -0.23 16 30 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.42 1.87 7.44 -40.82 -0.30 1.57 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.41 3.86 7.45 -40.82 -0.30 3.55 16 37 H 0.41 5.37 8.84 -40.82 -0.36 5.01 16 38 H 0.16 3.13 5.91 -52.48 -0.31 2.82 16 39 H 0.17 2.73 8.06 -52.48 -0.42 2.31 16 40 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 41 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 42 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -37.39 375.10 -6.65 -44.05 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.99 Total: 6.93 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.81 Total: 7.36 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.13 Total: -62.57 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.55 Total: -21.42 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.39 -6.65 -44.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365486294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.441 kcal (2) G-P(sol) polarization free energy of solvation -37.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds