Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99997 * 2 1 4 4 O 1.20831 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99841 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47118 * 180.02562 * 5 3 2 7 7 C 1.34777 * 120.00193 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99774 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00197 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47129 * 180.02562 * 9 7 6 11 11 C 1.34779 * 119.99738 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00349 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97533 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71691 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96849 * 179.97438 * 14 13 11 28 28 H 1.09005 * 109.47323 * 300.00540 * 1 2 3 29 29 H 1.09002 * 109.47061 * 59.99592 * 1 2 3 30 30 H 1.08991 * 109.47254 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47201 * 59.99792 * 5 3 2 32 32 H 1.09001 * 109.46910 * 299.99839 * 5 3 2 33 33 H 0.97007 * 120.00454 * 359.97438 * 6 5 3 34 34 H 1.08994 * 109.47542 * 59.99579 * 9 7 6 35 35 H 1.09001 * 109.47139 * 299.99913 * 9 7 6 36 36 H 0.96998 * 120.00159 * 359.97438 * 10 9 7 37 37 H 0.96998 * 119.99666 * 359.97438 * 13 11 10 38 38 H 1.08003 * 126.06887 * 0.02562 * 15 14 13 39 39 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 40 40 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 41 41 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 42 42 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 5.2921 2.9950 0.0011 8 8 6.1274 2.1156 0.0012 9 6 5.7194 4.4401 0.0011 10 7 7.1824 4.5167 0.0005 11 6 7.7943 5.7176 0.0009 12 8 7.1321 6.7374 0.0012 13 7 9.1403 5.7881 0.0009 14 6 9.7768 7.0373 0.0007 15 6 9.1388 8.2879 0.0000 16 6 10.0969 9.2424 0.0065 17 7 11.2967 8.6246 0.0015 18 6 12.6047 9.2845 0.0023 19 6 13.4197 8.7831 1.1666 20 1 13.0050 8.0462 1.8384 21 6 14.6947 9.2650 1.3740 22 7 15.2017 10.1584 0.5528 23 14 15.7052 8.6429 2.8167 24 1 17.0332 9.3075 2.8141 25 1 14.9990 8.9528 4.0858 26 1 15.8866 7.1739 2.6971 27 7 11.0728 7.2419 0.0012 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.3137 3.3831 0.0006 34 1 5.3297 4.9343 0.8909 35 1 5.3298 4.9341 -0.8890 36 1 7.7107 3.7032 0.0006 37 1 9.6685 4.9745 0.0010 38 1 8.0722 8.4576 -0.0001 39 1 9.9312 10.3097 0.0117 40 1 12.4678 10.3622 0.0921 41 1 13.1251 9.0607 -0.9288 42 1 14.6771 10.4813 -0.1965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365486294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -84.459653 kcal Electronic energy + Delta-G solvation = -27285.594303 eV Core-core repulsion = 22881.481728 eV Total energy + Delta-G solvation = -4404.112574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31074 -41.83592 -41.20503 -40.39541 -37.82468 -36.51358 -35.91072 -35.52998 -35.47952 -32.67500 -31.05325 -30.86921 -29.02471 -28.06957 -27.11467 -25.07308 -23.23436 -22.37809 -22.08255 -21.80009 -21.38824 -19.81979 -19.22633 -18.77157 -18.53744 -18.12319 -17.86949 -17.43843 -17.18399 -16.96622 -16.51931 -16.38663 -15.97259 -15.78251 -15.54321 -15.42425 -15.01278 -14.88057 -14.46372 -14.25477 -14.12353 -13.96640 -13.85674 -13.68237 -13.42737 -13.19973 -12.99813 -12.59989 -12.01255 -11.94263 -11.88994 -11.81890 -11.68592 -11.32690 -11.20490 -10.99076 -10.67843 -10.49091 -10.31073 -9.79199 -9.13764 -8.75191 -6.54037 0.89390 0.94813 1.02219 1.32759 1.34557 1.52300 1.58804 1.64388 1.80176 1.94987 2.25826 2.35090 2.50155 3.02884 3.10081 3.42468 3.63982 3.89096 4.16889 4.17400 4.26257 4.32007 4.32721 4.35406 4.36327 4.58741 4.71676 4.72744 4.79639 4.88491 4.99365 5.02941 5.23482 5.27965 5.56146 5.76056 5.85984 5.97281 6.19650 6.29716 6.44019 6.48175 6.63916 6.90262 7.06532 7.21810 7.33438 8.60187 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.001495 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.829024 B =18720.782365 C =19313.987576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.529 6.529 5 C 0.128 3.872 6 N -0.711 5.711 7 C 0.527 3.473 8 O -0.559 6.559 9 C 0.121 3.879 10 N -0.719 5.719 11 C 0.719 3.281 12 O -0.594 6.594 13 N -0.636 5.636 14 C 0.287 3.713 15 C -0.288 4.288 16 C 0.055 3.945 17 N -0.345 5.345 18 C 0.260 3.740 19 C -0.622 4.622 20 H 0.045 0.955 21 C -0.018 4.018 22 N -0.924 5.924 23 Si 1.120 2.880 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.276 1.276 27 N -0.349 5.349 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.422 0.578 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.416 0.584 37 H 0.421 0.579 38 H 0.173 0.827 39 H 0.202 0.798 40 H 0.055 0.945 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.662 -20.313 -1.603 36.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.418 6.418 5 C 0.004 3.996 6 N -0.368 5.368 7 C 0.314 3.686 8 O -0.437 6.437 9 C -0.006 4.006 10 N -0.378 5.378 11 C 0.419 3.581 12 O -0.471 6.471 13 N -0.288 5.288 14 C 0.031 3.969 15 C -0.319 4.319 16 C -0.093 4.093 17 N -0.126 5.126 18 C 0.140 3.860 19 C -0.660 4.660 20 H 0.063 0.937 21 C -0.218 4.218 22 N -0.560 5.560 23 Si 0.941 3.059 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.202 1.202 27 N -0.180 5.180 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.261 0.739 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.254 0.746 37 H 0.258 0.742 38 H 0.190 0.810 39 H 0.219 0.781 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -28.266 -20.132 -0.877 34.714 hybrid contribution -2.172 -0.003 -1.005 2.393 sum -30.438 -20.135 -1.883 36.544 Atomic orbital electron populations 1.23613 0.74018 1.05950 1.02839 1.86479 1.25435 1.31977 1.83373 1.23659 0.92115 0.81723 0.71649 1.90700 1.67449 1.37059 1.46606 1.20757 0.86408 0.84490 1.07980 1.45517 1.07518 1.08406 1.75404 1.20401 0.82049 0.91036 0.75125 1.90749 1.51956 1.50385 1.50644 1.21015 0.79777 0.92924 1.06888 1.44501 1.07134 1.06660 1.79502 1.15514 0.80528 0.84329 0.77765 1.90848 1.64257 1.34254 1.57761 1.41336 1.05330 1.05737 1.76383 1.19074 0.90208 0.86938 1.00690 1.21726 1.01421 0.89020 1.19707 1.23191 0.84134 1.01193 1.00745 1.48543 1.07080 1.02308 1.54711 1.19410 0.77024 0.92211 0.97321 1.22307 1.02821 1.27853 1.13053 0.93656 1.27255 0.96693 0.94011 1.03806 1.70946 1.40171 1.29309 1.15545 0.82880 0.74899 0.76018 0.72142 1.19986 1.19639 1.20153 1.77271 1.14197 0.95689 1.30811 0.91642 0.91632 0.85070 0.85407 0.85448 0.73898 0.86565 0.86470 0.74551 0.74208 0.80982 0.78107 0.92760 0.96620 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.56 113.37 1.20 1.33 16 2 O -0.36 -3.06 10.57 -51.40 -0.54 -3.61 16 3 C 0.46 4.54 8.03 71.24 0.57 5.11 16 4 O -0.53 -7.81 15.42 21.95 0.34 -7.47 16 5 C 0.13 0.90 6.27 85.63 0.54 1.44 16 6 N -0.71 -6.26 5.53 -466.80 -2.58 -8.84 16 7 C 0.53 6.79 7.90 87.66 0.69 7.48 16 8 O -0.56 -10.53 15.67 -3.03 -0.05 -10.58 16 9 C 0.12 1.62 6.15 85.63 0.53 2.15 16 10 N -0.72 -13.65 5.53 -482.29 -2.67 -16.32 16 11 C 0.72 19.81 8.53 179.05 1.53 21.34 16 12 O -0.59 -19.48 13.47 -4.00 -0.05 -19.54 16 13 N -0.64 -19.51 5.46 -321.22 -1.75 -21.26 16 14 C 0.29 11.54 8.11 133.31 1.08 12.62 16 15 C -0.29 -11.19 9.61 22.10 0.21 -10.98 16 16 C 0.06 2.18 11.44 83.52 0.96 3.14 16 17 N -0.34 -16.34 3.67 -351.84 -1.29 -17.63 16 18 C 0.26 13.48 5.57 85.64 0.48 13.96 16 19 C -0.62 -35.73 9.24 25.60 0.24 -35.50 16 20 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 21 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 22 N -0.92 -54.29 13.65 21.45 0.29 -54.00 16 23 Si 1.12 50.06 29.90 68.60 2.05 52.11 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 27 N -0.35 -16.49 12.42 -54.44 -0.68 -17.17 16 28 H 0.06 0.32 8.13 -2.38 -0.02 0.30 16 29 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 30 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.42 3.07 7.44 -92.70 -0.69 2.38 16 34 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.42 7.14 7.45 -92.71 -0.69 6.45 16 37 H 0.42 10.69 8.84 -92.71 -0.82 9.87 16 38 H 0.17 6.38 5.91 -2.91 -0.02 6.36 16 39 H 0.20 6.20 8.06 -2.91 -0.02 6.17 16 40 H 0.05 2.69 7.94 -2.39 -0.02 2.67 16 41 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 42 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 Total: -1.00 -80.00 375.10 0.56 -79.44 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.99 Total: 23.32 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 8.48 Total: 21.53 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -8.67 Total: -135.21 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.31 Total: -41.19 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -80.00 0.56 -79.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365486294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.018 kcal (2) G-P(sol) polarization free energy of solvation -80.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds